Query         gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1246
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 12:10:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781206.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1zs3a1 a.25.1.1 (A:3-173) Dod  29.8      10 0.00074   13.0   5.7   96  872-967    70-166 (171)
  2 d1vk3a3 d.139.1.1 (A:167-345)   21.8     5.4 0.00039   15.0  -1.1   63 1136-1198  113-177 (179)
  3 d1epua_ e.25.1.1 (A:) Neuronal  17.3      17  0.0013   11.3   2.1   20 1200-1219  564-583 (590)
  4 d1mqsa_ e.25.1.1 (A:) Sly1P pr  16.8      18  0.0013   11.2   2.0   29 1191-1219  615-643 (653)
  5 d1k28a1 b.40.8.1 (A:6-129) Tai  15.6      19  0.0014   11.0   2.4   26  783-808    21-55  (124)
  6 d1ofcx1 a.4.1.3 (X:799-850) SA  15.3      19  0.0014   11.0   2.1   23  604-630    29-51  (52)
  7 d1x4ta1 a.2.15.1 (A:7-86) Pre-  15.2      20  0.0014   11.0   3.4   39  225-270    26-64  (80)
  8 d2a6sa1 d.298.1.1 (A:1-83) Tox  13.4      22  0.0016   10.6   4.5   41  593-636     5-45  (83)
  9 d2iu5a2 a.121.1.1 (A:72-180) T  13.3      18  0.0013   11.3  -0.2   16  714-729    80-95  (109)
 10 d1dn1a_ e.25.1.1 (A:) Neuronal  13.1      22  0.0016   10.6   2.1   18  334-351   539-556 (589)

No 1  
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]}
Probab=29.83  E-value=10  Score=13.00  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHH
Q ss_conf             235688752033087743011899999887666332113889999999988999999999862000138788-7017899
Q gi|254781206|r  872 LNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNP-NKNQKKL  950 (1246)
Q Consensus       872 lnaeverlsglaqqpsdstadlkelqtqlsrakkykesnderivsfirsefereikelksvieadakenpnp-nknqkkl  950 (1246)
                      +..-.||+..|...|..+.+.+-++.+-..-.-.-+..+.+-.|.-+-..|+.-+..++..|+.-.++|-.+ .---..+
T Consensus        70 ~D~iAEri~~lG~~p~~t~~e~~e~s~i~e~~~~~~~~s~~eml~~Lv~d~~~~~~~~~~~i~~A~~e~D~~tadll~d~  149 (171)
T d1zs3a1          70 FFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVEL  149 (171)
T ss_dssp             HHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999987999996699999774676677878899999999999999999999999999999887888899999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999976664
Q gi|254781206|r  951 QKTREKLVAQLSSRLKE  967 (1246)
Q Consensus       951 qktreklvaqlssrlke  967 (1246)
                      ...-+|-+-.|.|.|..
T Consensus       150 ~~~~eK~iWmL~a~Lgk  166 (171)
T d1zs3a1         150 YGYNLQVIRNLAGDLGK  166 (171)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999998782


No 2  
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]}
Probab=21.83  E-value=5.4  Score=15.02  Aligned_cols=63  Identities=22%  Similarity=0.207  Sum_probs=41.3

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCHHHHCCCCCC
Q ss_conf             777740586034653012344321135799888787400001021103443--208885599866
Q gi|254781206|r 1136 GGANERYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPI--VPVEELRGKPKT 1198 (1246)
Q Consensus      1136 gganeryvcipsmdtsesfnstmgkkrrifkvvvrvintadlevgilgfpi--vpveelrgkpkt 1198 (1246)
                      +-..+|||..-+.+..+.|...|.+..--+.++-+|.+...+.+-.-|-.|  +|++.|+..|+.
T Consensus       113 sEsq~R~vv~v~~~~~~~~~~~~~~~~~~~~~IG~vt~~~~l~i~~~~~~ivdlpv~~L~~aP~~  177 (179)
T d1vk3a3         113 SESQERMAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLLANAPEE  177 (179)
T ss_dssp             CCCSSEEEEEECGGGHHHHHHHHHHTTCEEEEEEEEESSCEEEEEETTEEEEEEEHHHHHSCCCC
T ss_pred             ECCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCEEEEEEHHHHCCCCCC
T ss_conf             15767279984426899999999983999337899954985999989938998389997289967


No 3  
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]}
Probab=17.27  E-value=17  Score=11.30  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=12.9

Q ss_pred             CEEEEECCCCCCCHHEEEEE
Q ss_conf             15888217787772018886
Q gi|254781206|r 1200 EFEVLVPSDASLNPEIIIRQ 1219 (1246)
Q Consensus      1200 efevlvpsdaslnpeiiirq 1219 (1246)
                      .++|++-+..-+||.-.+.+
T Consensus       564 ~~~iiiGsT~i~n~~~fl~~  583 (590)
T d1epua_         564 NWEVILGSTHILTPEGLLRD  583 (590)
T ss_dssp             SCEEEEEESSBCCHHHHHHH
T ss_pred             CCEEEEEECCEECHHHHHHH
T ss_conf             96799982875259999999


No 4  
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.82  E-value=18  Score=11.23  Aligned_cols=29  Identities=17%  Similarity=0.145  Sum_probs=17.3

