RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781206|ref|YP_003065619.1| hypothetical protein
CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62]
(1246 letters)
>gnl|CDD|36247 KOG1029, KOG1029, KOG1029, Endocytic adaptor protein intersectin
[Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 1118
Score = 40.1 bits (93), Expect = 0.004
Identities = 61/348 (17%), Positives = 137/348 (39%), Gaps = 48/348 (13%)
Query: 385 TSELKQATVLARANAQEEKQRR---EQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441
T E K+ + A+ E++R+ EQ+ +E+ + E+ ++E +EK +RE+ +++ + +
Sbjct: 313 TFEDKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372
Query: 442 IKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDI 501
++ + + ++ E+E ++E +K KE E REE E++ Q
Sbjct: 373 LEKQLE------------------RQREIERQREEERK-KEIERREA-AREELEKQRQLE 412
Query: 502 LDNS----LLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ-DQREKPLASDIGVGES 556
+ + +L K + + K Q + + K Q + + + DI ++
Sbjct: 413 WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472
Query: 557 DYAGIK-------LTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSP 609
+ + + + + +E ++ ++ + + + L++K + + S
Sbjct: 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS- 531
Query: 610 DEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGL 669
E++ +K + +D K T+ I+ F + N
Sbjct: 532 -ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN--------SQ 582
Query: 670 MYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESS 717
K+EL+ E KL +E L K A A + A +AG +
Sbjct: 583 QLAKEELYKNE--RDKLKEAETKALE-LIGEKEAESAPASAADAGAPA 627
>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
that regulates K(+) uptake [Inorganic ion transport and
metabolism].
Length = 1018
Score = 38.4 bits (89), Expect = 0.013
Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 40/209 (19%)
Query: 388 LKQATV-LARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446
LKQA +A+A ++E++RR ++ KE+ + KE +E +E+ +K +EK + E
Sbjct: 819 LKQALEHVAQAQEEDEEERRAKQEKEEEALIE--KELEEARRKEEEEKARREKLEKQRE- 875
Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
+ + +L E+++E KK G DD + + +
Sbjct: 876 ------------EYRERTKEILKLPEIEEEKKKSGGGGRKRGDDSDSDGERKK------- 916
Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
GK K++ K P + K +K + R KP + I +++
Sbjct: 917 -GGKRKKKDKKK----RKRKPKKDSK---EKLSESDRRKPKSKAF---------ISTSER 959
Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQE 595
+ ++ + Q SR SE+
Sbjct: 960 SDDDVVKKAESDSDDDSQDSREASEESDR 988
>gnl|CDD|32878 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 38.2 bits (88), Expect = 0.013
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 341 QIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQ 400
+ KQ + A K A+ + AE + A E +A A+A A+
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA-AEAKKKAEEAAKAAEEAKAKAE 188
Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
+++ EA+ KA EKA EA+ KA EK + E+
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227
Score = 35.1 bits (80), Expect = 0.13
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGD 447
++A A A A+ EK + E A+EKA EK AK KAD+ A E+ A D
Sbjct: 204 AEKAKAEAEAKAKAEK-KAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALD 262
Query: 448 DFGLGLPS 455
D GL S
Sbjct: 263 DIFGGLSS 270
Score = 33.2 bits (75), Expect = 0.46
Identities = 31/142 (21%), Positives = 49/142 (34%)
Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
KQA + E+KQ+ EQ K A+++K + AK KA E A + KAE
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177
Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508
+ K E + E K + + + + E + + + A
Sbjct: 178 KAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAA 237
Query: 509 GKTHTKNETPAIPTAKAPPAQA 530
K A A+ A A
Sbjct: 238 AKAKADKAAAAAKAAERKAAAA 259
>gnl|CDD|38298 KOG3088, KOG3088, KOG3088, Secretory carrier membrane protein
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 313
Score = 37.6 bits (87), Expect = 0.022
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 546 PLASDIGVGESDYAGIKLTKKEKELQEQEENL--RVAEIIQQSR-MQSEDL--QEKAWDS 600
DI + L KK+ EL +++E L + E+ ++ R + + +E W
Sbjct: 45 GPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPP 104
Query: 601 YKEWKSLSP-------DEIKQRFQKYAKVFYRSY 627
+ + P +EI FQK K Y +
Sbjct: 105 LPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLW 138
>gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin
structure and dynamics].
Length = 700
Score = 36.1 bits (83), Expect = 0.065
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
+ EEK + + K++ ++KA KEAK+K D++K + Q P+ + D FG L
Sbjct: 582 MSDEEK---KIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDEDPFGEKLLKTE 638
Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKN 498
P EE + + + KGKE G T E RK
Sbjct: 639 D------PLEEARKFLPNLQHKGKEKGETYILSFELYYRKG 673
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 35.1 bits (80), Expect = 0.12
Identities = 47/217 (21%), Positives = 85/217 (39%), Gaps = 20/217 (9%)
Query: 399 AQEEKQRREQEAKEK-ADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
+E+ EQ++ E+ A ++D +KE ++ DKD QEK + DD G+
Sbjct: 3912 NEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGI------ 3965
Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAG---KTHTK 514
++ P +E + E + P + D++E K+ D+ D + A K
Sbjct: 3966 DDEIQ-PDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEAD 4024
Query: 515 NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574
E P P + + + + QD LA D D E+ +QE E
Sbjct: 4025 AEKDE-PMQDEDPLEENNTLDEDIQQDD-FSDLAEDDEKMNED-------GFEENVQENE 4075
Query: 575 ENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDE 611
E+ + Q E +++A D++ + + S
Sbjct: 4076 ESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFA 4112
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 35.0 bits (80), Expect = 0.13
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
+ T L +QE+ +R +Q +E ++ +A++KAD + + D Q + + +
Sbjct: 198 RDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEA 257
Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
L P+ + PKE+ ++V + K+ E E +E K +D
Sbjct: 258 KNLPKPADTSS-----PKED--KQVAENQKREIEKAQIEIKKNDEEALKAKD 302
Score = 30.7 bits (69), Expect = 2.7
Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 23/146 (15%)
Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADK----EAKEKADREKADKDLQEKTPIKA 444
K A +KQR E K++ + KE + K EK I+
Sbjct: 231 KAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEI 290
Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDN 504
+ +D L K+ + ++K E K ++ D E ++K + + ++
Sbjct: 291 KKNDEEA-----------LKAKDHKAFDLKQESKASEK---EAEDKELEAQKKREPVAED 336
Query: 505 SLLAGKTHTKNETPAIPTAKAPPAQA 530
TK + A PT+ A
Sbjct: 337 L-----QKTKPQVEAQPTSLNEDAID 357
>gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B
(eIF-5B) [Translation, ribosomal structure and
biogenesis].
