Query         gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 80
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:08:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781207.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2j69_A Bacterial dynamin-like  86.8     1.3 3.8E-05   23.6   4.9   56    4-65    187-243 (300)
  2 >2ifo_A Inovirus; helical viru  30.6      42  0.0012   15.4   3.5   28   13-43      7-34  (46)
  3 >1a87_A Colicin N; bacteriocin  18.9      66   0.002   14.4   1.9   32   16-47    174-205 (221)
  4 >3gg2_A Sugar dehydrogenase, U  11.5      94  0.0028   13.5   1.1   32    2-33     53-84  (131)
  5 >1zrx_A Stomoxyn; helical pept  11.4      69  0.0021   14.3   0.4   13   36-48     29-41  (42)
  6 >1z64_A Pleruocidin; helix, mi  11.3 1.2E+02  0.0035   13.0   3.0   19    4-22      2-20  (26)
  7 >2q3e_A UDP-glucose 6-dehydrog  10.8 1.1E+02  0.0033   13.2   1.2   32    2-33     20-51  (113)
  8 >1qlm_A Methenyltetrahydrometh  10.4 1.3E+02  0.0037   12.9   2.5   19   42-60     34-52  (174)
  9 >1jb0_F Photosystem 1 reaction   7.7 1.6E+02  0.0047   12.3   1.1   12   27-38     17-28  (85)
 10 >1dlj_A UDP-glucose dehydrogen   7.6 1.1E+02  0.0034   13.1   0.3   32    2-33     20-51  (110)

No 1  
>>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
Probab=86.78  E-value=1.3  Score=23.57  Aligned_cols=56  Identities=25%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             57789999999999988877887-642377888887544477761453578999988657999
Q gi|254781207|r    4 WNSITSIAATVGAVVGTVATAAA-LATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEE   65 (80)
Q Consensus         4 wnsitsiaatvgavvgtvataaa-latpigwvgaavagvgaavvgagasdlamhkmreqeeee   65 (80)
                      |-++..-..+|-++-+-++.... ...||||+=   .   .+-||.+..+-++.++++...+|
T Consensus       187 ~~~~~~~~~~v~gIg~~i~~v~gi~lgp~G~aL---i---g~gvg~~qa~~~rk~~~k~~~ke  243 (300)
T 2j69_A          187 WKNILLNYFTVIGIGGIITAVTGILLGPIGFAL---L---GLGVGFLQADQARRELVKTAKKE  243 (300)
T ss_dssp             HHHHHHHHHHTTCSSTTTHHHHHHHHHHHHHHH---H---HTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899988899999987889998888877899999---9---98899997789999999999999


No 2  
>>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} (A:)
Probab=30.58  E-value=42  Score=15.45  Aligned_cols=28  Identities=39%  Similarity=0.515  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998887788764237788888754447
Q gi|254781207|r   13 TVGAVVGTVATAAALATPIGWVGAAVAGVGA   43 (80)
Q Consensus        13 tvgavvgtvataaalatpigwvgaavagvga   43 (80)
                      .||+||...   .+-++||+-.|.||-+|--
T Consensus         7 DVg~vv~AI---~aA~gPi~~IG~AVL~V~V   34 (46)
T 2ifo_A            7 DVGDVVSAI---QGAAGPIAAIGGAVLTVMV   34 (46)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH---HHCCCCHHHHHHEEEEEEE
T ss_conf             499999998---8605862331013246433


No 3  
>>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli} (A:101-321)
Probab=18.93  E-value=66  Score=14.37  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99988877887642377888887544477761
Q gi|254781207|r   16 AVVGTVATAAALATPIGWVGAAVAGVGAAVVG   47 (80)
Q Consensus        16 avvgtvataaalatpigwvgaavagvgaavvg   47 (80)
                      .++|..+....-+||+|-.|.+..++-.+.+.
T Consensus       174 ~~l~~~~~~~~~~t~igi~gi~l~~~v~a~Id  205 (221)
T 1a87_A          174 AVLSFLPISGLAVTALGVIGIMTISYLSSFID  205 (221)
T ss_dssp             HHHHTCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             99987630346403999999999999999827


No 4  
>>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} (A:172-302)
Probab=11.48  E-value=94  Score=13.53  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33577899999999999888778876423778
Q gi|254781207|r    2 GFWNSITSIAATVGAVVGTVATAAALATPIGW   33 (80)
Q Consensus         2 gfwnsitsiaatvgavvgtvataaalatpigw   33 (80)
                      .|+|.+..++...|+-+-.|..++..-.+||-
T Consensus        53 af~Nela~~ce~~g~D~~eV~~~~~~d~ri~~   84 (131)
T 3gg2_A           53 SFMNDVANLCERVGADVSMVRLGIGSDSRIGS   84 (131)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHTSTTTCS
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf             99999999743245559999999756999785


