RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] (1246 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 62.3 bits (151), Expect = 7e-10 Identities = 106/708 (14%), Positives = 183/708 (25%), Gaps = 301/708 (42%) Query: 39 LREFIIAWSSDLNPHKDRYDYIVGPIEQRLKKVSERYERVVS--RDLTLVIEAGLKDLKE 96 R ++ H G +E L V + S ++ K L E Sbjct: 6 TRPLTLS-------H--------GSLEHVLL-VPTASFFIASQLQE------QFNKILPE 43 Query: 97 VGDTLKRLAETGEVILSDKSDRLLCRFMDMVETEDEHKINKQVRDALESAGFDLESTQEN 156 + E L+ +F+ V + E Q L Sbjct: 44 PTEGFAADDEPTTPAE------LVGKFLGYVSSLVEPSKVGQFDQVLNLC---------- 87 Query: 157 IRKVESALINNNMKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVL 216 + + E+ + N D H + KL TT +++ Sbjct: 88 LTEFENCYLEGN------------------DIH-----ALAAKL-LQENDTTLVKTKELI 123 Query: 217 LKSNNMQDVVFTKIKEVVKKHVNAEL-----GHRKLRGLAF-----DHTYFNDKLNQFLK 266 N + + K + KK +A G+ +L + F YF + L+ Sbjct: 124 --KNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEE-----LR 174 Query: 267 EIKNHQKEYDESEKGSSKARYHAAYAHIYWDLANDWVNGRVGDKSDEWARTSTNIASWIG 326 ++ Y Y L D + + E RT+ + Sbjct: 175 DL------YQ-----------------TYHVLVGDLI-KFSAETLSELIRTTLDAEK--- 207 Query: 327 RITRTEGLGGVTYDQIKQLRDLASKVKADY-----------------HWA---------- 359 T+GL + ++ L + ++ DY H+ Sbjct: 208 --VFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260 Query: 360 -EIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREK 418 E+R K T +S Q V A A A+ D Sbjct: 261 GELRS--YLKGAT--GHS-------------QGLVTAVAIAE-------------TD--- 287 Query: 419 ADKEAKEKADREKADKDL-------QEKTP-------IKAEGDDFGLGLPSVPTHSVK-L 463 E+ + R KA L E P I + + G+PS P S+ L Sbjct: 288 -SWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNL 344 Query: 464 PPKEEELEEVKDEGKKGKEPGTTETDDREETER---KNQDI---LDNS----LLAGKTHT 513 +E++++ + +T + + L N +++G Sbjct: 345 T--QEQVQDYVN-----------------KTNSHLPAGKQVEISLVNGAKNLVVSG---- 381 Query: 514 KNETPAIP---------TAKAPPAQAHKGI-QDKKPQDQREKPLASD----IGVG-ESDY 558 P AKAP G+ Q + P +R K S+ + S Sbjct: 382 ----PPQSLYGLNLTLRKAKAPS-----GLDQSRIPFSER-KLKFSNRFLPVASPFHSHL 431 Query: 559 AGIKLTKKEKELQEQEENLRVAEI-IQQSRMQ--------SEDLQEKAWDSYKEWKSLSP 609 L + + L + +Q DL+ S+S Sbjct: 432 ----LVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDGSDLRV-----LSG--SISE 477 Query: 610 DEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAIN----HFLDNDFG 653 + + PV + H L DFG Sbjct: 478 RIVDCIIRL----------PVKW--------ETTTQFKATHIL--DFG 505 Score = 60.7 bits (147), Expect = 2e-09 Identities = 67/497 (13%), Positives = 128/497 (25%), Gaps = 205/497 (41%) Query: 862 FERSLKNQAHLNAEVER---LSGLAQQPSDSTADLKELQTQLSRAKKY-----KESNDER 913 + + A + L +P++ A E T K+ + Sbjct: 18 HVLLVPTASFFIASQLQEQFNKIL-PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76 Query: 914 IVSFIRS------EFEREI---KELKSVIEADAKENPNPNKNQKKLQKT--------REK 956 + F + EFE ++ ++ +EN K+L K + Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136 Query: 957 LVAQLSSRL-KELNIDNA--Y------GLWNEYKEDFKASFEYPLGTYEPAILGAMKDMD 1007 + +S L + + NA G ++Y E+ + ++ TY + Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLV-------G 185 Query: 1008 RLHPIYSVSKTIQKAGGDPSLMMDYEKVEPS--DVMA----------------------- 1042 L I ++T+ + D EKV +++ Sbjct: 186 DL--IKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240 Query: 1043 -GL----------------PDDLAKRFKA------------------------------- 1054 G+ P +L K Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300 Query: 1055 -LLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEEFKRSLSSWEDEP--- 1110 +L + G P S P P + D SL + E P Sbjct: 301 TVLFFIGVRCYEAYPNTSLP---------PS-ILED------------SLENNEGVPSPM 338 Query: 1111 -RIEVERDATLPRLAKDDGSKEDEYEGGANERYVCIPSMDTSESFNSTMGKKRRIFKVVV 1169 I + T ++ + YV NS + +++ + Sbjct: 339 LSI---SNLTQEQV----------------QDYV--------NKTNSHLPAGKQVE---I 368 Query: 1170 RVINTADLEVGILGFPIVPVEELRG--------KPKTGEFEVLVPSDASLNPEIIIRQKT 1221 ++N A V + G P + L G K +G + +P + R Sbjct: 369 SLVNGAKNLV-VSG----PPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNR--- 419 Query: 1222 GGYFCLTSITA--HTQF 1236 F L + + H+ Sbjct: 420 ---F-L-PVASPFHSHL 431 Score = 58.4 bits (141), Expect = 1e-08 Identities = 102/707 (14%), Positives = 195/707 (27%), Gaps = 284/707 (40%) Query: 583 IQQSRMQSEDLQEKA---WDSYKEWKSLSP--DEIKQRFQKYAKVFYRSYSPVD--GSYK 635 ++ + A + + K L + +P + G + Sbjct: 16 LEHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAAD--------DEPTTPAELVGKFL 65 Query: 636 G---TQESDKAINHFLD------NDF--GYYR---IHNF---LSQWSPLGLMYEKDEL-- 676 G + + F +F Y IH L Q + L+ K+ + Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125 