Query gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 171 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:44:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781205.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2yrka1 g.37.1.4 (A:8-55) Zinc 10.5 23 0.0017 14.5 -0.3 19 25-43 11-29 (48) 2 d1i5pa2 b.77.2.1 (A:264-472) d 7.3 27 0.002 14.1 -1.0 13 79-91 43-55 (209) 3 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 6.7 72 0.0052 11.7 1.3 41 119-163 43-84 (107) 4 d2pgga1 e.8.1.4 (A:31-804) Vir 5.9 37 0.0027 13.3 -0.9 55 102-157 389-443 (774) 5 d1v54j_ f.23.4.1 (J:) Mitochon 5.5 85 0.0062 11.3 0.9 18 5-22 27-44 (58) 6 d1lm4a_ d.167.1.1 (A:) Peptide 4.6 97 0.0071 11.0 0.8 17 11-27 69-85 (194) 7 d2f9yb1 c.14.1.4 (B:23-285) Ac 4.4 76 0.0055 11.6 -0.2 14 140-153 202-215 (263) 8 d1f53a_ b.11.1.4 (A:) Killer t 4.3 73 0.0053 11.7 -0.3 30 123-152 52-81 (84) 9 d1eysh2 f.23.10.1 (H:7-43) Pho 4.2 39 0.0028 13.2 -1.8 12 55-68 21-32 (37) 10 d2f6ma1 a.2.17.1 (A:322-385) V 4.1 81 0.0059 11.4 -0.3 30 43-75 9-38 (64) No 1 >d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]} Probab=10.48 E-value=23 Score=14.47 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 1346666553212467888 Q gi|254781205|r 25 ISSTLASHRSSIRDHEYRS 43 (171) Q Consensus 25 isstlashrssirdheyrs 43 (171) +-+.--|++.|+|||-+-. T Consensus 11 lC~vKYs~~~SvrdHiFsk 29 (48) T d2yrka1 11 LCGVKYSARLSIRDHIFSK 29 (48) T ss_dssp TTTCCCCSSSCHHHHHTSH T ss_pred CCCEEEEEECCHHHHHHHH T ss_conf 1153430102167665229 No 2 >d1i5pa2 b.77.2.1 (A:264-472) delta-Endotoxin (insectocide), middle domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId: 29339]} Probab=7.28 E-value=27 Score=14.08 Aligned_cols=13 Identities=46% Similarity=0.853 Sum_probs=9.0 Q ss_pred HHHHCCCCCCEEE Q ss_conf 8860466551366 Q gi|254781205|r 79 AVLSGVSGASLDL 91 (171) Q Consensus 79 avlsgvsgasldl 91 (171) -|||||||+.+.. T Consensus 43 YVLsG~SG~~~~~ 55 (209) T d1i5pa2 43 YILSGISGTRLSI 55 (209) T ss_dssp BCEEEEEEEEEEE T ss_pred EEEECCCCCEEEE T ss_conf 5886344530688 No 3 >d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Probab=6.70 E-value=72 Score=11.75 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=22.6 Q ss_pred HHHHCHHHHHHHHHHCCCCEEEHHCCCC-HHHCCHHHHHHHHHHHH Q ss_conf 8641211210666421542000010477-01100013568888762 Q gi|254781205|r 119 AKEAGWHRANKEAVKNNRWASVAAIAGP-PMVESASSAGMKMFRRY 163 (171) Q Consensus 119 akeagwhrankeavknnrwasvaaiagp-pmvesassagmkmfrry 163 (171) .+..||...+ +++.|..|+..-|- |...+++..=-..+.+| T Consensus 43 ~~~GG~~~V~----~~~~W~~ia~~lg~~~~~~~~~~~Lk~~Y~~~ 84 (107) T d1ig6a_ 43 QKLGGYETIT----ARRQWKHIYDELGGNPGSTSAATCTRRHYERL 84 (107) T ss_dssp HHTTHHHHHH----HHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHH T ss_pred HHHCCHHHCC----CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9967705336----50619999998688987787999999999999 No 4 >d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]} Probab=5.95 E-value=37 Score=13.33 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=43.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHHHH Q ss_conf 03313445678899998864121121066642154200001047701100013568 Q gi|254781205|r 102 KGINTARTAREQTVARFAKEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGM 157 (171) Q Consensus 102 kgintartareqtvarfakeagwhrankeavknnrwasvaaiagppmvesassagm 157 (171) ||--.+....-|+++-+--.-||. .+-+..-|-.||..|--..|-||-..