Query gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 578 No_of_seqs 170 out of 529 Neff 8.2 Searched_HMMs 13730 Date Wed Jun 1 11:55:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781208.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2oyza1 b.82.1.22 (A:2-94) Unc 11.4 25 0.0018 10.2 3.6 21 72-92 34-54 (93) 2 d1wb9a4 d.75.2.1 (A:2-116) DNA 10.8 26 0.0019 10.1 0.7 18 350-367 22-39 (115) 3 d1gcca_ d.10.1.2 (A:) GCC-box 10.8 26 0.0019 10.1 2.1 18 46-63 4-21 (63) 4 d1ewqa4 d.75.2.1 (A:1-120) DNA 10.2 28 0.002 9.9 0.7 17 351-367 27-43 (120) 5 d1de4c1 a.48.2.1 (C:609-756) T 9.7 18 0.0013 11.3 -1.2 32 27-59 63-94 (148) 6 d1dfna_ g.9.1.1 (A:) Defensin 9.5 31 0.0022 9.6 1.6 10 336-345 18-27 (30) 7 d1yuaa2 g.41.3.3 (A:66-122) Pr 8.8 34 0.0025 9.3 2.7 28 60-87 11-38 (57) 8 d2pvaa_ d.153.1.3 (A:) Penicil 8.5 36 0.0026 9.2 6.0 26 491-518 281-306 (342) 9 d1p2za1 b.121.2.2 (A:5-650) Ad 8.3 27 0.0019 10.1 -0.7 65 16-89 19-88 (646) 10 d2hu7a1 b.69.7.2 (A:9-321) Acy 8.1 38 0.0027 9.0 5.1 39 49-90 89-137 (313) No 1 >d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]} Probab=11.39 E-value=25 Score=10.23 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=9.8 Q ss_pred EEECCCCEEEEEEECCEEEEE Q ss_conf 995699659999979969999 Q gi|254781208|r 72 FSIPDGGYALLVFGDKKLQIV 92 (578) Q Consensus 72 F~fs~~e~Yil~f~~~~irV~ 92 (578) +.|++++.=+.++-.+.++|- T Consensus 34 Y~F~T~~~E~MeivsG~l~V~ 54 (93) T d2oyza1 34 YTFGTQAPERMTVVKGALVVK 54 (93) T ss_dssp EEEEESSCEEEEEEESEEEEE T ss_pred EEECCCCCEEEEEEEEEEEEE T ss_conf 887599978999996289999 No 2 >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Probab=10.80 E-value=26 Score=10.10 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=11.2 Q ss_pred CCCCEEEEECCCCHHHCC Q ss_conf 786379983147622000 Q gi|254781208|r 350 GDELSVYLSSFGAFYDFS 367 (578) Q Consensus 350 ~~P~~I~~S~~gd~~nF~ 367 (578) ..|++|.+=|.|+|+.++ T Consensus 22 ~~pd~ill~rvG~FYE~y 39 (115) T d1wb9a4 22 QHPEILLFYRMGDFYTLF 39 (115) T ss_dssp HSTTSEEEEEETTEEEEE T ss_pred HCCCEEEEEEECCCHHHH T ss_conf 789869999968651224 No 3 >d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=10.79 E-value=26 Score=10.10 Aligned_cols=18 Identities=11% Similarity=-0.080 Sum_probs=11.8 Q ss_pred CCCEECCCCCEEEECCCC Q ss_conf 071427720210000578 Q gi|254781208|r 46 GPLVSMPLMQEYRDCRLD 63 (578) Q Consensus 46 GGl~rRPGt~fv~~l~~s 63 (578) =|+.+||.-+|.+++..+ T Consensus 4 rGVr~r~~gkw~A~Ir~~ 21 (63) T d1gcca_ 4 RGVRQRPWGKFAAEIRDP 21 (63) T ss_dssp TTEEEETTTEEEEEEEET T ss_pred CEEEECCCCCEEEEEECC T ss_conf 207688999889998047 No 4 >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Probab=10.15 E-value=28 Score=9.91 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=11.4 Q ss_pred CCCEEEEECCCCHHHCC Q ss_conf 86379983147622000 Q gi|254781208|r 351 DELSVYLSSFGAFYDFS 367 (578) Q Consensus 351 ~P~~I~~S~~gd~~nF~ 367 (578) .|++|.+-|.|+|+.++ T Consensus 27 ~~d~Ivl~qvG~FYE~Y 43 (120) T d1ewqa4 27 YPDYLLLFQVGDFYECF 43 (120) T ss_dssp CTTSEEEEEETTEEEEE T ss_pred CCCEEEEEEECCEEEEC T ss_conf 89969999828898975 No 5 >d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=9.66 E-value=18 Score=11.29 Aligned_cols=32 Identities=6% Similarity=-0.122 Sum_probs=24.0 Q ss_pred HHHHHHHHHEEEEEEEEEECCCEECCCCCEEEE Q ss_conf 899876884153149834107142772021000 Q gi|254781208|r 27 LSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRD 59 (578) Q Consensus 27 ~~ky~~g~~~~~N~i~~p~GGl~rRPGt~fv~~ 59 (578) +..+..++...|-.+.+|. |+-+||..