Query: 677 --HGVEAVYQKLD-----VLFRHCIENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSSK 729 + D LFR + + A+ G+ + + FE L Sbjct: 126 YITARIMAKRPFDKKSNSALFRA------VGEGNAQLV--AIFGGQGNTDDY-FEELRDL 176 Query: 730 HQ--KSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLS---DIRSELQKVNKT-----V 779 +Q ++ + IK L++ E + +I L+ + T + Sbjct: 177 YQTYHVLVG--DLIKFSAETLSELIRTTLDA---EKVFTQGLNILEWLENPSNTPDKDYL 231 Query: 780 MDIRIKLRLYGIFQDIPQEQPPL--YTIISGSEKILQGDYTFPPLSSLDVQSKF------ 831 + I I L G+ Q L Y + + K+L G + +++S Sbjct: 232 LSIPISCPLIGVIQ--------LAHYVVTA---KLL-G------FTPGELRSYLKGATGH 273 Query: 832 -------------DSSYSKLFEIFYGDWTNNAIK--EERYWTIY----AFERSLKNQAHL 872 DS +E F+ + K ++ A+ + + L Sbjct: 274 SQGLVTAVAIAETDS-----WESFF----VSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324 Query: 873 NAEVERLSGLAQQPSD--STADL--KELQTQLSRAKKY-KESNDERI-VSFI--RSEFER 924 +E G PS S ++L +++Q +++ + +++ +S + Sbjct: 325 EDSLENNEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNL-- 377 Query: 925 EIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDF 984 V+ + L L+ L++ GL ++ + F Sbjct: 378 -------VVSGPPQS-----------------LYG-LNLTLRK--AKAPSGL-DQSRIPF 409 Query: 985 ---KASFEYPLGTYEPAILGAMKDMDRLHPIYSV---SKTIQKAGGDPSLMMDYEKVEPS 1038 K F R P+ + S + A + + Sbjct: 410 SERKLKFSN-----------------RFLPV-ASPFHSHLLVPA---------SDLIN-- 440 Query: 1039 DVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSYVNPKRMHADTESDIYFEE 1098 DL K +S+ + +I P + SD+ Sbjct: 441 -------KDLVKNN---VSFNA-KDI----QI--PVY-----------DTFDGSDL---- 468 Query: 1099 FKRSLSS----------------WEDEPRIEVERDAT--LPRLAKDDGSKEDEYEGGANE 1140 R LS WE + AT L D G GGA+ Sbjct: 469 --RVLSGSISERIVDCIIRLPVKWET----TTQFKATHIL-----DFGP------GGAS- 510 Query: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGI---LGF 1184 + + T + + T G VRVI L++ GF Sbjct: 511 ---GLGVL-THRNKDGT-G---------VRVIVAGTLDINPDDDYGF 543 Score = 45.7 bits (108), Expect = 6e-05 Identities = 37/227 (16%), Positives = 61/227 (26%), Gaps = 66/227 (29%) Query: 707 MSKAVEAGESSVR---------KHSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPK 757 M S R +H V ++ + F K + T +D Sbjct: 1 MDAY------STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54 Query: 758 RGKSE---SYLSDIRSELQKVNKTVMDIRIKLRLYGIFQ-------DI--------PQEQ 799 +E +L + S ++ D + L F+ DI + Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGNDIHALAAKLLQEND 113 Query: 800 PPL----------YTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYS---KLFEIFYGDW 846 L T + + + S+L F + +L IF G Sbjct: 114 TTLVKTKELIKNYITARI----MAKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQG 164 Query: 847 TNNAIKEE-R--YWTIYA-FERSLKNQAHLNAEVERLSGLAQQPSDS 889 + EE R Y Y L + E LS L + D+ Sbjct: 165 NTDDYFEELRDLY-QTYHVLVGDL-----IKFSAETLSELIRTTLDA 205 Score = 41.5 bits (97), Expect = 0.001 Identities = 35/166 (21%), Positives = 49/166 (29%), Gaps = 63/166 (37%) Query: 429 RE-KADKDL-QEKTPI---KAE-GDDFGLGLP-SVPTHSVKLPPKEEELEEVKDEGKKGK 481 R+ KA L Q + P K + + F LP + P HS L P + + + D K Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINK--DLVKNNV 448 Query: 482 EPGT---------TET--DDREETERKNQDILDNSLLAGKTHTKNETPAI-------PTA 523 T D R + I + + I T Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSG----SISE-RI----------VDCIIRLPVKWETT 493 Query: 524 KAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKE 569 A H I D P AS +GV LT + K+ Sbjct: 494 TQFKA-TH--ILDFGPGG------ASGLGV---------LTHRNKD 521 Score = 41.1 bits (96), Expect = 0.002 Identities = 115/675 (17%), Positives = 195/675 (28%), Gaps = 285/675 (42%) Query: 429 REKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEEL---------EEVKDEGKK 479 +E+ +K L E T A D+ P+ P EL V+ Sbjct: 34 QEQFNKILPEPTEGFAADDE-----PTTP----------AELVGKFLGYVSSLVEPS--- 75 Query: 480 GKEPGTTE---------------------------TDDREETERKNQDILDN----SLLA 508 + G + + + T K ++++ N ++A Sbjct: 76 --KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133 Query: 509 GKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDI--GVGE-SDYAGIKLTK 565 + K A+ +A + + +A I G G DY Sbjct: 134 KRPFDKKSNSAL-------FRAV--------GEGNAQLVA--IFGGQGNTDDYF------ 170 Query: 566 KEKELQEQEENLR--VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKYAKVF 623 +EL++ + V ++I+ S +E L E L +K Sbjct: 171 --EELRDLYQTYHVLVGDLIKFS---AETLSE-----------LIRTT--LDAEKV---- 208 Query: 624 YRSYSPVDGSYKGTQESDKAINHFLDN-----DFGYYRIHNFLSQWSPLGLMYEKDELHG 678 ++ +G + I +L+N D Y LS P+ L G Sbjct: 209 ---FT------QGL---N--ILEWLENPSNTPDKDY-----LLS--IPISC-----PLIG 242 Query: 679 