RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] (578 letters) >gnl|CDD|106970 PHA00661, PHA00661, hypothetical protein. Length = 734 Score = 131 bits (331), Expect = 5e-31 Identities = 117/587 (19%), Positives = 211/587 (35%), Gaps = 81/587 (13%) Query: 3 NTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDCRL 62 N + SF GE+SP L R D + + G+A RN I GP + + R + Sbjct: 2 NVRVLQRSFGGGEISP-ELFGRIDDAKYQSGLAICRNFIVKPQGPAENRAGFRFVRAVKD 60 Query: 63 DPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLE 122 + R+ F+ +L FG + + + TPY D ++ Sbjct: 61 SAKKVRLIPFTYSVTQTYVLEFGAGYFRFHTNGGTLLNGAVPY--EIATPYAEADLFNIH 118 Query: 123 YAVFGSTAVFVHKDHPPHHLL-YIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKLS 181 Y VH ++PP L ++ + F P+ + + V A Sbjct: 119 YTQSADVLTLVHPNYPPRELRRLGAT----NWQLATVTFTSGPFEDINVDTPVSVTA--- 171 Query: 182 ISQADTSTARITSDMKIFKPLDKGRSIRL----GCHPPEWAKNTNYSIGAYIVADDKVYR 237 A+T +T+ +F G+ L P W +T + + + +Y Sbjct: 172 --SANTGGTTLTASASVFALDAVGKLFYLEQPAVDSVPVWETSTESAPSSARRCTNNLYT 229 Query: 238 SLTTGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGD------ 291 + G G T+ ++ S SG + Y V+ + Sbjct: 230 NGGAGTIG--------------------TLRPSHTEGSAWDGSGGASRYNVYKEQGGEWE 269 Query: 292 ----------IKDVSKDGRSISVAPQSQTLFQAGVSVVS---WFMSAWGEQEGYPSHVTF 338 I DV S++ Q ++ + W A+ GYP+ V++ Sbjct: 270 YIHSGTGTSLIDDVIAPDLSVTPPIYDAVPSQVVGTLNASYKWAKYAFNSAGGYPAAVSY 329 Query: 339 HNNRLLFSGSKGDELSVYLSSFGAFYDFSLDGEYGCYDPTK---ALTTAVTDFSASTIHW 395 RL F+G+ +++++ G S P + + V A+ I Sbjct: 330 FEQRLCFAGTTNKPQNIWMTRSGTESAMSYS------LPVRDDDRIAFRVAARQANAIRH 383 Query: 396 MHPFGEGVLVGCDTSLWLLSISLSKGLS---IDFRRVSGSGVYACPPVSVGDCLVFVCGV 452 + P +L+ W+++ S ++ I R S G PV V + +FV Sbjct: 384 IVPLTS-LLLLTSGGEWVIASVNSDAVTPTTISVRPQSSVGSTDVQPVVVNNTTIFVQAR 442 Query: 453 GRRIKYISGSTE-QGFRFNEITQLADHLF-NQRILQLVYQEEPHSIVWVVLEPKDNSFPR 510 G ++ ++ + + G+ ++T A HLF N IL + + + P SIVW + S + Sbjct: 443 GGHVRDLAYNFQADGYVTTDLTLRAAHLFDNLDILDMCFAKAPQSIVWFI-----RSDGK 497 Query: 511 LLGCRFSAEGEGDFAWHTHMISDKHYVLSAASFPNDNRGGTSLWMLV 557 LLG + E + AWH H + + + N++R L+ +V Sbjct: 498 LLGLTYVPEQQ-VGAWHQHDTAGVFESCAVVAEGNEDR----LYAVV 539 >gnl|CDD|177535 PHA03131, PHA03131, dUTPase; Provisional. Length = 286 Score = 29.6 bits (67), Expect = 2.3 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 11/70 (15%) Query: 131 VFVHKDHPP----HHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKLSISQAD 186 VF+HKDH P L G +I F + + F P +++K D Sbjct: 217 VFMHKDHLPSFFNPLLSARCLGPRILFRWARVSFEDIPKD-------PCTSSKTLRQSED 269 Query: 187 TSTARITSDM 196 + Sbjct: 270 GDSDPSRGTK 279 >gnl|CDD|182627 PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional. Length = 378 Score = 29.2 bits (66), Expect = 3.1 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Query: 250 YSKGATYVKDNNITWITVLNLSSKTS---RESASG-AVAPYYVW 289 Y+ V N IT+LNL++ TS RE G A P +VW Sbjct: 115 YAPPGARVPTYNGQPITLLNLATHTSALPREQPGGAAHRPVFVW 158 >gnl|CDD|118860 pfam10339, Vel1p, Velum formation protein. This is a small family of putative velum formation proteins found in fungi. They are of unknown function but are highly induced in zinc-depleted conditions and have increased expression in NAP1 deletion mutants. Length = 201 Score = 28.4 bits (63), Expect = 4.7 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 434 VYACPPVSVGDCLV-FVCGVGRRIKYIS-GSTEQGFRFNEITQLADHLFN 481 + C P S+ D ++ F V I++ + T F IT LA+ LFN Sbjct: 100 IKTCNPQSIEDAMIPFANTVTGEIEFDAWADTADNASF--ITGLANQLFN 147 >gnl|CDD|162237 TIGR01175, pilM, type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. Length = 348 Score = 28.6 bits (64), Expect = 5.0 Identities = 11/36 (30%), Positives = 14/36 (38%) Query: 21 LQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQE 56 L L+ G AK + +PL Y P V E Sbjct: 227 LSRAYGLNPEEAGEAKQQGGLPLLYDPEVLRRFKGE 262 >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional. Length = 493 Score = 27.9 bits (62), Expect = 7.2 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%) Query: 123 YAVFGSTAVFVHKD------HPPHHLLYIQDGDKISFTFD 156 + GSTAV H D +PP +L Q+G I F+ Sbjct: 47 WQQLGSTAVLKHTDYGKLASNPP--ILLGQEGPIIDVAFN 84 >gnl|CDD|128464 smart00160, RanBD, Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase). Length = 130 Score = 27.7 bits (62), Expect = 8.7 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%) Query: 175 KSNAKLSISQADTST--ARITSDMKIFKPLDKGRSIRL 210 + AKL D R D+KI K D G +R+ Sbjct: 24 SARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRI 61 >gnl|CDD|182511 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional. Length = 902 Score = 27.7 bits (62), Expect = 9.3 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 4/26 (15%) Query: 302 ISVAPQSQTLFQAGVSVVSW----FM 323 +S FQ G+S VSW FM Sbjct: 275 VSEQDSEPNAFQQGISRVSWLLIRFM 300 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.420 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 9,385,097 Number of extensions: 593865 Number of successful extensions: 885 Number of sequences better than 10.0: 1 Number of HSP's gapped: 878 Number of HSP's successfully gapped: 10 Length of query: 578 Length of database: 5,994,473 Length adjustment: 99 Effective length of query: 479 Effective length of database: 3,855,281 Effective search space: 1846679599 Effective search space used: 1846679599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.1 bits)