Length = 1064
Score = 35.0 bits (80), Expect = 0.15
Identities = 37/216 (17%), Positives = 84/216 (38%), Gaps = 15/216 (6%)
Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAK-EKADREKADKDLQEKT 440
A + ++A + +E+++++E A A++ KE K EK+ E A+ + +E
Sbjct: 145 AGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAAEKSVEAKEEKKEKSVTEPAEPEKKEAK 204
Query: 441 PIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
KAE P + + +E ++ K+ +E ++ EE R+ ++
Sbjct: 205 GKKAEK--------KKPKGVRAMQEALAKRQEEEERQKREEEE-RLRREEEEERRREEEE 255
Query: 501 ILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAG 560
+ K + E A+ A + + + ++ LAS G+ +D G
Sbjct: 256 AQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDG 315
Query: 561 IK-----LTKKEKELQEQEENLRVAEIIQQSRMQSE 591
K+K+ +++ + E + + +
Sbjct: 316 DSKKRPIYANKKKKARQKGNDRTSVEKLGEVEAKEN 351
Score = 34.2 bits (78), Expect = 0.24
Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 24/217 (11%)
Query: 394 LARANAQEEKQRREQEAKEKADREKADKE-----AKEKADREKADKDLQEKTPIKAEGDD 448
LA+ +EE+Q+RE+E + + + E+ + +E+A +K +K+ ++K KAEG
Sbjct: 223 LAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEG-- 280
Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGK--EPGTTETDDREETERKNQDILDNSL 506
KL +++ E E + G ++ + K + I N
Sbjct: 281 -------------KLLTAKQKEEAALAEAFLKQLLASGGGLPVADKDGDSKKRPIYANKK 327
Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
+ + T + + H G D D E L D E + + ++
Sbjct: 328 KKARQKGNDRTSVEKLGEVEAKENHAG--DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQE 385
Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKE 603
E E ++ + I E+LQE+ KE
Sbjct: 386 EGEEEDDWDAKVDLAIDGDDDDDEEELQEEVDKELKE 422
Score = 31.5 bits (71), Expect = 1.3
Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 23/210 (10%)
Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
E E D E+ D++AK+ + + ++K +K P
Sbjct: 18 SEALLAELLVATDKDDEEEDEDAKKASTLAFSGAKKKKKKGLKLSSPGDDSEELEEPEGK 77
Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520
K K E +E K + KK K+ + E+ K LLA
Sbjct: 78 TKKTAKVEVVETGKSKKKKKKKKKKKGKAEEEDDLDK--------LLASLGEK------- 122
Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVA 580
+ K ++ +P++ A + E A K KKEKE ++++ A
Sbjct: 123 -----DEPASEKEKKEAQPENVAPVEAAGEKEKKEKAAAKKKKEKKEKEKKKEDSAAAAA 177
Query: 581 EIIQQSRMQSEDLQEKAWDSYKEWKSLSPD 610
E ++ E+ +EK+ E +
Sbjct: 178 EKSVEA---KEEKKEKSVTEPAEPEKKEAK 204
Score = 31.5 bits (71), Expect = 1.5
Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 6/203 (2%)
Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454
R +EE++R E+EA+E+ +EK ++ KEK +R+KA+ L T + E
Sbjct: 241 LRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLL--TAKQKEEAALAEAFL 298
Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK 514
S P ++ + K + + R++ + + A + H
Sbjct: 299 KQLLASGGGLPVADKDGDSKKRPIYANK----KKKARQKGNDRTSVEKLGEVEAKENHAG 354
Query: 515 NETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQE 574
+ ++ ++ P+D ++ + I + E + QE
Sbjct: 355 DVGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEGEEEDDWDAKVDLAIDGDDDDDEEELQE 414
Query: 575 ENLRVAEIIQQSRMQSEDLQEKA 597
E + + ++ SE E A
Sbjct: 415 EVDKELKEAEEEEEDSEKPTEDA 437
>gnl|CDD|145291 pfam02029, Caldesmon, Caldesmon.
Length = 807
Score = 34.5 bits (78), Expect = 0.20
Identities = 72/397 (18%), Positives = 151/397 (38%), Gaps = 19/397 (4%)
Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446
ELK + A EE E+ E + E A E KE+A+ E+A + +EK IKAE
Sbjct: 228 ELKNGAINAEEPKDEEA--MEEGEDEISHHEDAADEDKEEAEAERAKLEAEEKERIKAEE 285
Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
D + K +E E + ++E + +E + ++ ++ + +
Sbjct: 286 DKKAADEKAKAEAEEKAAAEERERAKAEEEKRAAEERERAKAEEEKKAAEERERAKAEE- 344
Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566
K + A KA +A ++KK ++R++ A + +++ ++
Sbjct: 345 -EKKAAEERAKIAEEEKKAAEERAKIAEEEKKAAEERQRAKAEEEEKAKAEEQERAKAEE 403
Query: 567 EKELQEQEENLRVAEI--------IQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQK 618
EK+ E+E + ++ +++ + Q + Q +E K + K++ +
Sbjct: 404 EKKAAEEEAKIEAEKLEEKIEGKKMEEKKAQEDKAQAALLKKQEEDKEAKVEAKKEKLPE 463
Query: 619 YAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLMYEKDELHG 678
K ++ D + + + F+D G+ +Q M K L
Sbjct: 464 DLKPTFKKDEIKDEKIDKDKAPKEEMKSFMDRKKGFPEQK---AQNGEREFMTHK--LKH 518
Query: 679 VEAVYQKLDVLFRHCIENLRANKNA-VDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAV 737
E + + + NA + + FE L K Q++ + +
Sbjct: 519 TENAFGRPGGRASVDTKEAEGAANAEAGKRLEELRRRRGETESEEFEKLKEKQQEAALEL 578
Query: 738 NNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQK 774
+ +K+ R++++E+ ++ K E IR E +K
Sbjct: 579 DE-LKKKREERRKILEEEEQKKKQEEADRKIREEEEK 614
>gnl|CDD|37135 KOG1924, KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous
[Signal transduction mechanisms, Cytoskeleton].