VEAVYQKLDVLFRHCI----------ENLRANKNAVDAMSKAVEAGESSVRKHSFEVLSS 728 V Q L + + E LR + A G HS Sbjct: 243 ---VIQ----LAHYVVTAKLLGFTPGE-LR------SYLKGA--TG------HS------ 274 Query: 729 KHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVMDI--RIKL 786 Q V AV I E +D + + + I + Sbjct: 275 --QGLVTAV--AIAE----------------------TDSWESFFVSVRKAITVLFFIGV 308 Query: 787 RLYGIFQDIPQEQ-PPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGD 845 R Y + P PP +I+ S + +G P L + + + ++ + + Sbjct: 309 RCY---EAYPNTSLPP--SILEDSLENNEG----VPSPMLSIS---NLTQEQVQDYV--N 354 Query: 846 WTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKK 905 TN+ + + I SL N A N V SG P S L L L +AK Sbjct: 355 KTNSHLPAGKQVEI-----SLVNGAK-NLVV---SG----PPQS---LYGLNLTLRKAKA 398 Query: 906 YKESN------DERIVSF------IRSEF--------EREIKELKSVIEADAKENPN--- 942 + ER + F + S F I + +++ + N Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK--DLVKNNVSFNAKDIQ 456 Query: 943 -P---NKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKAS----FEYPLGT 994 P + L+ + ++ + L + W E FKA+ F P G Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-----W-ETTTQFKATHILDFG-PGGA 509 Query: 995 YEPAILGAM----KD 1005 + LG + KD Sbjct: 510 ---SGLGVLTHRNKD 521 Score = 40.3 bits (94), Expect = 0.002 Identities = 76/452 (16%), Positives = 135/452 (29%), Gaps = 176/452 (38%) Query: 1 MNELATSIDYQT-NNLDQDKIPSEDVAKTLTSI----QDNIKHL-REF-IIAWSSDLNPH 53 EL YQT + L D I A+TL+ + D K + I+ W + + Sbjct: 170 FEELRDL--YQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225 Query: 54 KDRYDYIVG-PIEQRLKKVSE--RYERVVSRDLTLVIEAGLKDLKEVGDTLKRL-AETGE 109 D+ DY++ PI L V + Y V ++ L G G+ L TG Sbjct: 226 PDK-DYLLSIPISCPLIGVIQLAHY-VVTAKLL------GF----TPGELRSYLKGATGH 273 Query: 110 ---VILSDKSDRLLCRFMDMVETEDEHKINKQVRDALE---SAGFDLESTQ--------E 155 ++ + + ++ + VR A+ G + + Sbjct: 274 SQGLVTA--------VAIAETDSWES--FFVSVRKAITVLFFIG--VRCYEAYPNTSLPP 321 Query: 156 NIRKVESALINNN-----MKDAFRFLELAQKSKETADSHIIEAIDVGTKLKENTPPTTFT 210 +I +E +L NN M L ++ ++E ++ K + P Sbjct: 322 SI--LEDSLENNEGVPSPM------LSISNLTQEQVQDYV-------NKTNSHLPAGKQV 366 Query: 211 SISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGH-RKLRGLAFDHTYFNDKLNQFLKEIK 269 IS V N +++V + G + L GL N L++ K Sbjct: 367 EISLV----NGAKNLVVS--------------GPPQSLYGL-----------NLTLRKAK 397 Query: 270 NHQKEYDESEKGSSK-------------ARYHAAYAHIYWDL--ANDWVNGRVGDKSDEW 314 D+S S+ + +H+ L A+D +N + + + Sbjct: 398 APSGL-DQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASDLINKDLVKNNVSF 450 Query: 315 A-----------RTSTNI----ASWIGRITR---TE------------------------ 332 +++ S RI Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510 Query: 333 GLGGVTYDQIKQ---LR-----DLASKVKADY 356 GLG +T+ + K +R L DY Sbjct: 511 GLGVLTH-RNKDGTGVRVIVAGTLDINPDDDY 541 Score = 39.9 bits (93), Expect = 0.004 Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 49/285 (17%) Query: 144 ESAGFDLESTQENIRKVESALINNNMKDAFRF--LELAQKSKETADSHIIEAIDVGTKLK 201 + G DL T + + V + +N+ KD + F L++ + H + G +++ Sbjct: 1629 QGMGMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHF--GGEKGKRIR 1685 Query: 202 ENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNAELGHRKLRGLAFDHTYFNDKL 261 EN F +I LK+ +F +I E H + R +GL T F Sbjct: 1686 ENYSAMIFETIVDGKLKTEK----IFKEINE----H-STSYTFRSEKGL-LSATQFTQPA 1735 Query: 262 NQFL-----KEIKNHQK-EYDESEKGSSKARYHAAYAHIYWDLAND-------WVNG--- 305 + +++K+ D + G S Y AA A + D+ + + G Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEY-AALASLA-DVMSIESLVEVVFYRGMTM 1793 Query: 306 RVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHW-AEIRHG 364 +V DE R++ G I G ++ Q + L+ + +V W EI + Sbjct: 1794 QVAVPRDELGRSN------YGMIAINPGRVAASFSQ-EALQYVVERVGKRTGWLVEIVNY 1846 Query: 365 N----RFKAETRL-AYSTIANVANFTSELKQATV--LARANAQEE 402 N ++ A L A T+ NV NF +L++ + L ++ + EE Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFI-KLQKIDIIELQKSLSLEE 1890 Score = 30.7 bits (69), Expect = 2.1 Identities = 59/289 (20%), Positives = 95/289 (32%), Gaps = 118/289 (40%) Query: 24 DVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDY------IVGPIE-------QRLKK 70 D+ KT + QD W+ N KD Y + I P+ ++ K+ Sbjct: 1634 DLYKTSKAAQD----------VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683 Query: 71 VSERY-----ERVVS---------------------RD--------------LTLVIEAG 90 + E Y E +V R LTL+ +A Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743 Query: 91 LKDLKEVG----DTLKRLAETGE-VILSDKSDRLLCRFMDMVETEDEHKINKQV---RDA 142 +DLK G D GE L+ +D + +VE + QV RD Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIESLVEVVFYRGMTMQVAVPRDE 1801 