Query gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 80 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:08:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781207.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2j69_A Bacterial dynamin-like 86.8 1.3 3.8E-05 23.6 4.9 56 4-65 187-243 (300) 2 >2ifo_A Inovirus; helical viru 30.6 42 0.0012 15.4 3.5 28 13-43 7-34 (46) 3 >1a87_A Colicin N; bacteriocin 18.9 66 0.002 14.4 1.9 32 16-47 174-205 (221) 4 >3gg2_A Sugar dehydrogenase, U 11.5 94 0.0028 13.5 1.1 32 2-33 53-84 (131) 5 >1zrx_A Stomoxyn; helical pept 11.4 69 0.0021 14.3 0.4 13 36-48 29-41 (42) 6 >1z64_A Pleruocidin; helix, mi 11.3 1.2E+02 0.0035 13.0 3.0 19 4-22 2-20 (26) 7 >2q3e_A UDP-glucose 6-dehydrog 10.8 1.1E+02 0.0033 13.2 1.2 32 2-33 20-51 (113) 8 >1qlm_A Methenyltetrahydrometh 10.4 1.3E+02 0.0037 12.9 2.5 19 42-60 34-52 (174) 9 >1jb0_F Photosystem 1 reaction 7.7 1.6E+02 0.0047 12.3 1.1 12 27-38 17-28 (85) 10 >1dlj_A UDP-glucose dehydrogen 7.6 1.1E+02 0.0034 13.1 0.3 32 2-33 20-51 (110) No 1 >>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657) Probab=86.78 E-value=1.3 Score=23.57 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 57789999999999988877887-642377888887544477761453578999988657999 Q gi|254781207|r 4 WNSITSIAATVGAVVGTVATAAA-LATPIGWVGAAVAGVGAAVVGAGASDLAMHKMREQEEEE 65 (80) Q Consensus 4 wnsitsiaatvgavvgtvataaa-latpigwvgaavagvgaavvgagasdlamhkmreqeeee 65 (80) |-++..-..+|-++-+-++.... ...||||+= . .+-||.+..+-++.++++...+| T Consensus 187 ~~~~~~~~~~v~gIg~~i~~v~gi~lgp~G~aL---i---g~gvg~~qa~~~rk~~~k~~~ke 243 (300) T 2j69_A 187 WKNILLNYFTVIGIGGIITAVTGILLGPIGFAL---L---GLGVGFLQADQARRELVKTAKKE 243 (300) T ss_dssp HHHHHHHHHHTTCSSTTTHHHHHHHHHHHHHHH---H---HTTTTSSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899988899999987889998888877899999---9---98899997789999999999999 No 2 >>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} (A:) Probab=30.58 E-value=42 Score=15.45 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998887788764237788888754447 Q gi|254781207|r 13 TVGAVVGTVATAAALATPIGWVGAAVAGVGA 43 (80) Q Consensus 13 tvgavvgtvataaalatpigwvgaavagvga 43 (80) .||+||... .+-++||+-.|.||-+|-- T Consensus 7 DVg~vv~AI---~aA~gPi~~IG~AVL~V~V 34 (46) T 2ifo_A 7 DVGDVVSAI---QGAAGPIAAIGGAVLTVMV 34 (46) T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHH---HHCCCCHHHHHHEEEEEEE T ss_conf 499999998---8605862331013246433 No 3 >>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli} (A:101-321) Probab=18.93 E-value=66 Score=14.37 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99988877887642377888887544477761 Q gi|254781207|r 16 AVVGTVATAAALATPIGWVGAAVAGVGAAVVG 47 (80) Q Consensus 16 avvgtvataaalatpigwvgaavagvgaavvg 47 (80) .++|..+....-+||+|-.|.+..++-.+.+. T Consensus 174 ~~l~~~~~~~~~~t~igi~gi~l~~~v~a~Id 205 (221) T 1a87_A 174 AVLSFLPISGLAVTALGVIGIMTISYLSSFID 205 (221) T ss_dssp HHHHTCCCTTCCHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 99987630346403999999999999999827 No 4 >>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} (A:172-302) Probab=11.48 E-value=94 Score=13.53 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=28.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33577899999999999888778876423778 Q gi|254781207|r 2 GFWNSITSIAATVGAVVGTVATAAALATPIGW 33 (80) Q Consensus 2 gfwnsitsiaatvgavvgtvataaalatpigw 33 (80) .|+|.+..++...|+-+-.|..++..-.