Query gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 1246 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 12:10:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781206.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zs3a1 a.25.1.1 (A:3-173) Dod 29.8 10 0.00074 13.0 5.7 96 872-967 70-166 (171) 2 d1vk3a3 d.139.1.1 (A:167-345) 21.8 5.4 0.00039 15.0 -1.1 63 1136-1198 113-177 (179) 3 d1epua_ e.25.1.1 (A:) Neuronal 17.3 17 0.0013 11.3 2.1 20 1200-1219 564-583 (590) 4 d1mqsa_ e.25.1.1 (A:) Sly1P pr 16.8 18 0.0013 11.2 2.0 29 1191-1219 615-643 (653) 5 d1k28a1 b.40.8.1 (A:6-129) Tai 15.6 19 0.0014 11.0 2.4 26 783-808 21-55 (124) 6 d1ofcx1 a.4.1.3 (X:799-850) SA 15.3 19 0.0014 11.0 2.1 23 604-630 29-51 (52) 7 d1x4ta1 a.2.15.1 (A:7-86) Pre- 15.2 20 0.0014 11.0 3.4 39 225-270 26-64 (80) 8 d2a6sa1 d.298.1.1 (A:1-83) Tox 13.4 22 0.0016 10.6 4.5 41 593-636 5-45 (83) 9 d2iu5a2 a.121.1.1 (A:72-180) T 13.3 18 0.0013 11.3 -0.2 16 714-729 80-95 (109) 10 d1dn1a_ e.25.1.1 (A:) Neuronal 13.1 22 0.0016 10.6 2.1 18 334-351 539-556 (589) No 1 >d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]} Probab=29.83 E-value=10 Score=13.00 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHH Q ss_conf 235688752033087743011899999887666332113889999999988999999999862000138788-7017899 Q gi|254781206|r 872 LNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNP-NKNQKKL 950 (1246) Q Consensus 872 lnaeverlsglaqqpsdstadlkelqtqlsrakkykesnderivsfirsefereikelksvieadakenpnp-nknqkkl 950 (1246) +..-.||+..|...|..+.+.+-++.+-..-.-.-+..+.+-.|.-+-..|+.-+..++..|+.-.++|-.+ .---..+ T Consensus 70 ~D~iAEri~~lG~~p~~t~~e~~e~s~i~e~~~~~~~~s~~eml~~Lv~d~~~~~~~~~~~i~~A~~e~D~~tadll~d~ 149 (171) T d1zs3a1 70 FFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVEL 149 (171) T ss_dssp HHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999987999996699999774676677878899999999999999999999999999999887888899999999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999976664 Q gi|254781206|r 951 QKTREKLVAQLSSRLKE 967 (1246) Q Consensus 951 qktreklvaqlssrlke 967 (1246) ...-+|-+-.|.|.|.. T Consensus 150 ~~~~eK~iWmL~a~Lgk 166 (171) T d1zs3a1 150 YGYNLQVIRNLAGDLGK 166 (171) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHCC T ss_conf 99999999999998782 No 2 >d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]} Probab=21.83 E-value=5.4 Score=15.02 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=41.3 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCHHHHCCCCCC Q ss_conf 777740586034653012344321135799888787400001021103443--208885599866 Q gi|254781206|r 1136 GGANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPI--VPVEELRGKPKT 1198 (1246) Q Consensus 1136 gganeryvcipsmdtsesfnstmgkkrrifkvvvrvintadlevgilgfpi--vpveelrgkpkt 1198 (1246) +-..+|||..-+.+..+.|...|.+..--+.++-+|.+...+.+-.-|-.| +|++.|+..|+. T Consensus 113 sEsq~R~vv~v~~~~~~~~~~~~~~~~~~~~~IG~vt~~~~l~i~~~~~~ivdlpv~~L~~aP~~ 177 (179) T d1vk3a3 113 SESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAPEE 177 (179) T ss_dssp CCCSSEEEEEECGGGHHHHHHHHHHTTCEEEEEEEEESSCEEEEEETTEEEEEEEHHHHHSCCCC T ss_pred ECCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCEEEEEEHHHHCCCCCC T ss_conf 15767279984426899999999983999337899954985999989938998389997289967 No 3 >d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Probab=17.27 E-value=17 Score=11.30 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=12.9 Q ss_pred CEEEEECCCCCCCHHEEEEE Q ss_conf 15888217787772018886 Q gi|254781206|r 1200 EFEVLVPSDASLNPEIIIRQ 1219 (1246) Q Consensus 1200 efevlvpsdaslnpeiiirq 1219 (1246) .++|++-+..-+||.-.+.+ T Consensus 564 ~~~iiiGsT~i~n~~~fl~~ 583 (590) T d1epua_ 564 NWEVILGSTHILTPEGLLRD 583 (590) T ss_dssp SCEEEEEESSBCCHHHHHHH T ss_pred CCEEEEEECCEECHHHHHHH T ss_conf 96799982875259999999 No 4 >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=16.82 E-value=18 Score=11.23 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=17.3 Q ss_pred HHCCCCCCCCEEEEECCCCCCCHHEEEEE Q ss_conf 85599866715888217787772018886 Q gi|254781206|r 1191 ELRGKPKTGEFEVLVPSDASLNPEIIIRQ 1219 (1246) Q Consensus 1191 elrgkpktgefevlvpsdaslnpeiiirq 1219 (1246) +|-.