BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781207|ref|YP_003065620.1| hypothetical protein
CLIBASIA_05570 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781207|ref|YP_003065620.1| hypothetical protein CLIBASIA_05570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 80
Score = 156 bits (395), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE
Sbjct: 1 MGFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVAGVGAAVVGAGASDLAMHKMRE 60
Query: 61 QEEEEKKLLKKGLKKRQKNY 80
QEEEEKKLLKKGLKKRQKNY
Sbjct: 61 QEEEEKKLLKKGLKKRQKNY 80
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 23.1 bits (48), Expect = 0.98, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 52 DLAMHKMREQEEEEK 66
DL H+M E++EEEK
Sbjct: 603 DLYKHQMIEKKEEEK 617
>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 338
Score = 23.1 bits (48), Expect = 1.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 1 MGFWNSITSIAATVGAVVGTVATAAALATPIGW 33
+GF N++ +A G + A+ L PI W
Sbjct: 90 LGFDNNLIDLARKTGLFAKSNIDASQLKLPIKW 122
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 22.7 bits (47), Expect = 1.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 48 AGASDLAMHKMREQEEEEKKLLKKGLKKRQ 77
A A+D+ H + EEE + LKK L K +
Sbjct: 149 ANATDIKEHDRKLHEEEREN-LKKTLSKEE 177
>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 21.9 bits (45), Expect = 2.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 2 GFWNSITSIAATVGAVVGTVATAAALATPIGWVGAAVA 39
GF N++ I+ +G ++G IG+ G AV+
Sbjct: 343 GFINTV--ISTILGIIIGQSFNGTTYPITIGFFGIAVS 378
>537021.9.peg.410_1
Length = 952
Score = 21.6 bits (44), Expect = 2.9, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 51 SDLAMHKMREQEEEEKKLLKKGLKK 75
SDL H + +EE +LL G+ +
Sbjct: 633 SDLIKHLKKSTQEEYNRLLYVGMTR 657
>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 20.8 bits (42), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 55 MHKMREQEEEEKKLLKKGL 73
MH+ R++E + + + KKG+
Sbjct: 1 MHRKRQREIKNETVRKKGI 19
>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
Liberibacter asiaticus str. psy62]
Length = 425
Score = 20.4 bits (41), Expect = 5.8, Method: Composition-based stats.
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 38 VAGVGAAVVGA 48
VAG+G AVVG+
Sbjct: 200 VAGIGVAVVGS 210
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 20.0 bits (40), Expect = 8.7, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 56 HKMREQEEEEKKLLKKGL 73
H ++++ E EK+ L+ G+
Sbjct: 221 HNLKKKNEAEKEWLRYGV 238
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,662
Number of Sequences: 1233
Number of extensions: 1239
Number of successful extensions: 17
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 80
length of database: 328,796
effective HSP length: 49
effective length of query: 31
effective length of database: 268,379
effective search space: 8319749
effective search space used: 8319749
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)