Length = 1102
Score = 34.2 bits (78), Expect = 0.23
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 379 ANVANFTSELKQATVLA-RANAQEEKQRREQEAKEKADREKADKEAKEKA 427
A++ F + +A + +EEK+RR + AKE++++E+ +++ ++KA
Sbjct: 980 ADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQERLERQQRKKA 1029
>gnl|CDD|38799 KOG3592, KOG3592, KOG3592, Microtubule-associated proteins
[Cytoskeleton].
Length = 934
Score = 34.0 bits (77), Expect = 0.26
Identities = 39/200 (19%), Positives = 62/200 (31%), Gaps = 22/200 (11%)
Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQ--EKTPIKA 444
LK+ + + E + ++ +K D + E K +A L TP +A
Sbjct: 367 ALKKGAPAKPEDKKAEAIKPKKAVGKKQDGAPSKPEVKVINKGARAPPSLSSGPATPPEA 426
Query: 445 E----------GDDFGLGL-------PSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTE 487
E D L S P V +PP E + KE G
Sbjct: 427 ERRKPESVAVVLPDLELKPFPEDFNKGSAPLAIVVIPPTPEVPRLEESHKTHPKESGVPA 486
Query: 488 TDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPL 547
D + E K+ + + T TP PT + A + + + P
Sbjct: 487 EDGKAPLEVKDVRNAEA--VPDAIPTPVTTPKKPTPRPEAAVGGGSEETEIDESLDASPE 544
Query: 548 ASDIGVGESDYAGIKLTKKE 567
D V +D A +K +
Sbjct: 545 PLD-PVELTDEAELKPPTPD 563
>gnl|CDD|36151 KOG0933, KOG0933, KOG0933, Structural maintenance of chromosome
protein 2 (chromosome condensation complex Condensin,
subunit E) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1174
Score = 33.8 bits (77), Expect = 0.33
Identities = 22/102 (21%), Positives = 40/102 (39%)
Query: 867 KNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREI 926
K L E++ L +Q+ D L+ +L+ +K E N+ + E E+
Sbjct: 691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEV 750
Query: 927 KELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968
+E + I+ + L+K + A RLK+L
Sbjct: 751 EESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDL 792
>gnl|CDD|146667 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.4 bits (77), Expect = 0.37
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458
A+EE +R ++ E+ R + ++E E+ + K D + + D+FGLG
Sbjct: 264 AKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG---- 319
Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNS 505
+ +EE+ + +DE + DD E E ++ D+ D+
Sbjct: 320 --EEDEEEEEDGVDDEDE---------EDDDDDLEEEEEDVDLSDDE 355
>gnl|CDD|36509 KOG1295, KOG1295, KOG1295, Nonsense-mediated decay protein Upf3
[RNA processing and modification].
Length = 376
Score = 33.5 bits (76), Expect = 0.39
Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 25/262 (9%)
Query: 350 SKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQE 409
+ + EI + A ++ ++ KQ R +EE++RRE E
Sbjct: 106 ASKLKETLLGEIEGDTKSLAFKKVTPL----LSFIKQADKQRI---RKLRREERRRREIE 158
Query: 410 AKE-----KADREKADKEAKEKADREKADKDLQ--------EKTPIKAEGDDFGLGLPSV 456
KE K D+EK + K+ ++K DKD +K K + S
Sbjct: 159 EKENREEVKKDKEKESGKRKDTDKQKKIDKDEPRIEKEDENDKPFEKGKKILKENLKDSR 218
Query: 457 PTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNE 516
+ SV K+ E K G E E + T RK + + K+E
Sbjct: 219 QSLSVPATSKKAESSLEKPA-TSGTETREAERKEERSTPRKESNKEKRQKNKNRPKKKHE 277
Query: 517 TPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEEN 576
K P K +K+ + R K + G + + ++ +KE+ +
Sbjct: 278 EKE-SDGKRKPRSKKK---EKRERRDRGKKYTENRGFTQPEDVYKEVHRKERTSMKDRPA 333
Query: 577 LRVAEIIQQSRMQSEDLQEKAW 598
L++ ++R ++ + W
Sbjct: 334 LQLYCPGARARKRACTERLPWW 355
>gnl|CDD|34166 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 33.0 bits (75), Expect = 0.48
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
+++ +EA+ KA EK +E EK +E+AD+D +++
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427
Score = 29.9 bits (67), Expect = 4.5
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 386 SELKQATVLARANAQE---EKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
+L+ T E ++ + +EK +E+ +K+ KE+AD +K + E+
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
>gnl|CDD|38264 KOG3054, KOG3054, KOG3054, Uncharacterized conserved protein
[Function unknown].
Length = 299
Score = 33.1 bits (75), Expect = 0.57
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 396 RANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLP 454
A + +++RR Q E+A+RE + KE E+A+R+K ++ L E+ +K E
Sbjct: 108 EAKLEAKQERRAQREAEEAEREERKRKEDYEEAERKKDEERLAEEAELKEE--------- 158
Query: 455 SVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDIL 502
+ KEEE + +E K K + E + EE + + QD L
Sbjct: 159 -----EKERKAKEEEARKEHEEYLKMKAAFSVEEEGTEEVQGEEQDNL 201
>gnl|CDD|39013 KOG3809, KOG3809, KOG3809, Microtubule-binding protein MIP-T3
[Cytoskeleton].
