RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781209|ref|YP_003065622.1| hypothetical protein
CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 31/123 (25%)

Query: 57  DLLPLYFTYNGELKYYIPL--KCLKVLNTSEETQ----LRGRCIVA--RGDTPRPLSLKY 108
           +L  LY TY+  +   I    + L  L  +         +G  I+      +  P    Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDY 230

Query: 109 IGEVPLSDCDPL--------YQEAFALKLAGELCPPLIMDDQMRSYLK---GESER-VLA 156
           +  +P+S C PL        Y      KL G   P      ++RSYLK   G S+  V A
Sbjct: 231 LLSIPIS-C-PLIGVIQLAHY--VVTAKLLG-FTPG-----ELRSYLKGATGHSQGLVTA 280

Query: 157 VAM 159
           VA+
Sbjct: 281 VAI 283



 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 40/248 (16%), Positives = 57/248 (22%), Gaps = 134/248 (54%)

Query: 29  ADY---CRLL-LPPIHKGLLRSF---------------------SW-SFATQSMDLLPLY 62
           A Y    +LL   P   G LRS+                     SW SF       + + 
Sbjct: 247 AHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303

Query: 63  FTYNGELKYYIPLKCL----------KVLNTSEETQLRGRCIVARG-DTPRP-LSL---- 106
           F        +I ++C            +L  S E               P P LS+    
Sbjct: 304 F--------FIGVRCYEAYPNTSLPPSILEDSLE----------NNEGVPSPMLSISNLT 345

Query: 107 -----KYIGEV--------------------------PLSDCDPLYQEAFALKLAGELCP 135
                 Y+ +                           P S    LY     L L     P
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----LY--GLNLTLRKAKAP 399

Query: 136 PLIMDDQMR-----------------------SYLKGESERVLAVAMDM--DGVEI-PED 169
             +  DQ R                         L   S+ +     D+  + V    +D
Sbjct: 400 SGL--DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK---DLVKNNVSFNAKD 454

Query: 170 RG---YHN 174
                Y  
Sbjct: 455 IQIPVYDT 462



 Score = 34.1 bits (78), Expect = 0.015
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 27/126 (21%)

Query: 44  LRSFSWSFAT--QSMDLLP--LYFTYNGELKYYIPLKCLKVLNTSEETQLRGRCIVARGD 99
            R  + S  +    + L+P   +F  + +L+     +  K+L    E         A  D
Sbjct: 6   TRPLTLSHGSLEHVL-LVPTASFFIAS-QLQE----QFNKILPEPTEG-------FAADD 52

Query: 100 TPR-PLSL--KYIGEVPLSDCDPLYQEAFALKLAGELCPPLIMDDQMRSYLKGESERVLA 156
            P  P  L  K++G V  S  +P     F   L       L + +    YL+G     LA
Sbjct: 53  EPTTPAELVGKFLGYV-SSLVEPSKVGQFDQVLN------LCLTEFENCYLEGNDIHALA 105

Query: 157 VAMDMD 162
             +  +
Sbjct: 106 AKLLQE 111



 Score = 32.6 bits (74), Expect = 0.052
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 36/98 (36%)

Query: 102 RPLSLKYIGE------VP---LSDCDPLYQEAFALKLAGELCPPLIMDDQMRS------- 145
           RPL+L + G       VP         L QE F   L  E       DD+  +       
Sbjct: 7   RPLTLSH-GSLEHVLLVPTASFFIASQL-QEQFNKILP-EPTEGFAADDEPTTPAELVGK 63

Query: 146 YL-----------KGESERVLAVAMD------MDGVEI 166
           +L            G+ ++VL + +       ++G +I
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101



 Score = 30.3 bits (68), Expect = 0.25
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 23/62 (37%)

Query: 24  ERSLKADYCRLLLP---PIHKGLL-------------RSFSWSFATQSMDL-LPLYFTYN 66
           ER LK    R L P   P H  LL              + S++    + D+ +P+Y T++
Sbjct: 411 ERKLKFSN-RFL-PVASPFHSHLLVPASDLINKDLVKNNVSFN----AKDIQIPVYDTFD 464

Query: 67  GE 68
           G 
Sbjct: 465 GS 466


>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
           SCOP: b.34.10.1
          Length = 92

 Score = 27.1 bits (60), Expect = 2.0
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 92  RCIVARGDTPRPLSLKYIGEVP 113
           R  +  G+T    ++ +   +P
Sbjct: 15  RVSLKVGETIESGTVIFCDVLP 36


>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase,
           autoproteolysis; HET: CME; 1.65A {Escherichia coli}
           SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
          Length = 177

 Score = 26.8 bits (59), Expect = 2.7
 Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 4/52 (7%)

Query: 123 EAFALKLAGELCPP--LIMDDQMRSYLKGESERVLAVAMDMDGVEIPEDRGY 172
           E FA     E   P       +    L    E   A  +D  G  + E +  
Sbjct: 127 ENFAFARGMERVSPEIFSTSLRYEQLLAARKEG--ATVLDHSGAPLDEKQKM 176


>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
           glycosyltransferase, transferase; HET: NDG; 1.85A
           {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
           2zuw_A*
          Length = 759

 Score = 25.5 bits (56), Expect = 6.2
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 43  LLRSFSWSFATQSMDLLPLYFT--YNGELKYYIPLKCLKVLNTSEETQ 88
           L R   +  A+ + D    + +     E+ ++       V+N +++ Q
Sbjct: 680 LERVLFY--ASHNEDKYAAWSSSNPECEVAHFPEQGLYCVINNTDQPQ 725


>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
          glycoprotein, laminin EGF-like domain, extracellular
          matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
          musculus}
          Length = 608

 Score = 25.6 bits (55), Expect = 6.7
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 33 RLLLPPIHKGLLRSFSWSFATQSMDLLPLYFTYNGELKYYIPL 75
          R   P I KG   +      T   D L L++  + +   ++ +
Sbjct: 21 RTYRPEIKKGSYNNIVVHVKTAVADNL-LFYLGSAKFIDFLAI 62


>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
           rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
           HTA426}
          Length = 509

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 73  IPLKCLKVLNTSEETQLRGRCIVARGDTPRPLSLKYIGEVPLSDCDP 119
           IP    +V  T+ + Q      V +G+ P     K +G   L+   P
Sbjct: 387 IPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPP 433


>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel,
           hydrolase; 1.84A {Bacillus SP}
          Length = 610

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 23  NERSLKADYCRLLLPPIHKGLLRSFSWSFATQSMDLLPLYF 63
            +   K  YC  + P I+K     F      Q+  ++PL  
Sbjct: 505 KQGVEKELYCLFIAPEINKNTFEEFMKYNIVQNTRIIPLSL 545


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 25.3 bits (54), Expect = 8.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 15  GQRPLENWNER 25
            ++ LE WN+R
Sbjct: 116 AKKDLEEWNQR 126


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,540,072
Number of extensions: 65480
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 12
Length of query: 175
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 89
Effective length of database: 3,608,246
Effective search space: 321133894
Effective search space used: 321133894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)