No 5  
>>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} (A:)
Probab=11.37  E-value=69  Score=14.25  Aligned_cols=13  Identities=69%  Similarity=0.889  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             8875444777614
Q gi|254781207|r   36 AAVAGVGAAVVGA   48 (80)
Q Consensus        36 aavagvgaavvga   48 (80)
                      +..+|-|++||.+
T Consensus        29 aviagsgaavvaa   41 (42)
T 1zrx_A           29 AVIAGSGAAVVAA   41 (42)
T ss_dssp             TTTGGGTHHHHHH
T ss_pred             EEEECCCCEEEEC
T ss_conf             0353586045643


No 6  
>>1z64_A Pleruocidin; helix, micelle, antimicrobial protein; NMR {Pseudopleuronectes americanus} (A:)
Probab=11.34  E-value=1.2e+02  Score=13.03  Aligned_cols=19  Identities=47%  Similarity=0.672  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             5778999999999998887
Q gi|254781207|r    4 WNSITSIAATVGAVVGTVA   22 (80)
Q Consensus         4 wnsitsiaatvgavvgtva   22 (80)
                      |.|.-.-++.||.-||..+
T Consensus         2 wgsffkkaahvgkhvgkaa   20 (26)
T 1z64_A            2 WGSFFKKAAHVGKHVGKAA   20 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             0488999999886632999


No 7  
>>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* (A:214-326)
Probab=10.80  E-value=1.1e+02  Score=13.16  Aligned_cols=32  Identities=38%  Similarity=0.417  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33577899999999999888778876423778
Q gi|254781207|r    2 GFWNSITSIAATVGAVVGTVATAAALATPIGW   33 (80)
Q Consensus         2 gfwnsitsiaatvgavvgtvataaalatpigw   33 (80)
                      .|+|.+..++...|.-+-.|..++.+-..||.
T Consensus        20 af~NEla~~~e~~giD~~eV~~a~~~d~rig~   51 (113)
T 2q3e_A           20 SSINSISALCEATGADVEEVATAIGMDQRIGN   51 (113)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHTSTTTCS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf             88999997776559977775331227998766


No 8  
>>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} (A:60-89,A:173-316)
Probab=10.43  E-value=1.3e+02  Score=12.85  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=12.0

Q ss_pred             HHHHHHCCHHHHHHHHHHH
Q ss_conf             4777614535789999886
Q gi|254781207|r   42 GAAVVGAGASDLAMHKMRE   60 (80)
Q Consensus        42 gaavvgagasdlamhkmre   60 (80)
                      |...+.+-.-..|||||-|
T Consensus        34 GSVQisaRvvE~AlhKl~E   52 (174)
T 1qlm_A           34 GSVQVSARVVETGLYKLLE   52 (174)
T ss_dssp             HHHHHHTTHHHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHH
T ss_conf             3563227899999999898


No 9  
>>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:80-164)
Probab=7.68  E-value=1.6e+02  Score=12.29  Aligned_cols=12  Identities=58%  Similarity=0.960  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             642377888887
Q gi|254781207|r   27 LATPIGWVGAAV   38 (80)
Q Consensus        27 latpigwvgaav   38 (80)
                      .|-=|||+|-.-
T Consensus        17 IAGwIGW~GR~Y   28 (85)
T 1jb0_F           17 IAGWIGWVGRAY   28 (85)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             841232443999


No 10 
>>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer; HET: NAI UGA; 1.80A {Streptococcus pyogenes} (A:197-306)
Probab=7.56  E-value=1.1e+02  Score=13.08  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33577899999999999888778876423778
Q gi|254781207|r    2 GFWNSITSIAATVGAVVGTVATAAALATPIGW   33 (80)
Q Consensus         2 gfwnsitsiaatvgavvgtvataaalatpigw   33 (80)
                      .|+|.+..++...|+-+..|..++..-.-||.
T Consensus        20 af~NEla~~ce~~giD~~eV~~~~~~d~ri~~   51 (110)
T 1dlj_A           20 AYFNELDTYAESRKLNSHMIIQGISYDDRIGM   51 (110)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCS
T ss_pred             HHHHHHHHHHHHCCCCHHEEEEHHCCCCCCCC
T ss_conf             99999998863139825447310036753102


Done!