Length = 583
Score = 32.4 bits (73), Expect = 0.75
Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 17/181 (9%)
Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADRE-KADKEAKEKADREKADKDLQEKTPIK 443
T E K+ ++ +EK ++ ++KE+ E ++ ++ EK+ + K + K K
Sbjct: 175 THERKEKEEKKKSAEPKEKDKKSSKSKERPKSEDRSSRKNSEKSSKSKKKEKSTTKEKPK 234
Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEE----ELEEVKDEGKKGKEPGTT---ETDDRE---- 492
E D+ E K E G ETD E
Sbjct: 235 KESDNLSQSKDPSEREFSTQDSMSAVNGDAPEPEMVTPNKENEAGVRPVQETDTHEISEP 294
Query: 493 ETERKNQDILDNSLLAGKTHTKNETPAIPT--AKAPPAQAHKGIQDKKPQDQREKPLASD 550
E ++ L + + T +PT + + + +RE PL +
Sbjct: 295 EVISNSESDSSAQSL---SIRQPVTSPLPTESQMGESPRMIEPEDRPSGEAKREVPLTRE 351
Query: 551 I 551
+
Sbjct: 352 M 352
>gnl|CDD|145380 pfam02194, PXA, PXA domain. This domain is associated with PX
domains pfam00787.
Length = 182
Score = 32.2 bits (74), Expect = 0.82
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 22 SEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYD-------YIVGPIEQRLKKVSER 74
S +V L + D I +R+F+ +W S ++P ++ + + + + QRL++V
Sbjct: 1 SPEVDAALEELIDLI--IRDFVQSWYSRISPDEEFPNEIRQVLRHAIRELSQRLRRV--D 56
Query: 75 YERVVSRDLTLVIEAGLKDLKE----VGDTLKRLAETGEVIL 112
+++ L ++ L+ +E V + E+ E+ L
Sbjct: 57 LADLLTDRLLPLLTKHLESFREAEAAVRNLSSSSTESEELEL 98
>gnl|CDD|38102 KOG2891, KOG2891, KOG2891, Surface glycoprotein [General function
prediction only].
Length = 445
Score = 32.2 bits (72), Expect = 0.84
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKA 444
L+ A + R ++EKQ EQ A+E+ RE+ +E + ++E+ + + E+ +
Sbjct: 315 DKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKRE 374
Query: 445 EGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482
EG L + + K++E E++K E +K KE
Sbjct: 375 EGVKL-LKFEFEKIEAREERRKQKEEEKLKAEEQKIKE 411
>gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine receptor)
[Signal transduction mechanisms].
Length = 5019
Score = 32.0 bits (72), Expect = 1.1
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 395 ARANAQEEKQRREQEAK---EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGL 451
A+A A EE+ E E K EKAD E +KE K K + E+A+ E K + +
Sbjct: 4464 AKAQAAEEEAAEEAEGKSEPEKADGEDGEKEDKAK-EEEQAEYLWDEGKKKKKQLCGHKV 4522
Query: 452 GLPSVPT 458
P
Sbjct: 4523 EEPEAFE 4529
>gnl|CDD|39983 KOG4786, KOG4786, KOG4786, Ubinuclein, nuclear protein interacting
with cellular and viral transcription factors
[Transcription, Signal transduction mechanisms].
Length = 1136
Score = 31.8 bits (71), Expect = 1.1
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 8/157 (5%)
Query: 388 LKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD-LQEKTPIKAEG 446
LK+ + +++ ++ EAK+ +R K ++E +E+ +R++ +K +E+ I
Sbjct: 692 LKKLEEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKEIMERK 751
Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
+ P ++++ E + +K T + R R + +
Sbjct: 752 KREEDDRIAAKLQLSCQAPLDKKMPEAEQSKRKEHSLPRTSAEARRAVPRPGPIKMMRA- 810
Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQR 543
+ E P PPA +GIQ K P D
Sbjct: 811 -QQLQRRQEEAPP-----PPPANHLQGIQVKPPVDHS 841
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 31.7 bits (72), Expect = 1.2
Identities = 106/598 (17%), Positives = 216/598 (36%), Gaps = 80/598 (13%)
Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKAD-REKADKDLQEKTPIKAEGDDFGLGLPSVP 457
+ E++ R +E + + +E+ K ++ + EK K L+EK ++ + +
Sbjct: 834 TKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQ----------LQ 883
Query: 458 THSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNET 517
L EE LE ++ E ++ ++ + EE E KN ++ + + +
Sbjct: 884 AEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKE 943
Query: 518 PAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENL 577
+ K +K + + K L +I + + + KL+K++KEL+E+ L
Sbjct: 944 ----QLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS--KLSKEKKELEERIREL 997
Query: 578 RVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRF---QKYAKVFYRSYSPVDGSY 634
Q +Q+E+ + K+ + K D+++ ++ ++ ++G
Sbjct: 998 -------QDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050
Query: 635 KGTQESDKAIN---HFLDNDFG--YYRIHNFLSQWSPLGLMYEK---------------- 673
K QES + + LDN + S+ +
Sbjct: 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110
Query: 674 DELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEV--LSSKHQ 731
+EL A K + R E L K ++ A +K EV L +
Sbjct: 1111 EELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170
Query: 732 KSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDIRIKLRLYGI 791
+ + I+E+ + E L + +LQK + + K L
Sbjct: 1171 EETLDHEAQIEELRKKHADSLAE----------LQEQLEQLQKDKAKL--EKEKSDLQRE 1218
Query: 792 FQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAI 851
D+ E L + S + + + D S ++Q K D ++
Sbjct: 1219 IADLAAE---LEQLSSEKKDLEKKDKKLEAQLS-ELQLKLDEQERLRNDL--------TA 1266
Query: 852 KEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESND 911
K R E ++ AE + LS L++ + L+EL+ QL + K + +
Sbjct: 1267 KRSRLQN----ENEELSRQLEEAEAK-LSALSRDKQALESQLEELKRQLEEETREKSALE 1321
Query: 912 ERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN 969
+ E + ++L+ EA + +K +L + ++K ++ RL+EL
Sbjct: 1322 NALRQL-EHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELE 1378
Score = 30.2 bits (68), Expect = 3.9
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 858 TIYAFERSLKNQAHLNAE--------VERLSGLAQQPSDSTADLKELQTQLSRAKKYKES 909
+ A E+ K L AE L ++ + +L++L+ L + E
Sbjct: 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLE- 1487
Query: 910 NDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTR---EKLVAQLSSRLK 966
E RE K L IE ++ K +L+K + E+ +L + L+
Sbjct: 1488 -----------ELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536
Query: 967 EL 968
EL
Sbjct: 1537 EL 1538
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 31.7 bits (71), Expect = 1.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 386 SELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQE 438
E+K V R QEEK+R E + K + ++ +E+ R+ + +E
Sbjct: 1015 HEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKE 1067
>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 31.8 bits (72), Expect = 1.3
Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 13/140 (9%)
Query: 112 LSDKSDRLLCRFMDMVETEDEHKINKQ------VRDALESAGFDLESTQENIRKVESALI 165
+ LL + + +V + K++ + + D L+ AG E + +
Sbjct: 361 YGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIA 420
Query: 166 NNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPT---TFTSISKVLLKSNNM 222
DA R+ +L++ D + D + NT P I +L K+
Sbjct: 421 EVVGIDAVRYADLSRS----RDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED 476
Query: 223 QDVVFTKIKEVVKKHVNAEL 242
+ + T+ ++ + EL
Sbjct: 477 ELDLSTEADALLTELEEREL 496
>gnl|CDD|147216 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 208
Score = 31.5 bits (72), Expect = 1.3
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 395 ARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
+ + + RR + + K +++ KEAK+K D +K + + + K++
Sbjct: 1 PSSREELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSK 51
Score = 29.2 bits (66), Expect = 8.1
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 396 RANAQEEKQRREQEAKE--KADREKADKEAKEKADREKADKDLQEKTPIKAE 445
R E ++R+ ++ KE K R++A K+ + + + K+ + K+ KA
Sbjct: 4 REELLEARRRKREQRKERKKEKRKEAKKKEDAQKEEAEEVKNEENKSKKKAA 55
>gnl|CDD|38804 KOG3598, KOG3598, KOG3598, Thyroid hormone receptor-associated
protein complex, subunit TRAP230 [Transcription].
