HHsearch alignment for GI: 254781210 and conserved domain: PHA02004
>PHA02004 capsid protein.
Probab=99.92 E-value=8.4e-23 Score=147.76 Aligned_cols=294 Identities=12% Similarity=0.106 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHH-HHH
Q ss_conf 9988677899999871124301002303126740687134623553325898743245687626999823443112-212
Q gi|254781210|r 11 NIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAE-RID 89 (343)
Q Consensus 11 Fv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~-~Id 89 (343)
T Consensus 22 HiEey~g~Vd~~~~~~-s~f~~~~~vR~v~GTNtvr~drlG~sel~gr~~Ges~d~T~-~~~DK~~L~VDT~lyaR~~vd 99 (330)
T PHA02004 22 HLEEHLGIVDKHFAYT-SKFAPLMNIRDLRGSNVVRLDRLGNVEAKGRRAGEELERSR-VVNDKWNLTVDTLLYLRHQFD 99 (330)
T ss_pred EHHHHCCHHHHHHHHH-HHHHCCCEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCC-CCCCCEEEEEEEEEEECCCCC
T ss_conf 2788547055432377-77622440332036515661000637760315888877774-433616899864665215443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCEEE----ECCCCCCCCCCHHHHHH
Q ss_conf 68888741006899999999998776889999-98620145566666544566664023----02357764222899999
Q gi|254781210|r 90 PFATLDSGINPLLPYASLATAAMHRKQDEAIL-KGMLGVNKKGKIGAETEFFSKENILS----AVEGDDFFKTFIGQLIT 164 (343)
Q Consensus 90 diDe~k~~~d~rs~y~~~~g~ALar~~D~~I~-~a~~g~a~~~~~g~~~~~~~~~~~~~----~~~~~~~~~lt~akl~~ 164 (343)
T Consensus 100 ~~dDwq~~~D~r~ela~n~g~~lak~~DQa~liQlik~~~~~apa~-l~~~f~~G~~~~~~~~g~~~e~~a~~l~~a~~~ 178 (330)
T PHA02004 100 HQDEWTQSFDMRKEVAELDGQELARKFDQACLIQVIKAAAMDAPVD-LEDAFSPGVLEKLDLTGLTAKQAADKIVRMHRR 178 (330)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 0320458603778987887999999888999999997514468011-677777871567887312355330689999999
Q ss_pred HHHHHHHCCCCC--CCCEEEEECCHHHHHHHHCCCCEEEHHCCCC---CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 999860238897--5460799769999987506710100000134---31136701227435899707778766665444
Q gi|254781210|r 165 AKSIFRKRYIDV--DSEQVYVLIPSDVWASLFALERATSKDYINT---AALQAGKIEAFAGVWFINMEKVPGNDLFPAGT 239 (343)
Q Consensus 165 a~~~ld~~~Vp~--~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~---~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~ 239 (343)
T Consensus 179 ~ve~~~~rdv~d~v~~-e~v~l~~P~~Fs~LlehdrLvd~ey~~s~~~~~~~~~rv~~~ngvpVvesnrfPt~ait--~H 255 (330)
T PHA02004 179 VVETFIDRDLGDAVYS-EGLTPMSPRVFSLLLEHDKLMNVEYQATGATNDYVKSRVAILNGVKVLETPRFATKAIA--AH 255 (330)
T ss_pred HHHHHHHCCCCCCCCC-CCEEEECHHHHHHHHHCCHHCCEEEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCCC--CC
T ss_conf 9999986014653332-55187378999999844301144545236765312328999827068846888865413--56
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEECCC
Q ss_conf 33333456556677766666666545565513799984541034451353156554165320330001000263565415
Q gi|254781210|r 240 KFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIEPD 319 (343)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~~ 319 (343)
T Consensus 256 ~L----------------g~~~Nvt~~e~~~~~a~f~~s~aLl~~e~~pvt~diw~dkk-e~~~~iDtf~s~~v~~rrpd 318 (330)
T PHA02004 256 PL----------------GRHFNVSAEESERQIALFLPSKTLITAQVAPVQAKLWEDNE-KFSWVLDTFQMYNIGARRPD 318 (330)
T ss_pred CC----------------CCCCCCCHHHHCCEEEEEECCCEEEEEEEEECCCCCCCCCC-HHEEEEEHHHHCCCCCCCCC
T ss_conf 33----------------45568655664032789855741578875523410012431-10356432655387778856
Q ss_pred CEEEEEEC
Q ss_conf 25899954
Q gi|254781210|r 320 KILGIEIS 327 (343)
Q Consensus 320 ~vv~I~~~ 327 (343)
T Consensus 319 ~a~~~~~~ 326 (330)
T PHA02004 319 TAGAIELK 326 (330)
T ss_pred CEEEEEEE
T ss_conf 21047861