RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
         (578 letters)



>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (f:)
          Length = 266

 Score = 32.4 bits (73), Expect = 0.14
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 47  PLVSMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSST------KW 100
            L++    +      +  +   V    +      +    +KK Q+VV+           +
Sbjct: 113 RLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLV---ENKKAQLVVIAHDVDPIELVVF 169

Query: 101 SPALFGKTYKTPYTF-KDNKSLEYAVFGSTAVFVHKDHPPHH----LLYIQDGDKISFT- 154
            PAL  +    PY   K    L + V   T   V            L  + +  + ++  
Sbjct: 170 LPAL-CRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYND 228

Query: 155 -FDEIKFLPPPWLGDGMISGVKSNAKL 180
            +DEI+     W   G + G KS A++
Sbjct: 229 RYDEIRRH---W--GGNVLGPKSVARI 250


>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM
           barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
           PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:619-738)
          Length = 120

 Score = 28.5 bits (64), Expect = 2.4
 Identities = 4/30 (13%), Positives = 9/30 (30%)

Query: 549 GGTSLWMLVALSAGEERSFTVRLNLLDDFK 578
             T  W +   +     +  +  + L   K
Sbjct: 27  KDTDDWYVGCTAGENGHTSKLVFDFLTPGK 56


>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics,
           protein structure initiative, nysgxrc target T842, PFAM
           family UPF0054, PSI; 2.70A {Escherichia coli} (A:)
          Length = 155

 Score = 28.0 bits (62), Expect = 3.2
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 9/41 (21%)

Query: 132 FVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMIS 172
           +  KD P          + +SF F+    +    LGD +I 
Sbjct: 58  YRGKDKPT---------NVLSFPFEVPPGMEMSLLGDLVIC 89


>2ool_A Sensor protein; bacteriophytochrome, photoconversion,
           photoreceptor, biliverdin, signaling protein; HET: LBV;
           2.20A {Rhodopseudomonas palustris CGA009}
           (A:139-237,A:278-337)
          Length = 159

 Score = 28.0 bits (62), Expect = 3.7
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 472 ITQLADHLFNQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAW----- 526
            +++       RI   VYQ        V+ E +D+  P LL   F +      +      
Sbjct: 32  ASEVRRITGFDRIK--VYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTI 89

Query: 527 -HTHMISDKHYVLSAASFPNDNRGGTSLWMLVALSAGEERSFT 568
               +I D     +A S          LW +++      R  +
Sbjct: 90  NPVRIIPDIGMH-AAMSISIVRDNR--LWGMISCHNLTPRFVS 129


>2jk8_A BEPA, putative cell filamentation protein (BEPA protein);
           T4SS, OB fold, FIC domain, substrate protein, protein
           translocation; 2.8A {Bartonella henselae} PDB: 2vy3_A
           2vza_A* (A:186-302)
          Length = 117

 Score = 27.9 bits (62), Expect = 3.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 106 GKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDH-PPHHLLYIQDGDKISFT 154
           G+TY   Y     +     V G   +  + DH PP  L  ++ GDKI+FT
Sbjct: 66  GETYTGTYRGAGLEGFALNVKG-AYIIGNIDHLPPEQLKILKPGDKITFT 114


>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein
           subunit, hydrolase; NMR
           {Methanothermobacterthermautotrophicus} (A:)
          Length = 97

 Score = 26.6 bits (59), Expect = 8.5
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 64  PRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKW 100
           P+   VF F  P  G  + + G   +     R   K+
Sbjct: 59  PKGIAVFHFRTPQ-GELVEIDGRALVARPEERIKKKF 94


>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
           atrophin-1 interacting protein 1, PDZ domain, structural
           genomics; NMR {Homo sapiens} (A:)
          Length = 114

 Score = 26.5 bits (58), Expect = 9.6
 Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 1/54 (1%)

Query: 50  SMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPA 103
                 +  D  +  + N  F F I          G        +      SPA
Sbjct: 4   GSSGSLQTSDVVIHRKENEGFGFVI-ISSLNRPESGSTITVPHKIGRIIDGSPA 56


>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase
           inhibitor, succinic acid inhibitor, hydrolase; HET: BDS;
           1.80A {Pseudomonas aeruginosa} (A:120-228)
          Length = 109

 Score = 26.4 bits (58), Expect = 9.8
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 129 TAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDG 169
              +    H P +++      KI F    IK      LGD 
Sbjct: 12  EVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDA 52


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,476,670
Number of extensions: 201211
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 11
Length of query: 578
Length of database: 4,956,049
Length adjustment: 93
Effective length of query: 485
Effective length of database: 1,812,184
Effective search space: 878909240
Effective search space used: 878909240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)