RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
(578 letters)
>gnl|CDD|106970 PHA00661, PHA00661, hypothetical protein.
Length = 734
Score = 131 bits (331), Expect = 5e-31
Identities = 117/587 (19%), Positives = 211/587 (35%), Gaps = 81/587 (13%)
Query: 3 NTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDCRL 62
N + SF GE+SP L R D + + G+A RN I GP + + R +
Sbjct: 2 NVRVLQRSFGGGEISP-ELFGRIDDAKYQSGLAICRNFIVKPQGPAENRAGFRFVRAVKD 60
Query: 63 DPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLE 122
+ R+ F+ +L FG + + + TPY D ++
Sbjct: 61 SAKKVRLIPFTYSVTQTYVLEFGAGYFRFHTNGGTLLNGAVPY--EIATPYAEADLFNIH 118
Query: 123 YAVFGSTAVFVHKDHPPHHLL-YIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKLS 181
Y VH ++PP L ++ + F P+ + + V A
Sbjct: 119 YTQSADVLTLVHPNYPPRELRRLGAT----NWQLATVTFTSGPFEDINVDTPVSVTA--- 171
Query: 182 ISQADTSTARITSDMKIFKPLDKGRSIRL----GCHPPEWAKNTNYSIGAYIVADDKVYR 237
A+T +T+ +F G+ L P W +T + + + +Y
Sbjct: 172 --SANTGGTTLTASASVFALDAVGKLFYLEQPAVDSVPVWETSTESAPSSARRCTNNLYT 229
Query: 238 SLTTGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGD------ 291
+ G G T+ ++ S SG + Y V+ +
Sbjct: 230 NGGAGTIG--------------------TLRPSHTEGSAWDGSGGASRYNVYKEQGGEWE 269
Query: 292 ----------IKDVSKDGRSISVAPQSQTLFQAGVSVVS---WFMSAWGEQEGYPSHVTF 338
I DV S++ Q ++ + W A+ GYP+ V++
Sbjct: 270 YIHSGTGTSLIDDVIAPDLSVTPPIYDAVPSQVVGTLNASYKWAKYAFNSAGGYPAAVSY 329
Query: 339 HNNRLLFSGSKGDELSVYLSSFGAFYDFSLDGEYGCYDPTK---ALTTAVTDFSASTIHW 395
RL F+G+ +++++ G S P + + V A+ I
Sbjct: 330 FEQRLCFAGTTNKPQNIWMTRSGTESAMSYS------LPVRDDDRIAFRVAARQANAIRH 383
Query: 396 MHPFGEGVLVGCDTSLWLLSISLSKGLS---IDFRRVSGSGVYACPPVSVGDCLVFVCGV 452
+ P +L+ W+++ S ++ I R S G PV V + +FV
Sbjct: 384 IVPLTS-LLLLTSGGEWVIASVNSDAVTPTTISVRPQSSVGSTDVQPVVVNNTTIFVQAR 442
Query: 453 GRRIKYISGSTE-QGFRFNEITQLADHLF-NQRILQLVYQEEPHSIVWVVLEPKDNSFPR 510
G ++ ++ + + G+ ++T A HLF N IL + + + P SIVW + S +
Sbjct: 443 GGHVRDLAYNFQADGYVTTDLTLRAAHLFDNLDILDMCFAKAPQSIVWFI-----RSDGK 497
Query: 511 LLGCRFSAEGEGDFAWHTHMISDKHYVLSAASFPNDNRGGTSLWMLV 557
LLG + E + AWH H + + + N++R L+ +V
Sbjct: 498 LLGLTYVPEQQ-VGAWHQHDTAGVFESCAVVAEGNEDR----LYAVV 539
>gnl|CDD|177535 PHA03131, PHA03131, dUTPase; Provisional.
Length = 286
Score = 29.6 bits (67), Expect = 2.3
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 131 VFVHKDHPP----HHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKLSISQAD 186
VF+HKDH P L G +I F + + F P +++K D
Sbjct: 217 VFMHKDHLPSFFNPLLSARCLGPRILFRWARVSFEDIPKD-------PCTSSKTLRQSED 269
Query: 187 TSTARITSDM 196
+
Sbjct: 270 GDSDPSRGTK 279
>gnl|CDD|182627 PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional.
Length = 378
Score = 29.2 bits (66), Expect = 3.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 250 YSKGATYVKDNNITWITVLNLSSKTS---RESASG-AVAPYYVW 289
Y+ V N IT+LNL++ TS RE G A P +VW
Sbjct: 115 YAPPGARVPTYNGQPITLLNLATHTSALPREQPGGAAHRPVFVW 158
>gnl|CDD|118860 pfam10339, Vel1p, Velum formation protein. This is a small family
of putative velum formation proteins found in fungi.
They are of unknown function but are highly induced in
zinc-depleted conditions and have increased expression
in NAP1 deletion mutants.
Length = 201
Score = 28.4 bits (63), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 434 VYACPPVSVGDCLV-FVCGVGRRIKYIS-GSTEQGFRFNEITQLADHLFN 481
+ C P S+ D ++ F V I++ + T F IT LA+ LFN
Sbjct: 100 IKTCNPQSIEDAMIPFANTVTGEIEFDAWADTADNASF--ITGLANQLFN 147
>gnl|CDD|162237 TIGR01175, pilM, type IV pilus assembly protein PilM. This protein
is required for the assembly of the type IV fimbria in
Pseudomonas aeruginosa responsible for twitching
motility, and for a similar pilus-like structure in
Synechocystis. It is also found in species such as
Deinococcus described as having natural transformation
(for which a type IV pilus-like structure is proposed)
but not fimbria.
Length = 348
Score = 28.6 bits (64), Expect = 5.0
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 21 LQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQE 56
L L+ G AK + +PL Y P V E
Sbjct: 227 LSRAYGLNPEEAGEAKQQGGLPLLYDPEVLRRFKGE 262
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 27.9 bits (62), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 123 YAVFGSTAVFVHKD------HPPHHLLYIQDGDKISFTFD 156
+ GSTAV H D +PP +L Q+G I F+
Sbjct: 47 WQQLGSTAVLKHTDYGKLASNPP--ILLGQEGPIIDVAFN 84
>gnl|CDD|128464 smart00160, RanBD, Ran-binding domain. Domain of apporximately 150
residues that stabilises the GTP-bound form of Ran (the
Ras-like nuclear small GTPase).
Length = 130
Score = 27.7 bits (62), Expect = 8.7
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 175 KSNAKLSISQADTST--ARITSDMKIFKPLDKGRSIRL 210
+ AKL D R D+KI K D G +R+
Sbjct: 24 SARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRI 61
>gnl|CDD|182511 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 302 ISVAPQSQTLFQAGVSVVSW----FM 323
+S FQ G+S VSW FM
Sbjct: 275 VSEQDSEPNAFQQGISRVSWLLIRFM 300
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,385,097
Number of extensions: 593865
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 10
Length of query: 578
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 479
Effective length of database: 3,855,281
Effective search space: 1846679599
Effective search space used: 1846679599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)