BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] (578 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Length = 578 Score = 1194 bits (3088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 578/578 (100%), Positives = 578/578 (100%) Query: 1 MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC 60 MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC Sbjct: 1 MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC 60 Query: 61 RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS 120 RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS Sbjct: 61 RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS 120 Query: 121 LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL 180 LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL Sbjct: 121 LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL 180 Query: 181 SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT 240 SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT Sbjct: 181 SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT 240 Query: 241 TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR 300 TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR Sbjct: 241 TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR 300 Query: 301 SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF 360 SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF Sbjct: 301 SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF 360 Query: 361 GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK 420 GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK Sbjct: 361 GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK 420 Query: 421 GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF 480 GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF Sbjct: 421 GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF 480 Query: 481 NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA 540 NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA Sbjct: 481 NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA 540 Query: 541 ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK 578 ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK Sbjct: 541 ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK 578 >gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 27.7 bits (60), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Query: 396 MHPFGEGVLVGCDTSLWLLSISLSKGLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRR 455 + P G L D + + L L L+++F R + A P S+ D VFV + R Sbjct: 187 IRPSARGELEITDVNSYYLDKGL---LAVEFLREGSAWFDAGTPESLLDTAVFVRNIENR 243 Query: 456 IK-YISGSTEQGFRFNEIT-----QLADHLFN 481 + Y++ E +R + I QL DH N Sbjct: 244 LGLYVACPEEIAYRHDFINESQFFQLIDHFGN 275 >gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 28/107 (26%) Query: 265 ITVLNLSSKTSRE---SASGAVAPYYVWGDIKD---------VSKDGR-----SISVAPQ 307 +++++L TSR+ A Y+ GD+K+ VS D SI A Q Sbjct: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297 Query: 308 SQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELS 354 ++ + Q + V+ W+ + WG +NR+L + S LS Sbjct: 298 TKVVSQNLLRVLVWYDNEWG-----------FSNRMLDTASAMANLS 333 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 92 VVVRSSTKWSPALFGKTYKTPYTFKDNKSL 121 ++V S K + GKT +T F+DN+ L Sbjct: 139 IMVNGSNKVFIEVNGKTVETGINFRDNEQL 168 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 382,883 Number of Sequences: 1233 Number of extensions: 16163 Number of successful extensions: 29 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 6 length of query: 578 length of database: 328,796 effective HSP length: 79 effective length of query: 499 effective length of database: 231,389 effective search space: 115463111 effective search space used: 115463111 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)