BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] (1246 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 2569 bits (6659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1246/1246 (100%), Positives = 1246/1246 (100%) Query: 1 MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 60 MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI Sbjct: 1 MNELATSIDYQTNNLDQDKIPSEDVAKTLTSIQDNIKHLREFIIAWSSDLNPHKDRYDYI 60 Query: 61 VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 120 VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL Sbjct: 61 VGPIEQRLKKVSERYERVVSRDLTLVIEAGLKDLKEVGDTLKRLAETGEVILSDKSDRLL 120 Query: 121 CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 180 CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ Sbjct: 121 CRFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQ 180 Query: 181 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 240 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA Sbjct: 181 KSKETADSHIIEAIDVGTKLKENTPPTTFTSISKVLLKSNNMQDVVFTKIKEVVKKHVNA 240 Query: 241 ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 300 ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN Sbjct: 241 ELGHRKLRGLAFDHTYFNDKLNQFLKEIKNHQKEYDESEKGSSKARYHAAYAHIYWDLAN 300 Query: 301 DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 360 DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE Sbjct: 301 DWVNGRVGDKSDEWARTSTNIASWIGRITRTEGLGGVTYDQIKQLRDLASKVKADYHWAE 360 Query: 361 IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 420 IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD Sbjct: 361 IRHGNRFKAETRLAYSTIANVANFTSELKQATVLARANAQEEKQRREQEAKEKADREKAD 420 Query: 421 KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 480 KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG Sbjct: 421 KEAKEKADREKADKDLQEKTPIKAEGDDFGLGLPSVPTHSVKLPPKEEELEEVKDEGKKG 480 Query: 481 KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 540 KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ Sbjct: 481 KEPGTTETDDREETERKNQDILDNSLLAGKTHTKNETPAIPTAKAPPAQAHKGIQDKKPQ 540 Query: 541 DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 600 DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS Sbjct: 541 DQREKPLASDIGVGESDYAGIKLTKKEKELQEQEENLRVAEIIQQSRMQSEDLQEKAWDS 600 Query: 601 YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 660 YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF Sbjct: 601 YKEWKSLSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYRIHNF 660 Query: 661 LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 720 LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK Sbjct: 661 LSQWSPLGLMYEKDELHGVEAVYQKLDVLFRHCIENLRANKNAVDAMSKAVEAGESSVRK 720 Query: 721 HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 780 HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM Sbjct: 721 HSFEVLSSKHQKSVIAVNNFIKEITHHTRRLVKEDPKRGKSESYLSDIRSELQKVNKTVM 780 Query: 781 DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 840 DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE Sbjct: 781 DIRIKLRLYGIFQDIPQEQPPLYTIISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFE 840 Query: 841 IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 900 IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL Sbjct: 841 IFYGDWTNNAIKEERYWTIYAFERSLKNQAHLNAEVERLSGLAQQPSDSTADLKELQTQL 900 Query: 901 SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 960 SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ Sbjct: 901 SRAKKYKESNDERIVSFIRSEFEREIKELKSVIEADAKENPNPNKNQKKLQKTREKLVAQ 960 Query: 961 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1020 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ Sbjct: 961 LSSRLKELNIDNAYGLWNEYKEDFKASFEYPLGTYEPAILGAMKDMDRLHPIYSVSKTIQ 1020 Query: 1021 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1080 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY Sbjct: 1021 KAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRFKALLSWKGWHQLTPAPKISTPSFEVSSY 1080 Query: 1081 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1140 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE Sbjct: 1081 VNPKRMHADTESDIYFEEFKRSLSSWEDEPRIEVERDATLPRLAKDDGSKEDEYEGGANE 1140 Query: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1200 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE Sbjct: 1141 RYVCIPSMDTSESFNSTMGKKRRIFKVVVRVINTADLEVGILGFPIVPVEELRGKPKTGE 1200 Query: 1201 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1246 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG Sbjct: 1201 FEVLVPSDASLNPEIIIRQKTGGYFCLTSITAHTQFEGERYEHRHG 1246 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 28.5 bits (62), Expect = 0.79, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%) Query: 123 FMDMVETEDE-HKINKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQK 181 F+ ++ ED+ I K + D + +++TQ+NI+ + L N K FL L + Sbjct: 57 FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISK---FFLNLVSR 113 Query: 182 SKETADSHIIEAIDVGTKLKENTPPT 207 K+ DS I L+E P+ Sbjct: 114 -KQLCDSII-------CALREGVVPS 131 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 28.1 bits (61), Expect = 0.94, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 612 IKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFL 648 I RF + FYR +PVDGS + E+ K+ FL Sbjct: 449 IHARFGETRTRFYRFLNPVDGSVEYFNENGKSSRPFL 485 >gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 26.6 bits (57), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 13/17 (76%) Query: 330 RTEGLGGVTYDQIKQLR 346 RT+GL G+TY ++ LR Sbjct: 102 RTQGLAGITYIELSTLR 118 >gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 26.6 bits (57), Expect = 2.8, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 1186 IVPVEELRGKPKTGEFEVLVPSDASLNPEIIIRQKTGGYF 1225 ++ + LR KPK + +P + ++ I+ +T GYF Sbjct: 117 LIKFDALRKKPKKDSYLCTLPGNFDIHQPRILSPRTTGYF 156 >gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str. psy62] Length = 136 Score = 26.2 bits (56), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 22/44 (50%) Query: 1009 LHPIYSVSKTIQKAGGDPSLMMDYEKVEPSDVMAGLPDDLAKRF 1052 L PI T+ K GG SL + K+ DV+ L +AKR+ Sbjct: 44 LRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRY 87 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 25.8 bits (55), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 22/42 (52%) Query: 122 RFMDMVETEDEHKINKQVRDALESAGFDLESTQENIRKVESA 163 + +D+V E + + DAL +AGF + + K+ES+ Sbjct: 61 KHIDLVVVGPELPLVNGISDALNAAGFKVFGPSQRAAKLESS 102 >gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 269 Score = 25.0 bits (53), Expect = 8.1, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 806 ISGSEKILQGDYTFPPLSSLDVQSKFDSSYSKLFEIFYGDWTNNAIKEERYW 857 +S SEKIL G +TF + + + F S++ L + DW + +K +W Sbjct: 54 LSLSEKIL-GLFTFFLVFFMIITGFFKSAFFLLMLYSFIDWMISIMKNRAFW 104 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 25.0 bits (53), Expect = 8.1, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 925 EIKELKSVIEAD----AKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977 +++E+ + I+ + A++ PN + +++ L+ E + +SSRLK + Y W Sbjct: 2 QLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 >gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 25.0 bits (53), Expect = 8.4, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 570 LQEQEENLRVAEIIQQSRMQSEDLQEKAWDSYKEWKSL-SPDEIKQRFQK 618 + ++ L+ ++I RMQ E + S +E+K + S DE K ++ K Sbjct: 208 FHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAK 257 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.312 0.130 0.366 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 787,454 Number of Sequences: 1233 Number of extensions: 34205 Number of successful extensions: 108 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 19 length of query: 1246 length of database: 328,796 effective HSP length: 85 effective length of query: 1161 effective length of database: 223,991 effective search space: 260053551 effective search space used: 260053551 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 44 (21.6 bits)