+||- T Consensus 53 af~Nela~~ce~~g~D~~eV~~~~~~d~ri~~ 84 (131) T 3gg2_A 53 SFMNDVANLCERVGADVSMVRLGIGSDSRIGS 84 (131) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHTSTTTCS T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC T ss_conf 99999999743245559999999756999785 No 5 >>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} (A:) Probab=11.37 E-value=69 Score=14.25 Aligned_cols=13 Identities=69% Similarity=0.889 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHC Q ss_conf 8875444777614 Q gi|254781207|r 36 AAVAGVGAAVVGA 48 (80) Q Consensus 36 aavagvgaavvga 48 (80) +..+|-|++||.+ T Consensus 29 aviagsgaavvaa 41 (42) T 1zrx_A 29 AVIAGSGAAVVAA 41 (42) T ss_dssp TTTGGGTHHHHHH T ss_pred EEEECCCCEEEEC T ss_conf 0353586045643 No 6 >>1z64_A Pleruocidin; helix, micelle, antimicrobial protein; NMR {Pseudopleuronectes americanus} (A:) Probab=11.34 E-value=1.2e+02 Score=13.03 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 5778999999999998887 Q gi|254781207|r 4 WNSITSIAATVGAVVGTVA 22 (80) Q Consensus 4 wnsitsiaatvgavvgtva 22 (80) |.|.-.-++.||.-||..+ T Consensus 2 wgsffkkaahvgkhvgkaa 20 (26) T 1z64_A 2 WGSFFKKAAHVGKHVGKAA 20 (26) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 0488999999886632999 No 7 >>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* (A:214-326) Probab=10.80 E-value=1.1e+02 Score=13.16 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=27.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33577899999999999888778876423778 Q gi|254781207|r 2 GFWNSITSIAATVGAVVGTVATAAALATPIGW 33 (80) Q Consensus 2 gfwnsitsiaatvgavvgtvataaalatpigw 33 (80) .|+|.+..++...|.-+-.|..++.+-..||. T Consensus 20 af~NEla~~~e~~giD~~eV~~a~~~d~rig~ 51 (113) T 2q3e_A 20 SSINSISALCEATGADVEEVATAIGMDQRIGN 51 (113) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHTSTTTCS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC T ss_conf 88999997776559977775331227998766 No 8 >>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} (A:60-89,A:173-316) Probab=10.43 E-value=1.3e+02 Score=12.85 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=12.0 Q ss_pred HHHHHHCCHHHHHHHHHHH Q ss_conf 4777614535789999886 Q gi|254781207|r 42 GAAVVGAGASDLAMHKMRE 60 (80) Q Consensus 42 gaavvgagasdlamhkmre 60 (80) |...+.+-.-..|||||-| T Consensus 34 GSVQisaRvvE~AlhKl~E 52 (174) T 1qlm_A 34 GSVQVSARVVETGLYKLLE 52 (174) T ss_dssp HHHHHHTTHHHHHHHHHHH T ss_pred EEEEEHHHHHHHHHHHHHH T ss_conf 3563227899999999898 No 9 >>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (F:80-164) Probab=7.68 E-value=1.6e+02 Score=12.29 Aligned_cols=12 Identities=58% Similarity=0.960 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 642377888887 Q gi|254781207|r 27 LATPIGWVGAAV 38 (80) Q Consensus 27 latpigwvgaav 38 (80) .|-=|||+|-.- T Consensus 17 IAGwIGW~GR~Y 28 (85) T 1jb0_F 17 IAGWIGWVGRAY 28 (85) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 841232443999 No 10 >>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer; HET: NAI UGA; 1.80A {Streptococcus pyogenes} (A:197-306) Probab=7.56 E-value=1.1e+02 Score=13.08 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33577899999999999888778876423778 Q gi|254781207|r 2 GFWNSITSIAATVGAVVGTVATAAALATPIGW 33 (80) Q Consensus 2 gfwnsitsiaatvgavvgtvataaalatpigw 33 (80) .|+|.+..++...|+-+..|..++..-.-||. T Consensus 20 af~NEla~~ce~~giD~~eV~~~~~~d~ri~~ 51 (110) T 1dlj_A 20 AYFNELDTYAESRKLNSHMIIQGISYDDRIGM 51 (110) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCS T ss_pred HHHHHHHHHHHHCCCCHHEEEEHHCCCCCCCC T ss_conf 99999998863139825447310036753102 Done!