Query: 143 LE--------------SAGFDLESTQ---ENIRK-----VESALINNNMKDAFRFLELAQ 180 L +A F E+ Q E + K VE ++N N+++ Q Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVEN--------Q 1851 Query: 181 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKV----LLKSNNMQDV 225 + D + A+D T + F + K+ L KS ++++V Sbjct: 1852 QYVAAGD---LRALDTVTNV------LNFIKLQKIDIIELQKSLSLEEV 1891 Score = 29.5 bits (66), Expect = 4.2 Identities = 22/149 (14%), Positives = 38/149 (25%), Gaps = 52/149 (34%) Query: 1074 SFEVSSYVNPKRMH--ADTESDIYFEEFKRSLSS------WEDEPRIEVERDATLPRLAK 1125 S E V P A + +F + L +DEP E L + K Sbjct: 15 SLEHVLLV-PTASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAE----L--VGK 63 Query: 1126 ---------DDGSK--------------EDEYEGGANERYVCIPSMDTSESFNSTMGKKR 1162 + E+ Y G N+ + + +T+ K + Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQEND--TTLVKTK 120 Query: 1163 RIFKVVVRVINTADLEVGILGFPIVPVEE 1191 + K + A + P Sbjct: 121 ELIKNYIT----A---RIMAKRPFDKKSN 142 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 39.9 bits (92), Expect = 0.004 Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 13/80 (16%) Query: 553 VGESDYAGIKLTKKEKELQE--QEENLRVAEIIQQSRMQSEDLQEKAWDSYKEW-----K 605 + ++D +LT++ + +++ +E+ R+ E+ S++ ++ +EKA +EW + Sbjct: 74 IAQAD----RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129 Query: 606 SLSPDEIKQRFQKYAKVFYR 625 + ++I R K FY+ Sbjct: 130 QVEKNKINNRIAD--KAFYQ 147 Score = 36.1 bits (82), Expect = 0.046 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 394 LARAN--AQE-EKQR--REQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445 +A+A+ QE E R RE++ K + + A K E+ REKA KDL+E ++E Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASK-VMEQEWREKAKKDLEEWNQRQSE 129 Score = 31.1 bits (69), Expect = 1.5 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 13/53 (24%) Query: 400 QEEKQRR-----------EQEAKE--KADREKADKEAKEKADREKADKDLQEK 439 +EE+++R EQE +E K D E+ ++ E+ ++ K + + +K Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143 Score = 29.9 bits (66), Expect = 4.0 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 11/70 (15%) Query: 115 KSDRLLCRFMDMVETEDEHKINKQVRDAL---------ESAGFDLES-TQENIRKVESAL 164 ++DRL + + +E + Q DA E A DLE Q +VE Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135 Query: 165 INNNMKD-AF 173 INN + D AF Sbjct: 136 INNRIADKAF 145 Score = 29.1 bits (64), Expect = 5.8 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 53/129 (41%) Query: 310 KSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDL--ASKVKADYHWAEIRHGNRF 367 ++D + +I W R E Q K+L++L ASKV + W E Sbjct: 76 QADRLTQEPESIRKW-----REE--------QRKRLQELDAASKV-MEQEWRE------- 114 Query: 368 KAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKA 427 KA+ L +E QR+ E+ ++ K + +KA Sbjct: 115 KAKKDL--------------------------EEWNQRQS----EQVEKNKINNRIADKA 144 Query: 428 DREKADKDL 436 ++ D D+ Sbjct: 145 FYQQPDADI 153 >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus} Length = 1080 Score = 36.0 bits (82), Expect = 0.049 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 6/134 (4%) Query: 839 FEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSD----STADLK 894 I + +Y + +S+ Q H+ + R+ + Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900 Query: 895 ELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTR 954 + +L + K S + + E +I +L+ I+ KE + + L+ T Sbjct: 901 MAKRELKKLKIEARSVERYKK--LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958 Query: 955 EKLVAQLSSRLKEL 968 +L S ++ L Sbjct: 959 STETEKLRSDVERL 972 Score = 31.8 bits (71), Expect = 0.99 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 55/231 (23%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEG 446 ELK+ + AR+ + +K E K + K D++ KE + +L+ Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT------- 957 Query: 447 DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSL 506 E E+++ + + +E + ++ + L Sbjct: 958 -------------------YSTETEKLRS-----------DVERLRMSEEEAKNATNRVL 987 Query: 507 LAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKK 566 + K + H+ +KK ++ + S +L ++ Sbjct: 988 SLQEEIAKLR-----------KELHQTQTEKKTIEEWADKYKHETEQLVS-----ELKEQ 1031 Query: 567 EKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQ 617 L+ ++E L I + + EK + L ++ + R+Q Sbjct: 1032 NTLLKTEKEELN--RRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 34.4 bits (78), Expect = 0.14 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 24/123 (19%) Query: 918 IRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977 I+ E E++ LK +A+E P+ ++N+ L++TRE + + S+L+ A W