HHsearch alignment for GI: 254781210 and conserved domain: PHA00201

>PHA00201 major capsid protein.
Probab=100.00  E-value=0  Score=417.51  Aligned_cols=309  Identities=15%  Similarity=0.115  Sum_probs=251.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCCCCCEEEEEECCCC-CH
Q ss_conf             279998867789999987112430100230312674068713462355332589874324-5687626999823443-11
Q gi|254781210|r    8 ATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIY-NATDQDRRWVGHSQFG-WA   85 (343)
Q Consensus         8 ~~aFv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~-~~~~~~~~~v~~~~~~-~a   85 (343)
T Consensus        24 ~AlfLK~fsgEvltaF~~~-~i~~~~~~~Rti~~GKSaqFp~tG~~~a~YhtpG~~i~~~~~~~~~~Ek~I~iDdlLis~  102 (343)
T PHA00201         24 LALFLKVFGGEVLTAFART-SVTMNRHMVRSIQSGKSAQFPVLGRTKAAYLAPGENLDDKRKDIKHTEKVITIDGLLTAD  102 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHH
T ss_conf             7789998408999999886-413044368743798245301430440362379887678988876541699964044467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCEEEECCCCC------CCCCC
Q ss_conf             221268888741006899999999998776889999986201455666665445-66664023023577------64222
Q gi|254781210|r   86 ERIDPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEF-FSKENILSAVEGDD------FFKTF  158 (343)
Q Consensus        86 ~~IddiDe~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~-~~~~~~~~~~~~~~------~~~lt  158 (343)
T Consensus       103 ~fi~~~de~~~hydvR~~ys~~~G~aLa~~~D~~i~r~ia~~a~~a~~~~~~~~g~~~~~~i~~g~~~~~~~~~~~g~al  182 (343)
T PHA00201        103 VLIYDIEDAMNHYDVRSEYTAQLGESLAMAADGAVLAEMAGLCNLPDASNENIAGLGKATVLEVGAKADLTDPVKLGKAI  182 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             88883999985015779999999999999999999999998751456666667788887389724655545402448999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             89999999986023889754607997699999875067101000001343113670122743589970777876666544
Q gi|254781210|r  159 IGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAG  238 (343)
Q Consensus       159 ~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~  238 (343)
T Consensus       183 v~aif~Aa~~lDEk~VP~~g--R~~Vl~P~qYY~Li~a~~~n~~n~~g~~~~~~G~i~~VaGi~iv~~~~l~~~~ag~~~  260 (343)
T PHA00201        183 IAQLTIARAKLTKNYVPAAD--RVFYTTPDNYSAILAALMPNAANYAALIDPETGSIRNVMGFEVVEVPHLTAGGAGDTR  260 (343)
T ss_pred             HHHHHHHHHHHHHCCCCCCC--CEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf             99999999986424899778--3899888999999975401345533444757771102301688743761346677677


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEECC
Q ss_conf             43333345655667776666666654556551379998454103445135315655416532033000100026356541
Q gi|254781210|r  239 TKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIEP  318 (343)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~  318 (343)
T Consensus       261 ~~-------a~tg~~~~~~~~~~gd~~~~~snt~GLifhk~AvGtVKLmDl~vEsd~~v-~yQGdLmVaKyAMGhG~LRP  332 (343)
T PHA00201        261 ED-------APTGQKHAFPATASGDVKVALDNVVGLFQHRSAVGTVKLKDLALERARRA-NFQADQIIAKYAMGHGGLRP  332 (343)
T ss_pred             CC-------CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEE-EEEHHHHHHHHHCCCCCCCH
T ss_conf             67-------77787776665557753244452479997311258998504310012565-64248999998725787897


Q ss_pred             CCEEEEEEC
Q ss_conf             525899954
Q gi|254781210|r  319 DKILGIEIS  327 (343)
Q Consensus       319 ~~vv~I~~~  327 (343)
T Consensus       333 eaA~alv~~  341 (343)
T PHA00201        333 EAAGALVFK  341 (343)
T ss_pred             HHHHHEECC
T ss_conf             774320045