|+-=| T Consensus 389 KGEANcTp~haqa~~yyLLTRGWs-~~G~P~fN~TWAt~am~~aP~mvVdsscllm 443 (774) T d2pgga1 389 KGEANCTRQHMQAAMYYILTRGWS-DNGDPMFNQTWATFAMNIAPALVVDSSCLIM 443 (774) T ss_dssp TGGGGCCHHHHHHHHHHHHHHHSE-ETTEECBCHHHHHHHHHTHHHHHBSCEEEEB T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHCCCCEEECHHHHHH T ss_conf 566568889999999999972677-6898563588999998318613642267652 No 5 >d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]} Probab=5.48 E-value=85 Score=11.35 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 677776554210121044 Q gi|254781205|r 5 MDDLLYGLSLASPLVGAG 22 (171) Q Consensus 5 mddllyglslasplvgag 22 (171) +|-+||.+..+--++|.+ T Consensus 27 ~D~~LYr~Tm~L~~~G~~ 44 (58) T d1v54j_ 27 TDNILYRVTMTLCLGGTL 44 (58) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 017999999999999899 No 6 >d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus [TaxId: 1280]} Probab=4.63 E-value=97 Score=11.02 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=11.5 Q ss_pred HHHHHHHHHHCCCHHHH Q ss_conf 55421012104400134 Q gi|254781205|r 11 GLSLASPLVGAGLRISS 27 (171) Q Consensus 11 glslasplvgaglriss 27 (171) |..||.|-||-.+||-- T Consensus 69 GvGLAApQIGv~~Rifv 85 (194) T d1lm4a_ 69 GVGLAAPQINISKRMIA 85 (194) T ss_dssp BSEEEGGGGTCCBSEEE T ss_pred CCEEEEEEEEHHHHHHE T ss_conf 62134212125335221 No 7 >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Probab=4.37 E-value=76 Score=11.62 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=8.8 Q ss_pred EHHCCCCHHHCCHH Q ss_conf 00104770110001 Q gi|254781205|r 140 VAAIAGPPMVESAS 153 (171) Q Consensus 140 vaaiagppmvesas 153 (171) ...++||+|||.+. T Consensus 202 ~i~~aGP~vve~~~ 215 (263) T d2f9yb1 202 LIGFAGPRVIEQTV 215 (263) T ss_dssp BEESSCHHHHHHHH T ss_pred EEECCCHHHHHHHC T ss_conf 45425987875540 No 8 >d1f53a_ b.11.1.4 (A:) Killer toxin-like protein SKLP {Streptomyces sp. [TaxId: 1931]} Probab=4.26 E-value=73 Score=11.70 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=25.0 Q ss_pred CHHHHHHHHHHCCCCEEEHHCCCCHHHCCH Q ss_conf 211210666421542000010477011000 Q gi|254781205|r 123 GWHRANKEAVKNNRWASVAAIAGPPMVESA 152 (171) Q Consensus 123 gwhrankeavknnrwasvaaiagppmvesa 152 (171) -+|.||-..|.-.||-.+.--.-||-|.+- T Consensus 52 ~Y~DANG~sV~~~~~~~Is~P~RPP~V~~I 81 (84) T d1f53a_ 52 IYYDANGDSVRVDRWHDITYPNRPPKVNSI 81 (84) T ss_dssp EEEETTTEEEECCSSCEECCSSSCCCCCBC T ss_pred EEECCCCCEEEEEEEEEEECCCCCCCCCEE T ss_conf 887079988988766575058999976757 No 9 >d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]} Probab=4.20 E-value=39 Score=13.24 Aligned_cols=12 Identities=67% Similarity=1.298 Sum_probs=7.0 Q ss_pred EEEECCCHHHHHHH Q ss_conf 23441203676640 Q gi|254781205|r 55 VLYLDREDQARREG 68 (171) Q Consensus 55 vlyldredqarreg 68 (171) +.||.||++ ||| T Consensus 21 i~YL~rE~~--REG 32 (37) T d1eysh2 21 IIYLRREDK--REG 32 (37) T ss_dssp HHHHHHHTT--SSS T ss_pred HHHHHHCCC--CCC T ss_conf 999972354--357 No 10 >d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.06 E-value=81 Score=11.45 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH Q ss_conf 887542100000234412036766401334278 Q gi|254781205|r 43 SLLAEENALRADVLYLDREDQARREGIMDTGVF 75 (171) Q Consensus 43 sllaeenalradvlyldredqarregimdtgvf 75 (171) .+.|||.|+---+.||+ ++-+.|.++...| T Consensus 9 ~l~Aed~AieDaiy~L~---~aL~~G~I~~d~y 38 (64) T d2f6ma1 9 NLVAQDYALTDTIEALS---RMLHRGTIPLDTF 38 (64) T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHTSSCHHHH T ss_pred HHHHHHHHHHHHHHHHH---HHHHCCCCCHHHH T ss_conf 99979988899999999---9998697679999 Done!