Sbjct: 1260 IKDWVENELEALK----LEAEEIPSEDQNEFLLERTRE-IHNEAESQLRA-----AQQQW 1309 Query: 978 NE--YKEDFK-ASFEYPLGTYEPAI--LGA---------MKDMDRLHPIYSVSKTIQKAG 1023 YK D + A L TY I LG D + I + K + ++ Sbjct: 1310 GNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSE 1369 Query: 1024 GDP 1026 G+P Sbjct: 1370 GNP 1372 Score = 31.3 bits (70), Expect = 1.2 Identities = 77/351 (21%), Positives = 130/351 (37%), Gaps = 83/351 (23%) Query: 298 LANDWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYH 357 L N W S+ WA T + IG T G G ++ + I +A ++ Sbjct: 650 LFNRW-------HSESWANQLTVCGAIIGW---TRGTGLMSANNI-----IAEGIE---- 690 Query: 358 WAEIRHGNRFKAETRLAYSTIANVA--------------------NFTSELKQATVLARA 397 + G R ++ +A++ + + F ELK+ T R Sbjct: 691 ----KMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRK 746 Query: 398 NAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSV- 456 E + R+ + E A K AD A ++Q + I+ L P + Sbjct: 747 ELVETSEVRKAVSIETALEHKVVN--GNSADAAYAQVEIQPRANIQ-------LDFPELK 797 Query: 457 PTHSVK-LPPKEEE----LEEV-KDEGKKGKEP-GTTETDDREETERKNQDILDNSL--- 506 P VK + P E E LE V G P G+ T R E E + L+ + Sbjct: 798 PYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSART--RWEMEAFGEFSLEGCVEMA 855 Query: 507 -LAG--KTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKL 563 + G H N K P + K+P D ++ + + E ++GI+L Sbjct: 856 WIMGFISYHNGN-------LKGRPYTGWVDSKTKEPVDDKDVKAKYETSILE--HSGIRL 906 Query: 564 TKKEKELQEQEENLRVAEIIQQSRMQSEDLQ--EKAWDSYKEWKSLSPDEI 612 E EL N E+IQ+ ++ EDL+ E + ++ +++K D++ Sbjct: 907 I--EPELFNG-YNPEKKEMIQEVIVE-EDLEPFEASKETAEQFKHQHGDKV 953 Score = 30.6 bits (68), Expect = 2.5 Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 558 YAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQ 617 Y +L +E ++++ EN A ++ + SED E + +E + + +++ Q Sbjct: 1248 YRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQ 1307 Query: 618 KYAKVFYR---SYSPVDGS 633 ++ FY+ +P+ G+ Sbjct: 1308 QWGNDFYKRDPRIAPLRGA 1326 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Length = 505 Score = 34.6 bits (79), Expect = 0.15 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 32/282 (11%) Query: 380 NVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 V + K + + + + D + ++AK++A+ + Sbjct: 154 GVRPYVGSEKAKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVR 213 Query: 440 TPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQ 499 L ++ + + +E ++ + Sbjct: 214 KFDVDVEQ------------FHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDH 261 Query: 500 DILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYA 559 + A + + KA + ++ A+++ + Sbjct: 262 KTPEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVISDIGNKV 321 Query: 560 GIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKE---------------- 603 G L K L + + + Q ++S D + + Sbjct: 322 GDYLGDAYKSLAREIADD--VKNFQGKTIRSYDDAMASLNKVLSNPGFKFNRADSDALAN 379 Query: 604 -WKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAI 644 W+S+ ++ + +K F + V K ++S + Sbjct: 380 VWRSIDAQDMANKLGNISKAF-KFADVVMKVEKVREKSIEGY 420 >2j1d_G DAAM1, disheveled-associated activator of morphogenesis 1; alternative splicing, coiled coil, actin assembly, formin, FH2 domain, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Score = 33.5 bits (76), Expect = 0.28 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 381 VANFTSELKQA-----TVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKD 435 F + +A + + +E + R E + KE+ +RE+ ++AKE ++ D Sbjct: 381 FDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440 Query: 436 LQEK 439 L Sbjct: 441 LVSA 444 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 Score = 33.0 bits (75), Expect = 0.41 Identities = 9/56 (16%), Positives = 20/56 (35%) Query: 387 ELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPI 442 L+Q + +E+ + EA D + ++ + +DL + P Sbjct: 6 RLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPA 61 >3o4x_E Protein diaphanous homolog 1; autoinhibition, actin nucleator, actin binding, protein BIND; 3.20A {Mus musculus} PDB: 2bap_D Length = 467 Score = 32.8 bits (74), Expect = 0.50 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 381 VANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKT 440 + NF + QA +E ++RRE E K + + +K KE+ ++++ + L + Sbjct: 388 LHNFRNMFLQAV-------KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMN 440 Query: 441 PIKAEGDDF 449 E Sbjct: 441 AEGDETGVM 449 >2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} Length = 424 Score = 32.5 bits (74), Expect = 0.58 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 