RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] (578 letters) >2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (f:) Length = 266 Score = 32.4 bits (73), Expect = 0.14 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 22/147 (14%) Query: 47 PLVSMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSST------KW 100 L++ + + + V + + +KK Q+VV+ + Sbjct: 113 RLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLV---ENKKAQLVVIAHDVDPIELVVF 169 Query: 101 SPALFGKTYKTPYTF-KDNKSLEYAVFGSTAVFVHKDHPPHH----LLYIQDGDKISFT- 154 PAL + PY K L + V T V L + + + ++ Sbjct: 170 LPAL-CRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYND 228 Query: 155 -FDEIKFLPPPWLGDGMISGVKSNAKL 180 +DEI+ W G + G KS A++ Sbjct: 229 RYDEIRRH---W--GGNVLGPKSVARI 250 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:619-738) Length = 120 Score = 28.5 bits (64), Expect = 2.4 Identities = 4/30 (13%), Positives = 9/30 (30%) Query: 549 GGTSLWMLVALSAGEERSFTVRLNLLDDFK 578 T W + + + + + L K Sbjct: 27 KDTDDWYVGCTAGENGHTSKLVFDFLTPGK 56 >1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} (A:) Length = 155 Score = 28.0 bits (62), Expect = 3.2 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 9/41 (21%) Query: 132 FVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMIS 172 + KD P + +SF F+ + LGD +I Sbjct: 58 YRGKDKPT---------NVLSFPFEVPPGMEMSLLGDLVIC 89 >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} (A:139-237,A:278-337) Length = 159 Score = 28.0 bits (62), Expect = 3.7 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 11/103 (10%) Query: 472 ITQLADHLFNQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAW----- 526 +++ RI VYQ V+ E +D+ P LL F + + Sbjct: 32 ASEVRRITGFDRIK--VYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTI 89 Query: 527 -HTHMISDKHYVLSAASFPNDNRGGTSLWMLVALSAGEERSFT 568 +I D +A S LW +++ R + Sbjct: 90 NPVRIIPDIGMH-AAMSISIVRDNR--LWGMISCHNLTPRFVS 129 >2jk8_A BEPA, putative cell filamentation protein (BEPA protein); T4SS, OB fold, FIC domain, substrate protein, protein translocation; 2.8A {Bartonella henselae} PDB: 2vy3_A 2vza_A* (A:186-302) Length = 117 Score = 27.9 bits (62), Expect = 3.7 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 106 GKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDH-PPHHLLYIQDGDKISFT 154 G+TY Y + V G + + DH PP L ++ GDKI+FT Sbjct: 66 GETYTGTYRGAGLEGFALNVKG-AYIIGNIDHLPPEQLKILKPGDKITFT 114 >1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} (A:) Length = 97 Score = 26.6 bits (59), Expect = 8.5 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 64 PRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKW 100 P+ VF F P G + + G + R K+ Sbjct: 59 PKGIAVFHFRTPQ-GELVEIDGRALVARPEERIKKKF 94 >1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} (A:) Length = 114 Score = 26.5 bits (58), Expect = 9.6 Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 1/54 (1%) Query: 50 SMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPA 103 + D + + N F F I G + SPA Sbjct: 4 GSSGSLQTSDVVIHRKENEGFGFVI-ISSLNRPESGSTITVPHKIGRIIDGSPA 56 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} (A:120-228) Length = 109 Score = 26.4 bits (58), Expect = 9.8 Identities = 10/41 (24%), Positives = 14/41 (34%) Query: 129 TAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDG 169 + H P +++ KI F IK LGD Sbjct: 12 EVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDA 52 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.420 Gapped Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 4,476,670 Number of extensions: 201211 Number of successful extensions: 457 Number of sequences better than 10.0: 1 Number of HSP's gapped: 457 Number of HSP's successfully gapped: 11 Length of query: 578 Length of database: 4,956,049 Length adjustment: 93 Effective length of query: 485 Effective length of database: 1,812,184 Effective search space: 878909240 Effective search space used: 878909240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.3 bits)