RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781209|ref|YP_003065622.1| hypothetical protein
CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 27.1 bits (60), Expect = 0.95
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 92  RCIVARGDTPRPLSLKYIGEVP 113
           R  +  G+T    ++ +   +P
Sbjct: 15  RVSLKVGETIESGTVIFCDVLP 36


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
          Length = 118

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 72  YIPLKCLKVLNTSEETQLRGRCIVARGDTPRPLSLKYIGEVPLSDCDP 119
            IP K  +V +T+E+ Q      V +G+  R    K +G+  L   +P
Sbjct: 29  TIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINP 76


>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 206

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 157 VAMDMDGVEIPE 168
             +D++GV +PE
Sbjct: 5   ACLDLEGVLVPE 16


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,929
Number of extensions: 28907
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)