Length = 2220
Score = 31.6 bits (71), Expect = 1.4
Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 24/197 (12%)
Query: 400 QEEKQRREQEAKEKADREKADKEAKEKA----DREKADKDLQEKTPIKA-EGDDFGLGLP 454
EE+ ++ +E KE A++E+ K A+++ K D EK K E +
Sbjct: 1784 DEEEAKKAEEEKEAAEKEEESKNAEDEKNKNTAENKKDTKEGEKGKSKDKEKEGEKEKCK 1843
Query: 455 SVPTHSVKLPPKEEELEEVKD--------EGKKGKE-------PGTTETDDREETERKNQ 499
K E D E KG + PG D R +R +
Sbjct: 1844 RASPKDDVTSEKNEHHPRASDAAAALNAPETNKGMDTQNQKLAPGGRRPDPRGRRKRNSG 1903
Query: 500 DILDNSLLAG---KTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGES 556
+ T A + AP A Q + ++P S E+
Sbjct: 1904 ARPTGPRAKRANSRADTAQAAAAPTSWNAPIANQQN-PAAGHAQMRGQQPPMSQGSSDET 1962
Query: 557 DYAGIKLTKKEKELQEQ 573
++K +
Sbjct: 1963 KVHQRNPLNRKKLEKRN 1979
>gnl|CDD|146543 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.4 bits (72), Expect = 1.5
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 856 YWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDER-- 913
YW S +QA N RL L ++ + + ELQ Q+ + K +E +ER
Sbjct: 56 YW-------SFPSQAK-NKLKTRLEKLKKELEELKQRIAELQAQIEKLKVGREETEERTE 107
Query: 914 IVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVA 959
++ ++ + E+E+K+LK+ +E K +P + +K ++T+ A
Sbjct: 108 LLEELK-QLEKELKKLKAELEKYEKN--DPERIEKLKEETKVAKEA 150
>gnl|CDD|37716 KOG2505, KOG2505, KOG2505, Ankyrin repeat protein [General function
prediction only].
Length = 591
Score = 31.2 bits (70), Expect = 2.0
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 400 QEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSV 456
QE +Q ++ KEK +KA K+ K++ + + + E + + EGD LG+P V
Sbjct: 505 QEREQA--EKKKEKKANQKAKKKLKKELRKAEEKQKYAEMS--EREGDGKLLGIPPV 557
>gnl|CDD|32449 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 31.2 bits (70), Expect = 2.1
Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 36/230 (15%)
Query: 385 TSELKQATVLARANAQEEKQRREQE--------------------AKEKADREKADKEAK 424
+E ++ T +A A A + + E E A+ +A+ E +
Sbjct: 227 ENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETR 286
Query: 425 EKADREK--ADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKE 482
+A++ + A++ +QE+ +AE + V L +++E E E
Sbjct: 287 REAEQAEILAEQAIQEEK-AQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFIN 345
Query: 483 PGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQ 542
+ + E K + + G A T +A A+ + + +Q
Sbjct: 346 AAQRQ----AQEEAKA--AANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQ 399
Query: 543 REKPLA----SDIGVGESDYAGIKLT---KKEKELQEQEENLRVAEIIQQ 585
+ +A + E+ A IK +EK E E +AE IQ
Sbjct: 400 EQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQV 449
>gnl|CDD|114398 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 30.8 bits (69), Expect = 2.2
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 400 QEEKQRREQEAKEKADREK-ADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPT 458
QEE++RREQE +++ +RE+ + A+E+ RE+ + +E+ + E
Sbjct: 41 QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKE------------- 87
Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQD 500
K +EEE +E +++ + K+ E REE ER +
Sbjct: 88 EKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLE 129
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 30.8 bits (69), Expect = 2.5
Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 457 PTHSVKLPPKEEELEEVKDE------GKKGKEPGTTETDDREETERKNQDILDNSLLAGK 510
+ EE+LE+V+++ GKKGK G E+ +N+D D +A
Sbjct: 2 GKKKERFDDDEEQLEKVQEKKPSKKGGKKGKRGGGGGDSSDEDVTTRNRDNEDLESIASS 61
Query: 511 THTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKP----LASDIGVGESDYAGIKLTKK 566
+K +T AK + KG ++ D+ EKP A+D+ + D A K
Sbjct: 62 NQSKQQTAGKKQAK----KGKKGKRNNDWSDEDEKPEKSLPANDLDDEDDDEAAKKPQPS 117
Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKA 597
+K + +++N + + + ++++ A
Sbjct: 118 KKNKKNKKKNDDFSLDLDDLDNEEDEVEVVA 148
>gnl|CDD|34946 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.5 bits (68), Expect = 2.6
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 17/210 (8%)
Query: 402 EKQRREQEAKEKADREKADKEAKEKA-DREKADKDLQEKTPIKAEGDD--FGLGLPSVPT 458
E ++ + K+ + E+ D+E + A D+ K D E+ AEG L S
Sbjct: 220 EPVKKHSDVKDPKEDEELDEEEHDSAMDKVKLDLFADEEDEPNAEGVGEASDKNLSSFEK 279
Query: 459 HSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETP 518
+++ + EELE+ K+ K G R + NSLLA + K
Sbjct: 280 QQIEMDEQIEELEKELVAPKEWKYAGEVSAKKRPK----------NSLLAEELEFKQGAK 329
Query: 519 AIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLR 578
+P + ++ + I ++ ++ A I + I E EL E + L
Sbjct: 330 PVPVSTKEDTESLEDIILQRIREGTFDDHAYRIREEVT----IADEIPEFELLESKSILS 385
Query: 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLS 608
+AE + MQ D + + K +
Sbjct: 386 LAEEYEGDLMQIVDESALSEELDKGHNEIF 415
>gnl|CDD|39565 KOG4364, KOG4364, KOG4364, Chromatin assembly factor-I [Chromatin
structure and dynamics].
