RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
           structural genomics, structural genomics consortium,
           SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
           (A:42-117)
          Length = 76

 Score = 25.2 bits (55), Expect = 5.4
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163
           +   K+ RWA VA     P  ++  S     + R 
Sbjct: 15  EAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 49


>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin
           regulator, developmental protein, dioxygenase, iron,
           metal-binding, nucleus, oxidoreductase; NMR {Homo
           sapiens} (A:38-96)
          Length = 59

 Score = 25.1 bits (55), Expect = 5.5
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163
           +   K  +W+ V +  G    +   S     + R 
Sbjct: 15  EMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 49


>1f53_A Yeast killer toxin-like protein; killer toxin-like
           protein,SKLP, crystallin family; NMR {Streptomyces SP}
           (A:)
          Length = 84

 Score = 24.9 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 124 WHRANKEAVKNNRWASVAAIAGPPMVES 151
           ++ AN ++V+ +RW  +     PP V S
Sbjct: 53  YYDANGDSVRVDRWHDITYPNRPPKVNS 80


>3icj_A Uncharacterized metal-dependent hydrolase; structural
           genomics, amidohydrolase, PSI-2, protein structure
           initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB:
           3etk_A* 3igh_X* (A:1-96,A:487-534)
          Length = 144

 Score = 24.2 bits (52), Expect = 9.6
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 19  VGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIM 70
            G               I D + + ++  E   RA+ + LDR+     +GI+
Sbjct: 68  AGDSSTALRIAELAGGEIIDLKGKFVMPAERGFRAEYIILDRDPLKEMKGII 119


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,162,609
Number of extensions: 44527
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 11
Length of query: 171
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 89
Effective length of database: 2,184,039
Effective search space: 194379471
Effective search space used: 194379471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)