HHsearch alignment for GI: 254781210 and conserved domain: PHA00201
>PHA00201 major capsid protein.
Probab=100.00 E-value=0 Score=417.51 Aligned_cols=309 Identities=15% Similarity=0.115 Sum_probs=251.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCCCCCEEEEEECCCC-CH
Q ss_conf 279998867789999987112430100230312674068713462355332589874324-5687626999823443-11
Q gi|254781210|r 8 ATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIY-NATDQDRRWVGHSQFG-WA 85 (343)
Q Consensus 8 ~~aFv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~-~~~~~~~~~v~~~~~~-~a 85 (343)
T Consensus 24 ~AlfLK~fsgEvltaF~~~-~i~~~~~~~Rti~~GKSaqFp~tG~~~a~YhtpG~~i~~~~~~~~~~Ek~I~iDdlLis~ 102 (343)
T PHA00201 24 LALFLKVFGGEVLTAFART-SVTMNRHMVRSIQSGKSAQFPVLGRTKAAYLAPGENLDDKRKDIKHTEKVITIDGLLTAD 102 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHH
T ss_conf 7789998408999999886-413044368743798245301430440362379887678988876541699964044467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCEEEECCCCC------CCCCC
Q ss_conf 221268888741006899999999998776889999986201455666665445-66664023023577------64222
Q gi|254781210|r 86 ERIDPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEF-FSKENILSAVEGDD------FFKTF 158 (343)
Q Consensus 86 ~~IddiDe~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~-~~~~~~~~~~~~~~------~~~lt 158 (343)
T Consensus 103 ~fi~~~de~~~hydvR~~ys~~~G~aLa~~~D~~i~r~ia~~a~~a~~~~~~~~g~~~~~~i~~g~~~~~~~~~~~g~al 182 (343)
T PHA00201 103 VLIYDIEDAMNHYDVRSEYTAQLGESLAMAADGAVLAEMAGLCNLPDASNENIAGLGKATVLEVGAKADLTDPVKLGKAI 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 88883999985015779999999999999999999999998751456666667788887389724655545402448999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 89999999986023889754607997699999875067101000001343113670122743589970777876666544
Q gi|254781210|r 159 IGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAG 238 (343)
Q Consensus 159 ~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~ 238 (343)
T Consensus 183 v~aif~Aa~~lDEk~VP~~g--R~~Vl~P~qYY~Li~a~~~n~~n~~g~~~~~~G~i~~VaGi~iv~~~~l~~~~ag~~~ 260 (343)
T PHA00201 183 IAQLTIARAKLTKNYVPAAD--RVFYTTPDNYSAILAALMPNAANYAALIDPETGSIRNVMGFEVVEVPHLTAGGAGDTR 260 (343)
T ss_pred HHHHHHHHHHHHHCCCCCCC--CEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 99999999986424899778--3899888999999975401345533444757771102301688743761346677677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEECC
Q ss_conf 43333345655667776666666654556551379998454103445135315655416532033000100026356541
Q gi|254781210|r 239 TKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIEP 318 (343)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~ 318 (343)
T Consensus 261 ~~-------a~tg~~~~~~~~~~gd~~~~~snt~GLifhk~AvGtVKLmDl~vEsd~~v-~yQGdLmVaKyAMGhG~LRP 332 (343)
T PHA00201 261 ED-------APTGQKHAFPATASGDVKVALDNVVGLFQHRSAVGTVKLKDLALERARRA-NFQADQIIAKYAMGHGGLRP 332 (343)
T ss_pred CC-------CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEE-EEEHHHHHHHHHCCCCCCCH
T ss_conf 67-------77787776665557753244452479997311258998504310012565-64248999998725787897
Q ss_pred CCEEEEEEC
Q ss_conf 525899954
Q gi|254781210|r 319 DKILGIEIS 327 (343)
Q Consensus 319 ~~vv~I~~~ 327 (343)
T Consensus 333 eaA~alv~~ 341 (343)
T PHA00201 333 EAAGALVFK 341 (343)
T ss_pred HHHHHEECC
T ss_conf 774320045