Length = 811
Score = 30.9 bits (69), Expect = 2.6
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%)
Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
++ R+ E +EK +E+ + +EK +EK K+ ++ IK E +
Sbjct: 249 LKQLRKNMEEREKERKERERQVLEEKRLKEKEQKEEKKA--IKEENNKEKEETKLEKDIK 306
Query: 461 VKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAI 520
+ KE+E + KDE +K K+ + + ERK + + K +K
Sbjct: 307 KQQKEKEKEEKRRKDEQEKLKKQEEKQ-KRAKIMERKEEKSRKSDEERKKLESKEVEAQE 365
Query: 521 PTAKAPPAQAHKGIQDKKPQDQREKPLASDIG 552
K A+ K Q +
Sbjct: 366 LRKKRHEAEIGKFFQKIDNKFSTTCEATVSDI 397
Score = 28.9 bits (64), Expect = 8.9
Identities = 9/53 (16%), Positives = 32/53 (60%)
Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
E ++ + + ++E++ ++ KE+ ++EK + + ++ +++ +K+ +EK
Sbjct: 265 ERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEK 317
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 30.7 bits (70), Expect = 2.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 368 KAETRLAYSTIANVANFTSELKQA-------TVLARANAQEEKQRREQEAKEKADREKAD 420
+AE RL + A +L QA A+ AQ+ K+ EA++ A+R
Sbjct: 41 EAEERLKQAAALL-AEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLES 99
Query: 421 KEAKEKADREKADKDLQEK 439
A+ + ++E+A +L+++
Sbjct: 100 ARAEIEQEKEQALAELRQQ 118
>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
[Cytoskeleton].
Length = 1259
Score = 30.4 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD 435
+ EEK+RRE+E K++A E K E+ R+ +++
Sbjct: 938 KRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEE 977
>gnl|CDD|32843 COG3027, COG3027, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 105
Score = 30.3 bits (68), Expect = 3.6
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 336 GVTYDQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA 395
+Q + LR A + D E++ N RLA NV + +LK+
Sbjct: 16 NCPEEQEEHLRQAARLL--DDKVRELKESNGVLDTERLAVMAALNVMHELLKLKEKLRDI 73
Query: 396 RANAQEEKQRREQEAKEKADREKAD 420
A+ E++ R+ +A E A A
Sbjct: 74 EASL-EQRIRKLDQALENALTTLAQ 97
>gnl|CDD|37474 KOG2263, KOG2263, KOG2263, Methionine synthase II
(cobalamin-independent) [Amino acid transport and
metabolism].
Length = 765
Score = 30.0 bits (67), Expect = 4.0
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 347 DLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLA--RANAQEEKQ 404
DL ++ K D AEI+ F A+ + V L V A ANA
Sbjct: 337 DLINETKLD---AEIKSWLAFAAQK------VVEVNALAKALSGQKVEALFEANAAALAS 387
Query: 405 RREQ----EAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHS 460
RR + +A A D Q+K L LP +PT +
Sbjct: 388 RRSSPRVTNEAVQKRVAAVKGSDHRRATPVSARLDAQQKK----------LNLPLLPTTT 437
Query: 461 VKLPPKEEELEEVKDEGKKGK 481
+ P+ +EL V+ E K K
Sbjct: 438 IGSFPQTKELRRVRREFKAKK 458
>gnl|CDD|112104 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein.
Length = 222
Score = 29.8 bits (67), Expect = 4.4
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQR 615
K +E EN + Q + + + YKE + +P +IK R
Sbjct: 8 LKVAEEPGENPGRPKRYTQIKTPPREPSCVTYHGYKEKEDKNPGDIKLR 56
>gnl|CDD|48213 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology..
Length = 196
Score = 29.8 bits (67), Expect = 4.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 397 ANAQEEKQRREQEA-KEKADREKADKEAKEKADREKAD 433
A E KQ +QEA + K EKA++E + R + +
Sbjct: 155 TKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGE 192
>gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 30.1 bits (67), Expect = 4.6
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441
+ E++ A + + A+ +K+ EA+ +A E + +A A+ + + +
Sbjct: 169 IDPPEEVQAA-MEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVI 227
Query: 442 IKAEGD 447
+AE D
Sbjct: 228 ARAEAD 233
>gnl|CDD|37623 KOG2412, KOG2412, KOG2412, Nuclear-export-signal (NES)-containing
protein/polyadenylated-RNA export factor [RNA processing
and modification].