Q ss_pred             HHCCCCCCCCEEEEECCCCCCCHHEEEEE
Q ss_conf             85599866715888217787772018886
Q gi|254781206|r 1191 ELRGKPKTGEFEVLVPSDASLNPEIIIRQ 1219 (1246)
Q Consensus      1191 elrgkpktgefevlvpsdaslnpeiiirq 1219 (1246)
                      +|-.+...+..+|++-++.-+||.-.+.|
T Consensus       615 ~l~~~~~~~~~~iiiGsT~iin~~~fl~~  643 (653)
T d1mqsa_         615 EWAHSQLHNPKKVMYGSTAITTPAEFLNE  643 (653)
T ss_dssp             HHHTTCCSSCCEEEEEESSBCCHHHHHHH
T ss_pred             HHHHHCCCCCCEEEEEECCEECHHHHHHH
T ss_conf             99985268996799932874049999999


No 5  
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=15.63  E-value=19  Score=11.03  Aligned_cols=26  Identities=31%  Similarity=0.697  Sum_probs=20.8

Q ss_pred             EEEEEEEEHH---------HHCCCCCCCEEEEECC
Q ss_conf             6655522013---------3175327982688318
Q gi|254781206|r  783 RIKLRLYGIF---------QDIPQEQPPLYTIISG  808 (1246)
Q Consensus       783 riklrlygif---------qdipqeqpplytiisg  808 (1246)
                      |+|.|.+|+.         .+||.++-|--+++..
T Consensus        21 RvKVRI~G~H~~~~~~~~~~~lp~~dLPWA~v~~p   55 (124)
T d1k28a1          21 RVRVRVVGLHPPQRAQGDVMGIPTEKLPWMSVIQP   55 (124)
T ss_dssp             CEEEEEBTTBCSCCSCCSSBCCCGGGSCEEEECCC
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             27998963628976666445587100753257413


No 6  
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.28  E-value=19  Score=10.97  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=15.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             405897899999999998875135767
Q gi|254781206|r  604 WKSLSPDEIKQRFQKYAKVFYRSYSPV  630 (1246)
Q Consensus       604 wkslspdeikqrfqkyakvfyrsyspv  630 (1246)
                      -.+-+|+|+    +.|++||...|.-+
T Consensus        29 ~~~Kt~eEV----~~Y~~vFw~ry~ei   51 (52)
T d1ofcx1          29 VEGKTPEEV----IEYNAVFWERCTEL   51 (52)
T ss_dssp             STTCCHHHH----HHHHHHHHHHGGGC
T ss_pred             HCCCCHHHH----HHHHHHHHHHHHHH
T ss_conf             669999999----99999999987750


No 7  
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.21  E-value=20  Score=10.95  Aligned_cols=39  Identities=31%  Similarity=0.520  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             7999999999974102532444310000003454679999999875
Q gi|254781206|r  225 VVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKLNQFLKEIKN  270 (1246)
Q Consensus       225 vvftkikevvkkhvnaelghrklrglafdhtyfndklnqflkeikn  270 (1246)
                      .|.-.|..-|..--|+.||.-.+|-       .||.+|+.++|-..
T Consensus        26 ~iikEI~~kvs~Iqn~~L~e~~IRd-------LNDeINkL~reK~~   64 (80)
T d1x4ta1          26 QIIGEISKKVAQIQNAGLGEFRIRD-------LNDEINKLLREKGH   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHCCSCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHHHHHHHH
T ss_conf             9999999999985089987799999-------89999999999999


No 8  
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=13.37  E-value=22  Score=10.61  Aligned_cols=41  Identities=27%  Similarity=0.558  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             66753221564405897899999999998875135767765445
Q gi|254781206|r  593 LQEKAWDSYKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKG  636 (1246)
Q Consensus       593 lqekawdsykewkslspdeikqrfqkyakvfyrsyspvdgsykg  636 (1246)
                      ....||..|+.|++-.| .+.+|.-++-...-+  .|.+|.-|+
T Consensus         5 ft~~A~~d~~~~~~~d~-k~~kkI~~ll~~i~~--~p~~g~gkp   45 (83)
T d2a6sa1           5 WSEESWDDYLYWQETDK-RIVKKINELIKDTRR--TPFEGKGKP   45 (83)
T ss_dssp             ECHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH--STTSSTTCC
T ss_pred             ECHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH--CCCCCCCCC
T ss_conf             88899999999998299-999999999999984--767799987


No 9  
>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=13.26  E-value=18  Score=11.29  Aligned_cols=16  Identities=44%  Similarity=0.476  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             1665666558876420
Q gi|254781206|r  714 GESSVRKHSFEVLSSK  729 (1246)
Q Consensus       714 gessvrkhsfevlssk  729 (1246)
                      .||-+|..|.|-|-|.
T Consensus        80 resiirgnsleklysq   95 (109)
T d2iu5a2          80 RESIIRGNSLEKLYSQ   95 (109)
T ss_dssp             HHHHHHTCCSGGGHHH
T ss_pred             HHHHHCCCCHHHHHHH
T ss_conf             8776637629999999


No 10 
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.12  E-value=22  Score=10.56  Aligned_cols=18  Identities=22%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             564339999999988874
Q gi|254781206|r  334 LGGVTYDQIKQLRDLASK  351 (1246)
Q Consensus       334 lggvtydqikqlrdlask  351 (1246)
                      +||+||..+.-+|.++.+
T Consensus       539 vGGvTy~E~~~l~~l~~~  556 (589)
T d1dn1a_         539 LGGVSLNEMRCAYEVTQA  556 (589)
T ss_dssp             ETCEEHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHH
T ss_conf             899489999999999987


Done!