BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
         (578 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 578

 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/578 (100%), Positives = 578/578 (100%)

Query: 1   MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC 60
           MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC
Sbjct: 1   MVNTTWTKHSFSAGELSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDC 60

Query: 61  RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS 120
           RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS
Sbjct: 61  RLDPRSNRVFSFSIPDGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKS 120

Query: 121 LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL 180
           LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL
Sbjct: 121 LEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISGVKSNAKL 180

Query: 181 SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT 240
           SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT
Sbjct: 181 SISQADTSTARITSDMKIFKPLDKGRSIRLGCHPPEWAKNTNYSIGAYIVADDKVYRSLT 240

Query: 241 TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR 300
           TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR
Sbjct: 241 TGRSGDRFGYSKGATYVKDNNITWITVLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGR 300

Query: 301 SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF 360
           SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF
Sbjct: 301 SISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELSVYLSSF 360

Query: 361 GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK 420
           GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK
Sbjct: 361 GAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSK 420

Query: 421 GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF 480
           GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF
Sbjct: 421 GLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRRIKYISGSTEQGFRFNEITQLADHLF 480

Query: 481 NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA 540
           NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA
Sbjct: 481 NQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAEGEGDFAWHTHMISDKHYVLSA 540

Query: 541 ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK 578
           ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK
Sbjct: 541 ASFPNDNRGGTSLWMLVALSAGEERSFTVRLNLLDDFK 578


>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 292

 Score = 27.7 bits (60), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 396 MHPFGEGVLVGCDTSLWLLSISLSKGLSIDFRRVSGSGVYACPPVSVGDCLVFVCGVGRR 455
           + P   G L   D + + L   L   L+++F R   +   A  P S+ D  VFV  +  R
Sbjct: 187 IRPSARGELEITDVNSYYLDKGL---LAVEFLREGSAWFDAGTPESLLDTAVFVRNIENR 243

Query: 456 IK-YISGSTEQGFRFNEIT-----QLADHLFN 481
           +  Y++   E  +R + I      QL DH  N
Sbjct: 244 LGLYVACPEEIAYRHDFINESQFFQLIDHFGN 275


>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 333

 Score = 25.0 bits (53), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 28/107 (26%)

Query: 265 ITVLNLSSKTSRE---SASGAVAPYYVWGDIKD---------VSKDGR-----SISVAPQ 307
           +++++L   TSR+       A   Y+  GD+K+         VS D       SI  A Q
Sbjct: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297

Query: 308 SQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELS 354
           ++ + Q  + V+ W+ + WG            +NR+L + S    LS
Sbjct: 298 TKVVSQNLLRVLVWYDNEWG-----------FSNRMLDTASAMANLS 333


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 25.0 bits (53), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 92  VVVRSSTKWSPALFGKTYKTPYTFKDNKSL 121
           ++V  S K    + GKT +T   F+DN+ L
Sbjct: 139 IMVNGSNKVFIEVNGKTVETGINFRDNEQL 168


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,883
Number of Sequences: 1233
Number of extensions: 16163
Number of successful extensions: 29
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 6
length of query: 578
length of database: 328,796
effective HSP length: 79
effective length of query: 499
effective length of database: 231,389
effective search space: 115463111
effective search space used: 115463111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)