17/166 (10%) Query: 810 EKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIK-EERYWTIYAFERSLKN 868 I++ Y +P ++ K DSS + ++ W E+ + IY +R++K Sbjct: 77 NFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYF--WPTQQWPAEDTDYAIYLAKRNIKK 134 Query: 869 QAHLNA-EVERLSGLAQQPSDSTADLKELQT--QLSRAKKYKESNDERIVSFIRSE---- 921 + L E E L ++ + D +Q Q K+ ++ +R + + Sbjct: 135 KGILEEYEKENYDFLNKKINY-KWDFVIMQAKEQYRTGKERNKA--DRYA--LDCQEKAY 189 Query: 922 --FEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965 R + +V++ NPN+ +K+ K + L Sbjct: 190 WLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTAVRKEIMYYQQAL 235 >1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Score = 32.3 bits (73), Expect = 0.66 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 381 VANFTSELKQATV-LARANAQEEKQRREQEAKEKADREKADKE 422 + NF + QA + EEK RR + AKEKA++E+ +K+ Sbjct: 298 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340 >2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} Length = 303 Score = 32.3 bits (73), Expect = 0.69 Identities = 21/185 (11%), Positives = 53/185 (28%), Gaps = 8/185 (4%) Query: 791 IFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEI-FYGDWTNN 849 + ++I Q+ + + K + + F + + + D+ N Sbjct: 106 VSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQ 165 Query: 850 AIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKES 909 + S L V R+ ++ TAD + ++ Sbjct: 166 EAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKK 225 Query: 910 N------DERIVSFIRSEFER-EIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLS 962 +RI ++ + + K +SV + D + + L ++ + Sbjct: 226 GIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPRGSMAISDPN 285 Query: 963 SRLKE 967 S + Sbjct: 286 SSSVD 290 >2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Length = 117 Score = 31.7 bits (72), Expect = 1.1 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Query: 869 QAHLNAEVERLSGLAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKE 928 Q L V++ + + +++ L E+++ A YK +++ ++ + E Sbjct: 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTL----IVKTTKDKAVAE 74 Query: 929 LKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKEL 968 LK IE + +KKL + ++L AQ+ S L+ Sbjct: 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP 114 >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Length = 339 Score = 31.2 bits (70), Expect = 1.7 Identities = 8/49 (16%), Positives = 22/49 (44%) Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN 969 +FE+ I EL++ I++ + K + + +L + +++ Sbjct: 27 DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIF 75 Score = 30.0 bits (67), Expect = 3.2 Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 921 EFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965 E E +I L + D K + N ++ +L++ +L ++ + L Sbjct: 34 ELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 78 >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 Score = 31.0 bits (69), Expect = 1.9 Identities = 26/248 (10%), Positives = 71/248 (28%), Gaps = 15/248 (6%) Query: 376 STIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEK--ADREKAD 433 + + NV E+ Q + + E E + + R K + + KEK + E+ Sbjct: 72 AVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY 131 Query: 434 KDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREE 493 + + + E + + + + L E + ++ E +R Sbjct: 132 NFMNGEANAEIEDEK------QFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTH 185 Query: 494 TERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGV 553 E + AI + + D E + Sbjct: 186 AETVMVKEY-------RDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLI 238 Query: 554 GESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIK 613 G + + + + ++ + I + +++ ++ + E+++ + Sbjct: 239 GAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNA 298 Query: 614 QRFQKYAK 621 +K Sbjct: 299 LAVSVLSK 306 >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Score = 30.6 bits (68), Expect = 2.0 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 16/124 (12%) Query: 882 LAQQPSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELKSVI-------- 933 Q + ++ ++ R E ++ +R ++E+ I K I Sbjct: 611 FGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLR-QYEKSIVNYKPKIDQLEGDHQ 669 Query: 934 ---EADAKENPNPNKNQKKLQKTREKLVAQLSSRLKELN----IDNAYGLWNEYKEDFKA 986 EA +N + N + ++ E+L+ ++ + E+ +A G+ E +F+A Sbjct: 670 QIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRA 729 Query: 987 SFEY 990 SF + Sbjct: 730 SFNH 733 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Length = 327 Score = 30.5 bits (68), Expect = 2.2 Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 921 EFEREIKELKSVIE----ADAKENPNPNKNQKKLQKTREKLVAQLSSRL 965 +FE+ + E+++ IE + K + + + L+ + E+ ++ + L Sbjct: 16 DFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNL 64 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 2.3 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 19/47 (40%) Query: 945 KNQ--KKLQKTREKLVAQLSSRLKELNIDNAYGLWNEYKEDFKASFE 989 + Q KKLQ + KL A D+A L KA+ E Sbjct: 18 EKQALKKLQASL-KLYAD----------DSAPAL------AIKATME 47 Score = 30.0 bits (66), Expect = 3.5 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Query: 893 LKELQTQLSRAKKYKESNDERIVSFIRSEFE 923 LK+LQ L K Y ++D I++ E Sbjct: 22 LKKLQASL---KLY--ADDSAPALAIKATME 47 >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373 Score = 30.2 bits (66), Expect = 2.6 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Query: 117 DRLLCRFMDMVE----TEDEHKINKQVRDALESAGFDLE 151 +RL+ FM++V+ T+ E +I K + G ++ Sbjct: 6 ERLVNEFMELVQVDSETKFEAEICKVLTKKFTDLGVEVF 44 >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 Score = 30.3 bits (67), Expect = 2.8 Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 399 AQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 + E+ ++ EA+ K EK + EKA+ E + L+++ Sbjct: 362 RRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402 >1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464 Score = 29.8 bits (66), Expect = 3.7 Identities = 21/229 (9%), Positives = 60/229 (26%), Gaps = 19/229 (8%) Query: 382 ANFTSELKQATVLARANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTP 441 + +E + ARA+ +K++ + + + ++ + Sbjct: 4 VEYDNEEDSPQIDARAHRPLDKRQEAAPTLRPVAPPISGTGYQPRPPKQDKQAMKKGPII 63 Query: 442 IKAEG------DDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKGKEPGTTETDDREETE 495 G D+ G L P EL+ + +K +P + DR Sbjct: 64 YPDAGGCKHPLDELG-----------VLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKF 112 Query: 496 RKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGE 555 + + ++ + ++ + + Sbjct: 113 SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV 172 Query: 556 SDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEW 604 L KK ++L+ + + + S ++ + ++ Sbjct: 173 LRAVIDSLHKKIQKLENAIATQT--DYCRSPCVASCNIPVVSGRECEDI 219 >3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205 Score = 29.8 bits (66), Expect = 3.9 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445 + +E + +++ REKA K+ +E R+ + + A+ Sbjct: 109 QRKRLQELDAASKVMEQE-WREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157 Score = 29.4 bits (65), Expect = 4.4 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 403 KQRREQEAKEKADREKADKEAKEKADREKADKDLQE 438 ++ RE++ K + + A K +++ REKA KDL+E Sbjct: 103 RKWREEQRKRLQELDAASKVMEQE-WREKAKKDLEE 137 >2bap_D Diaphanous protein homolog 1; armadillo repeats, all helical, signaling protein; 3.30A {Mus musculus} Length = 56 Score = 29.9 bits (67), Expect = 4.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Query: 405 RREQEAKEKADREKADKEAKEKA 427 RR + AKEKA++E+ +K+ K + Sbjct: 2 RRAKLAKEKAEKERLEKQQKREQ 24 >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, merlin, actin binding, masking, regulation, SELF-inhibition cell adhesion; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Score = 29.8 bits (66), Expect = 4.5 Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 6/260 (2%) Query: 356 YHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKAD 415 A+ A A + ++++ ++AN E + + ++ Sbjct: 315 AKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ 374 Query: 416 REKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKD 475 + A +E +++ + +A E+T + L + ++ ++E+E Sbjct: 375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE-DEIRAKQEEVSRIQQEVELKDS 433 Query: 476 EGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQ 535 E ++ +E E +D + + L + H P + Sbjct: 434 ETRRLQE----EVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGG 489 Query: 536 DKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQE 595 + + ++ +L + K L++ + Sbjct: 490 GDLARGPDDLVDPVADRRTLAERN-ERLHNQLKALKQDLARSCDETKETAMDKIHRENVR 548 Query: 596 KAWDSYKEWKSLSPDEIKQR 615 + D YK + + K+R Sbjct: 549 QGRDKYKTLREIRKGNTKRR 568 >2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B Length = 551 Score = 29.3 bits (64), Expect = 5.0 Identities = 32/281 (11%), Positives = 78/281 (27%), Gaps = 25/281 (8%) Query: 340 DQIKQLRDLASKVKADYHWAEIRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANA 399 DQ+KQ +D ++ + ++ E A AN ++ +QA + N+ Sbjct: 