RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A (A:42-117) Length = 76 Score = 25.2 bits (55), Expect = 5.4 Identities = 9/35 (25%), Positives = 14/35 (40%) Query: 129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 + K+ RWA VA P ++ S + R Sbjct: 15 EAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 49 >2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:38-96) Length = 59 Score = 25.1 bits (55), Expect = 5.5 Identities = 6/35 (17%), Positives = 12/35 (34%) Query: 129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 + K +W+ V + G + S + R Sbjct: 15 EMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 49 >1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} (A:) Length = 84 Score = 24.9 bits (54), Expect = 6.9 Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 124 WHRANKEAVKNNRWASVAAIAGPPMVES 151 ++ AN ++V+ +RW + PP V S Sbjct: 53 YYDANGDSVRVDRWHDITYPNRPPKVNS 80 >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* (A:1-96,A:487-534) Length = 144 Score = 24.2 bits (52), Expect = 9.6 Identities = 11/52 (21%), Positives = 20/52 (38%) Query: 19 VGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDREDQARREGIM 70 G I D + + ++ E RA+ + LDR+ +GI+ Sbjct: 68 AGDSSTALRIAELAGGEIIDLKGKFVMPAERGFRAEYIILDRDPLKEMKGII 119 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.129 0.357 Gapped Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,162,609 Number of extensions: 44527 Number of successful extensions: 97 Number of sequences better than 10.0: 1 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 11 Length of query: 171 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 89 Effective length of database: 2,184,039 Effective search space: 194379471 Effective search space used: 194379471 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (23.9 bits)