|||-- T Consensus 63 ~R~~N~~l~~~Er~fl~~~-glp~r~~~rHvi~ 94 (148) T d1de4c1 63 MKKLNDRVMRVEYHFLSPY-VSPKESPFRHVFW 94 (148) T ss_dssp HHHHHHHHHHHHHTTBCTT-SCTTTCCCCBTTT T ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEE T ss_conf 9999999999999762866-7999974311243 No 6 >d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.50 E-value=31 Score=9.64 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=6.9 Q ss_pred EEEECCEEEE Q ss_conf 7999582899 Q gi|254781208|r 336 VTFHNNRLLF 345 (578) Q Consensus 336 v~F~~nRL~f 345 (578) ..||++|||- T Consensus 18 tc~y~gr~wa 27 (30) T d1dfna_ 18 TCIYQGRLWA 27 (30) T ss_dssp EEEETTEEEE T ss_pred EEEEECEEEE T ss_conf 6898243755 No 7 >d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]} Probab=8.78 E-value=34 Score=9.32 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=19.1 Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECC Q ss_conf 0578885379999956996599999799 Q gi|254781208|r 60 CRLDPRSNRVFSFSIPDGGYALLVFGDK 87 (578) Q Consensus 60 l~~s~~~~rlipF~fs~~e~Yil~f~~~ 87 (578) .+++.++--+|.|.+.+.|+|+..=.++ T Consensus 11 ~~D~dGn~~vvRfsRK~k~qYv~sE~dG 38 (57) T d1yuaa2 11 QQDPEGNKTMVRFSRKTKQQYVSSEKDG 38 (57) T ss_dssp SSCTTCCCEEEEEETTTTEEEEEECCTT T ss_pred CCCCCCCEEEEEEECCCCEEEEEEECCC T ss_conf 6599999769997337870888862278 No 8 >d2pvaa_ d.153.1.3 (A:) Penicillin V acylase {Bacillus sphaericus [TaxId: 1421]} Probab=8.48 E-value=36 Score=9.19 Aligned_cols=26 Identities=0% Similarity=-0.115 Sum_probs=12.1 Q ss_pred CCCCEEEEEEEECCCCCCEEEEEEEECC Q ss_conf 7887189999706777756999999836 Q gi|254781208|r 491 EEPHSIVWVVLEPKDNSFPRLLGCRFSA 518 (578) Q Consensus 491 ~~p~~~~~~v~~~~~~~dg~l~~~ty~~ 518 (578) ...+...|.+..+-+ .+.++.-+|.. T Consensus 281 ~~~~~T~wssv~dl~--~~~yy~~~y~~ 306 (342) T d2pvaa_ 281 GKTDYTIYTSAMCAQ--SKNYYFKLYDN 306 (342) T ss_dssp SCBCEEEEEEEEETT--TCEEEEEETTE T ss_pred CCCCCEEEEEEEECC--CCEEEEEECCC T ss_conf 996856999999899--99799998689 No 9 >d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]} Probab=8.30 E-value=27 Score=10.06 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=0.0 Q ss_pred ECHHHHHCCCCHHHHHHHHHEEEEEEEEEECCCEECCCCCEEEECCCCCCCEEEEEEEECCCC-----EEEEEEECCEE Q ss_conf 088784143358998768841531498341071427720210000578885379999956996-----59999979969 Q gi|254781208|r 16 LSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDCRLDPRSNRVFSFSIPDGG-----YALLVFGDKKL 89 (578) Q Consensus 16 lsP~L~~gR~D~~ky~~g~~~~~N~i~~p~GGl~rRPGt~fv~~l~~s~~~~rlipF~fs~~e-----~Yil~f~~~~i 89 (578) |||.|++=-.-.+.|.+=-.+-||=++-|+-+++ +=+.---+.|.+|....+++ +|-|..||+++ T Consensus 19 LS~~lvqf~~at~syF~l~nKFR~p~vAPT~~VT---------TerSQRLqlRfvPv~~eDt~~sYk~RftL~VGDnrV 88 (646) T d1p2za1 19 LSPGLVQFARATETYFSLNNKFRNPTVAPTHDVT---------TDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRV 88 (646) T ss_dssp SCHHHHHHHHHHTTTSCCGGGSCCCCCCCCSSSB---------CCSCCCSEEEECCSEEEECSSEEEEEEEEEECTTCC T ss_pred CCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC---------CCHHHCCEEEEECCCCCCCCCEEEEEEEEEECCCCE T ss_conf 3845677877415501456515698238888977---------304343157674674267873278999986276503 No 10 >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} Probab=8.12 E-value=38 Score=9.01 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=0.0 Q ss_pred EECCCCCEEEECCCCCCCEEEEEEEE----------CCCCEEEEEEECCEEE Q ss_conf 42772021000057888537999995----------6996599999799699 Q gi|254781208|r 49 VSMPLMQEYRDCRLDPRSNRVFSFSI----------PDGGYALLVFGDKKLQ 90 (578) Q Consensus 49 ~rRPGt~fv~~l~~s~~~~rlipF~f----------s~~e~Yil~f~~~~ir 90 (578) .||||-+|--+. +++.|+..-.. +.++.++-++.++++| T Consensus 89 lk~~GEE~~i~s---pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklr 137 (313) T d2hu7a1 89 TSRPGEEQRLEA---VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 137 (313) T ss_dssp TTSTTCEEECTT---SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE T ss_pred CCCCCEEEEECC---CCEEEEEEEEECCCEEEEECCCCCCEEEEEEECCCEE T ss_conf 588880247337---7407998865268338996556783379998289554 Done!