Length = 591
Score = 30.0 bits (67), Expect = 4.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 387 ELKQATVLARANAQE-EKQRREQEAKEKADREKADKEAKEKADREKAD-KDLQEKTPIKA 444
E + A QE EK R E+E +E+ +E ++ KE D + + K ++K I+
Sbjct: 235 EELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEKLAEQKAVIEK 294
Query: 445 EGDDF 449
Sbjct: 295 VTTSS 299
Score = 29.6 bits (66), Expect = 5.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 396 RANAQEEKQRREQEAKEKADREKA-----DKEAKEKADREKADKDLQEKTPIKAE 445
R QEE +++E E E ++EK +E + K E+A+K++Q+ + +
Sbjct: 230 RRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEEQAEKEVQDPKAHEEK 284
Score = 29.3 bits (65), Expect = 6.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 401 EEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
E K+R QE + + E+A+ + +EK E+ ++ + K
Sbjct: 227 ERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERK 265
>gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit
a (eIF-3a) [Translation, ribosomal structure and
biogenesis].
Length = 988
Score = 30.0 bits (67), Expect = 4.7
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 394 LARANAQEEKQRREQEAK----EKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDF 449
A+ A+E++Q RE E K EK +RE +++A R+K K+ E+ G
Sbjct: 591 EAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKG 650
Query: 450 GLGLPSVPTHSVKLPP-KEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506
G + K ++EE++ E K E R + + K D L+ +
Sbjct: 651 GKEKDLEDLEKLDADQIKARQIEELEKERK--------ELQSRLQYQEKKIDHLERAK 700
>gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin
binding snw family nuclear protein [RNA processing and
modification, Chromatin structure and dynamics].
Length = 506
Score = 29.7 bits (66), Expect = 5.1
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445
E++ L R A++EK+ +EQ+ +E A + + ++ + EK D++ + + I+ +
Sbjct: 297 EVRMRAQLERKMAEKEKEEKEQKLRELAQKAREERGGPQTGAIEKEDREARTREEIRRD 355
>gnl|CDD|38785 KOG3578, KOG3578, KOG3578, Uncharacterized conserved protein
[Function unknown].
Length = 1058
Score = 29.7 bits (66), Expect = 5.2
Identities = 48/304 (15%), Positives = 93/304 (30%), Gaps = 42/304 (13%)
Query: 701 KNAVDAMSKAVEAGESSVRKHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGK 760
+ + + E F+ K + A++ + V E K+
Sbjct: 403 DEMLKEVKRLCE--HLKTIMLEFQ---QKKRDQTEAISKLPQWGKQKVIHDVSELKKKCI 457
Query: 761 SESYLS----DIRSELQKVNKTVMDIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGD 816
+ + I IK RL T ++ + IL+
Sbjct: 458 RIKETITRDLYLLIRSKLAEDHFNGIEIKQRL---------------TFVNLALAILRAI 502
Query: 817 YTFPPLSSLDVQSKFD--SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNA 874
T L ++S D S+ S+ + W K A + + + + +
Sbjct: 503 ETVKRLELFLIKSVLDNWSTISEGSFLARQQWR----KHMLRILSEARKSYVSSVSKNIS 558
Query: 875 EVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFER-EIKELKSVI 933
+ER + Q S + E Q ++ K+S +E I S + E L++ +
Sbjct: 559 VIERATYRLQNLVSSFYHIAEAQAMFRGSRCIKQSANEMIPSRLVVLGEAYLRGRLETHL 618
Query: 934 EADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFEYPLG 993
+ N+K Q L +L + ++L A+ ++ Y L
Sbjct: 619 SSP---------NRKPFQDLMNDL--ELFNSPRQLLQKAAFTGILLSHSNYLPHTFYNLT 667
Query: 994 TYEP 997
TY
Sbjct: 668 TYAK 671
>gnl|CDD|37351 KOG2140, KOG2140, KOG2140, Uncharacterized conserved protein
[General function prediction only].
Length = 739
Score = 29.6 bits (66), Expect = 5.3
Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 15/165 (9%)
Query: 389 KQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDD 448
K+++V + +R + + RE + + E+ +EK D D Q T +
Sbjct: 1 KESSVQPDKPSTSSDKRASRSQSPRESREVSRETENERKIKEKDDGDDQPGTL------N 54
Query: 449 FGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLA 508
+ H + +E E + +R+ +
Sbjct: 55 SYRERETSSGHERRKETRESRSERESPVRSRSPRRSARSPSRSPRRKRERSSSRKDEEKP 114
Query: 509 GKTHTKNETPAIPTAKA-----PPAQ---AHKGIQDKK-PQDQRE 544
+ + + + PPA+ I DK + QR
Sbjct: 115 KPKKKELDPLDLLRTRTGGAYIPPAKLRMMQAQITDKNSIEYQRM 159
>gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.5 bits (66), Expect = 5.4
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKA 432
S LK +A A A K R A E A EAK + K
Sbjct: 233 ESRLKN--EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKP 278
>gnl|CDD|33091 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
transport and metabolism].
Length = 889
Score = 29.6 bits (66), Expect = 5.6
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 800 PPLYTIISGSEKILQGDYTFPPLSSLDVQSKFD-----------SSYSKLFEIFYGDWTN 848
P Y ++ EKIL D P ++D + +D + Y ++
Sbjct: 324 PDRYIVV---EKILAVDEPLPEDWAVDGTTGYDFLNELNGVLVDPAGESELTQLYLTFSG 380
Query: 849 NAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRA 903
+ +E +Y + + Q +L E+ RL+ L + + + A + L RA
Sbjct: 381 RPV-DEYPALLYQAKLLVLVQ-NLAGELRRLARLLLRIASADAAANDFTVNLIRA 433
>gnl|CDD|35564 KOG0343, KOG0343, KOG0343, RNA Helicase [RNA processing and
modification].
Length = 758
Score = 29.6 bits (66), Expect = 6.1
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 385 TSELKQATVLARANAQEEKQRREQEAKEKADREKA-DKEAKEKADREKADKDLQEKTPIK 443
L++A + +E+K+R +++ KEK + ++ E+A+ E+A+ + ++ +
Sbjct: 635 GINLEKAKAELKEEDKEDKKRFKEKRKEKRREKLEKERRRAEEANEEEAEAEEEDGDFVD 694
Query: 444 AEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILD 503
G + + +P KE + +E +GK D + E N + D
Sbjct: 695 WSGSEDDPDISWLPDPDKVRKKKESDSDEN-----EGKIQSALAADGIK--EVSNSSVED 747
Query: 504 NSLLAGK 510
LA K
Sbjct: 748 VEPLALK 754
>gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved
in cell cycle control [Signal transduction mechanisms,
Cell cycle control, cell division, chromosome
partitioning].