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNS 353 Query: 400 QEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTH 459 ++ + + A E + Q + Sbjct: 354 RKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413 Query: 460 SVK-LPPKEEELEEVKDEGKKGKEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETP 518 + K + L + KK ++ + ++ + + K + K Sbjct: 414 AAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPR----------KGFKDYGHD 463 Query: 519 AIPTAKAPPAQAHKGIQDKKPQDQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLR 578 P K + ++ P+ ++ K + + + Sbjct: 464 YHPAPKTENIKGLGDLKPGIPKTPKQNGGG-------------KRKRWTGDKGRKIYEWD 510 Query: 579 VAEIIQQSRMQSEDLQEKAWDSYKEWKSLSPDEIKQRFQKY 619 ++ + ++ D Q K L + K+ +KY Sbjct: 511 -SQHGELEGYRASDGQHLGSFDPKTGNQLKGPDPKRNIKKY 550 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Length = 198 Score = 29.3 bits (65), Expect = 5.7 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEKTPIKAE 445 A+ + + EA+++A++ K EA+ A+ + + KT + E Sbjct: 12 NKEAERKIEYILNEARQQAEKIKE--EARRNAEAKAEWIIRRAKTQAELE 59 >2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A* Length = 461 Score = 28.8 bits (64), Expect = 7.1 Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 886 PSDSTADLKELQTQLSRAKKYKESNDERIVSFIRSEFEREIKELK----SVI-EADAKEN 940 P+D A +++++ L + ++ I + EI LK +V + Sbjct: 51 PADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVA-EINALKAQGDAVWPVLSYADI 109 Query: 941 PNPNKNQKKLQKTREK 956 + ++ ++ + + Sbjct: 110 KAGHVTAEQREQIKRR 125 >3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Score = 28.8 bits (64), Expect = 7.1 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 6/108 (5%) Query: 611 EIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNFLSQWSPLGLM 670 EI+ + Q + I + L L+ + P + Sbjct: 328 EIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEP---L 384 Query: 671 YEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSV 718 + L + + + + L C++ + AN + E S Sbjct: 385 IVYNILSSMRLLGRAMTNLAERCVDGIEANV---ERCRAGAEESISLA 429 >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 Length = 551 Score = 29.1 bits (65), Expect = 7.2 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 833 SSYSKLFEIFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTAD 892 Y ++++F D+ ++ + + ++ ++ + S + Sbjct: 114 LEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQSNILDGTYGHNKF 173 Query: 893 LKELQTQLSRAKK----------YKESNDERIVSFIRSEFEREIKELKSVIEA 935 + + R K+ S D+ I++F+ + F+ +I +L + E Sbjct: 174 YSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQKEN 226 >1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1 Length = 590 Score = 28.8 bits (64), Expect = 7.7 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 4/73 (5%) Query: 123 FMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALIN-NNMKDAFRFLELAQK 181 F+ +E +I + R+ S LE + + E + Sbjct: 48 FLVQIEQLINQRIEEFARNQAIS---RLEGLSNLYQIYAESFREWEADPTNPALREEMRI 104 Query: 182 SKETADSHIIEAI 194 +S + AI Sbjct: 105 QFNDMNSALTTAI 117 >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Score = 28.6 bits (63), Expect = 8.4 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 1/124 (0%) Query: 845 DWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDST-ADLKELQTQLSRA 903 DW N IK Y N + + L D + + + Sbjct: 166 DWNPNLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEE 225 Query: 904 KKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQLSS 963 +S++ + E+ + + + +A E N + + E+ +A+ + Sbjct: 226 TPEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQN 285 Query: 964 RLKE 967 L E Sbjct: 286 ALLE 289 >3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8} Length = 188 Score = 28.7 bits (64), Expect = 8.6 Identities = 13/44 (29%), Positives = 22/44 (50%) Query: 396 RANAQEEKQRREQEAKEKADREKADKEAKEKADREKADKDLQEK 439 + E Q QEA+ KA+ K + E K KA + ++ L+ + Sbjct: 9 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQ 52 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.312 0.130 0.366 Gapped Lambda K H 0.267 0.0569 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 10,542,321 Number of extensions: 511764 Number of successful extensions: 2245 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2164 Number of HSP's successfully gapped: 206 Length of query: 1246 Length of database: 5,693,230 Length adjustment: 103 Effective length of query: 1143 Effective length of database: 3,196,098 Effective search space: 3653140014 Effective search space used: 3653140014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 62 (28.0 bits)