BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781205|ref|YP_003065618.1| hypothetical protein
CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score =  346 bits (888), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60
           MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR
Sbjct: 1   MSIGMDDLLYGLSLASPLVGAGLRISSTLASHRSSIRDHEYRSLLAEENALRADVLYLDR 60

Query: 61  EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120
           EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK
Sbjct: 61  EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAK 120

Query: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171
           EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS
Sbjct: 121 EAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRYNVKGKDAS 171


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 23.1 bits (48), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 23/121 (19%)

Query: 23   LRISSTLASHRSSIR-------DHEYRSLLAEENALRADVLYLDREDQARREGIMDTGVF 75
            LR+ S ++     +R       D   RS+  E   +  ++L  D++D+   + I+D  ++
Sbjct: 929  LRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQI--ELLARDKDDE---QVILDRNIY 983

Query: 76   RMKAVLSGVSGASLDLLVGQNTRNAYKGINTARTAREQTVARFAKEAGWHRA-NKEAVKN 134
                         +++L GQN  +  KG   +       ++ + +   W  A   E V+ 
Sbjct: 984  ----------SRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQR 1033

Query: 135  N 135
            N
Sbjct: 1034 N 1034


>gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 206

 Score = 21.9 bits (45), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 20  GAGLRISSTLASHRSSIRDHEYRSLLAEENALRAD-----VLYLDREDQARREGIMDTGV 74
           G  LR    +  +   I + ++RS+  E +  R D     + +L        E  +DT V
Sbjct: 49  GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL--------ESRLDTIV 100

Query: 75  FRMKAV 80
           +R K V
Sbjct: 101 YRAKFV 106


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,339
Number of Sequences: 1233
Number of extensions: 3131
Number of successful extensions: 10
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 328,796
effective HSP length: 68
effective length of query: 103
effective length of database: 244,952
effective search space: 25230056
effective search space used: 25230056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)