Length = 520
Score = 29.6 bits (66), Expect = 6.3
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
+ +E +R+++ A+EK +R+K KEAK + + K K ++++
Sbjct: 470 DIREHAKRKKKTAREKKERKKKVKEAKREKRKTKIPKHVKKR 511
>gnl|CDD|38255 KOG3045, KOG3045, KOG3045, Predicted RNA methylase involved in rRNA
processing [RNA processing and modification].
Length = 325
Score = 29.6 bits (66), Expect = 6.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 463 LPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTK-----NET 517
L E LE+V++ KK E T+ E+ ++K + L K + E
Sbjct: 6 LHVPAEALEKVENWLKKPSEKPTSSKTKEEKKKKKRKKGERK--LKAKKAAELKENVEEP 63
Query: 518 PAIPTAKAPPAQAHKGIQDKKPQDQREKP 546
P AK+ P + K + + + ++EKP
Sbjct: 64 PLGSEAKSSPKENSKKKRRNETKKKKEKP 92
>gnl|CDD|146000 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.3 bits (65), Expect = 6.3
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 405 RREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
++ +EA EKA RE A+++A+E+ +REK + +E+
Sbjct: 579 KKREEAVEKAKRE-AEQKAREEREREKEKEKERER 612
Score = 28.9 bits (64), Expect = 8.6
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 396 RANAQEEKQRR-EQEAKEKADREKADKEAKEKADREKADK 434
R A E+ +R EQ+A+E+ +REK ++ +E+ +A++
Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
>gnl|CDD|37477 KOG2266, KOG2266, KOG2266, Chromatin-associated protein Dek and
related proteins, contains SAP DNA binding domain
[Chromatin structure and dynamics].
Length = 594
Score = 29.4 bits (65), Expect = 6.4
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVP 457
E+K + E E A A + +EK + ++ +E E + S
Sbjct: 36 GVDEDKSKDAAEKPEDASESMATETVEEKTPEDDSEAKTKESDAAPKEEKE---IKESEK 92
Query: 458 THSVK--LPPKEEELEEVKDEGK--KGKEPGTTETDDREETERKNQDILDNSLLAGKTHT 513
+ + K+EE EE +DE + + +E + D +E ++ + + K+
Sbjct: 93 KDEKEESMDEKDEEKEEDEDEPEEDEKEEGEDDKEDKKEPSKDSEKRGKGATKSRPKSKA 152
Query: 514 KNETPAIPTAKA 525
E P
Sbjct: 153 DEEKKPEPKTPF 164
>gnl|CDD|37784 KOG2573, KOG2573, KOG2573, Ribosome biogenesis protein -
Nop56p/Sik1p [RNA processing and modification,
Translation, ribosomal structure and biogenesis].
Length = 498
Score = 29.2 bits (65), Expect = 7.7
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 366 RFKAETRLAYSTIANVANFTSE-LKQATVLARANAQEEKQRREQEAKEKADREKADKEAK 424
R + E RL + S+ +K+A +++ E AKEK ++++ ++ K
Sbjct: 400 REQVEERLEFYETGEAPRKNSDVMKEAMEAYNGISRDSAPEDEASAKEKPEKDEEKEKKK 459
Query: 425 EKADREKADKDLQEKTPIKAEGDD 448
EK +++ + EK AE DD
Sbjct: 460 EKKGKKEKRAEEGEKKNNSAERDD 483
>gnl|CDD|37037 KOG1826, KOG1826, KOG1826, Ras GTPase activating protein
RasGAP/neurofibromin [Defense mechanisms].
Length = 2724
Score = 29.2 bits (65), Expect = 8.5
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 1007 DRLHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTP 1066
D L I + +TI DP M + D + L L K FKA+ Q++
Sbjct: 1171 DLLEQIIKLVRTILDRDDDPIAMALF-STVIVDQIDELARVLVKIFKAI------IQMSK 1223
Query: 1067 AP 1068
Sbjct: 1224 MF 1225
>gnl|CDD|112811 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 28.9 bits (65), Expect = 9.6
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439
+ +QA A ++ +++ E++ ++ E + A K + E A + L E
Sbjct: 41 KARQALAQVIARQKQLERKLEEQKEQAKKLENKARAALTKGNEELAREALAEI 93
>gnl|CDD|35720 KOG0499, KOG0499, KOG0499, Cyclic nucleotide-gated cation channel
CNCG4 [Inorganic ion transport and metabolism, Signal
transduction mechanisms].
Length = 815
Score = 28.8 bits (64), Expect = 9.7
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 12/103 (11%)
Query: 368 KAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADK-EAKEK 426
++A + E +EE + R+ KE D++K ++ + KE
Sbjct: 688 TLLGLTGKMSLARLLKLKEEQAAQKKEKSEGGEEEGKERQDVQKENEDKQKDNEDKGKEN 747
Query: 427 ADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEE 469
D++K ++ L P+ +V P
Sbjct: 748 EDKDKGR-----------TPEEKPLDPPTASPIAVLEEPHSVR 779
>gnl|CDD|38748 KOG3540, KOG3540, KOG3540, Beta amyloid precursor protein [General
function prediction only].
Length = 615
Score = 28.9 bits (64), Expect = 9.7
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKE-KADREKADKDLQEK 439
VANFT+E +A + E++ R++ K + E+A+ +AK KA+++ ++ Q+
Sbjct: 241 VANFTNEHAD---FQKAKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKT 297
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.312 0.130 0.366
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 14,634,427
Number of extensions: 788875
Number of successful extensions: 2958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2733
Number of HSP's successfully gapped: 291
Length of query: 1246
Length of database: 6,263,737
Length adjustment: 105
Effective length of query: 1141
Effective length of database: 3,994,792
Effective search space: 4558057672
Effective search space used: 4558057672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.4 bits)