+...+..+|++-++.-+||.-.+.| T Consensus 615 ~l~~~~~~~~~~iiiGsT~iin~~~fl~~ 643 (653) T d1mqsa_ 615 EWAHSQLHNPKKVMYGSTAITTPAEFLNE 643 (653) T ss_dssp HHHTTCCSSCCEEEEEESSBCCHHHHHHH T ss_pred HHHHHCCCCCCEEEEEECCEECHHHHHHH T ss_conf 99985268996799932874049999999 No 5 >d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Probab=15.63 E-value=19 Score=11.03 Aligned_cols=26 Identities=31% Similarity=0.697 Sum_probs=20.8 Q ss_pred EEEEEEEEHH---------HHCCCCCCCEEEEECC Q ss_conf 6655522013---------3175327982688318 Q gi|254781206|r 783 RIKLRLYGIF---------QDIPQEQPPLYTIISG 808 (1246) Q Consensus 783 riklrlygif---------qdipqeqpplytiisg 808 (1246) |+|.|.+|+. .+||.++-|--+++.. T Consensus 21 RvKVRI~G~H~~~~~~~~~~~lp~~dLPWA~v~~p 55 (124) T d1k28a1 21 RVRVRVVGLHPPQRAQGDVMGIPTEKLPWMSVIQP 55 (124) T ss_dssp CEEEEEBTTBCSCCSCCSSBCCCGGGSCEEEECCC T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECC T ss_conf 27998963628976666445587100753257413 No 6 >d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=15.28 E-value=19 Score=10.97 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=15.7 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 405897899999999998875135767 Q gi|254781206|r 604 WKSLSPDEIKQRFQKYAKVFYRSYSPV 630 (1246) Q Consensus 604 wkslspdeikqrfqkyakvfyrsyspv 630 (1246) -.+-+|+|+ +.|++||...|.-+ T Consensus 29 ~~~Kt~eEV----~~Y~~vFw~ry~ei 51 (52) T d1ofcx1 29 VEGKTPEEV----IEYNAVFWERCTEL 51 (52) T ss_dssp STTCCHHHH----HHHHHHHHHHGGGC T ss_pred HCCCCHHHH----HHHHHHHHHHHHHH T ss_conf 669999999----99999999987750 No 7 >d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]} Probab=15.21 E-value=20 Score=10.95 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 7999999999974102532444310000003454679999999875 Q gi|254781206|r 225 VVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKN 270 (1246) Q Consensus 225 vvftkikevvkkhvnaelghrklrglafdhtyfndklnqflkeikn 270 (1246) .|.-.|..-|..--|+.||.-.+|- .||.+|+.++|-.. T Consensus 26 ~iikEI~~kvs~Iqn~~L~e~~IRd-------LNDeINkL~reK~~ 64 (80) T d1x4ta1 26 QIIGEISKKVAQIQNAGLGEFRIRD-------LNDEINKLLREKGH 64 (80) T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHH-------HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHHHHHHHH T ss_conf 9999999999985089987799999-------89999999999999 No 8 >d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]} Probab=13.37 E-value=22 Score=10.61 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 66753221564405897899999999998875135767765445 Q gi|254781206|r 593 LQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKG 636 (1246) Q Consensus 593 lqekawdsykewkslspdeikqrfqkyakvfyrsyspvdgsykg 636 (1246) ....||..|+.|++-.| .+.+|.-++-...-+ .|.+|.-|+ T Consensus 5 ft~~A~~d~~~~~~~d~-k~~kkI~~ll~~i~~--~p~~g~gkp 45 (83) T d2a6sa1 5 WSEESWDDYLYWQETDK-RIVKKINELIKDTRR--TPFEGKGKP 45 (83) T ss_dssp ECHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH--STTSSTTCC T ss_pred ECHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH--CCCCCCCCC T ss_conf 88899999999998299-999999999999984--767799987 No 9 >d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=13.26 E-value=18 Score=11.29 Aligned_cols=16 Identities=44% Similarity=0.476 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 1665666558876420 Q gi|254781206|r 714 GESSVRKHSFEVLSSK 729 (1246) Q Consensus 714 gessvrkhsfevlssk 729 (1246) .||-+|..|.|-|-|. T Consensus 80 resiirgnsleklysq 95 (109) T d2iu5a2 80 RESIIRGNSLEKLYSQ 95 (109) T ss_dssp HHHHHHTCCSGGGHHH T ss_pred HHHHHCCCCHHHHHHH T ss_conf 8776637629999999 No 10 >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=13.12 E-value=22 Score=10.56 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=0.0 Q ss_pred CCCCCHHHHHHHHHHHHH Q ss_conf 564339999999988874 Q gi|254781206|r 334 LGGVTYDQIKQLRDLASK 351 (1246) Q Consensus 334 lggvtydqikqlrdlask 351 (1246) +||+||..+.-+|.++.+ T Consensus 539 vGGvTy~E~~~l~~l~~~ 556 (589) T d1dn1a_ 539 LGGVSLNEMRCAYEVTQA 556 (589) T ss_dssp ETCEEHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHHHHH T ss_conf 899489999999999987 Done!