HHsearch alignment for GI: 254781210 and conserved domain: PHA02004

>PHA02004 capsid protein.
Probab=99.92  E-value=8.4e-23  Score=147.76  Aligned_cols=294  Identities=12%  Similarity=0.106  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHH-HHH
Q ss_conf             9988677899999871124301002303126740687134623553325898743245687626999823443112-212
Q gi|254781210|r   11 NIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAE-RID   89 (343)
Q Consensus        11 Fv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~-~Id   89 (343)
T Consensus        22 HiEey~g~Vd~~~~~~-s~f~~~~~vR~v~GTNtvr~drlG~sel~gr~~Ges~d~T~-~~~DK~~L~VDT~lyaR~~vd   99 (330)
T PHA02004         22 HLEEHLGIVDKHFAYT-SKFAPLMNIRDLRGSNVVRLDRLGNVEAKGRRAGEELERSR-VVNDKWNLTVDTLLYLRHQFD   99 (330)
T ss_pred             EHHHHCCHHHHHHHHH-HHHHCCCEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCC-CCCCCEEEEEEEEEEECCCCC
T ss_conf             2788547055432377-77622440332036515661000637760315888877774-433616899864665215443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCEEE----ECCCCCCCCCCHHHHHH
Q ss_conf             68888741006899999999998776889999-98620145566666544566664023----02357764222899999
Q gi|254781210|r   90 PFATLDSGINPLLPYASLATAAMHRKQDEAIL-KGMLGVNKKGKIGAETEFFSKENILS----AVEGDDFFKTFIGQLIT  164 (343)
Q Consensus        90 diDe~k~~~d~rs~y~~~~g~ALar~~D~~I~-~a~~g~a~~~~~g~~~~~~~~~~~~~----~~~~~~~~~lt~akl~~  164 (343)
T Consensus       100 ~~dDwq~~~D~r~ela~n~g~~lak~~DQa~liQlik~~~~~apa~-l~~~f~~G~~~~~~~~g~~~e~~a~~l~~a~~~  178 (330)
T PHA02004        100 HQDEWTQSFDMRKEVAELDGQELARKFDQACLIQVIKAAAMDAPVD-LEDAFSPGVLEKLDLTGLTAKQAADKIVRMHRR  178 (330)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             0320458603778987887999999888999999997514468011-677777871567887312355330689999999


Q ss_pred             HHHHHHHCCCCC--CCCEEEEECCHHHHHHHHCCCCEEEHHCCCC---CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             999860238897--5460799769999987506710100000134---31136701227435899707778766665444
Q gi|254781210|r  165 AKSIFRKRYIDV--DSEQVYVLIPSDVWASLFALERATSKDYINT---AALQAGKIEAFAGVWFINMEKVPGNDLFPAGT  239 (343)
Q Consensus       165 a~~~ld~~~Vp~--~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~---~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~  239 (343)
T Consensus       179 ~ve~~~~rdv~d~v~~-e~v~l~~P~~Fs~LlehdrLvd~ey~~s~~~~~~~~~rv~~~ngvpVvesnrfPt~ait--~H  255 (330)
T PHA02004        179 VVETFIDRDLGDAVYS-EGLTPMSPRVFSLLLEHDKLMNVEYQATGATNDYVKSRVAILNGVKVLETPRFATKAIA--AH  255 (330)
T ss_pred             HHHHHHHCCCCCCCCC-CCEEEECHHHHHHHHHCCHHCCEEEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCCC--CC
T ss_conf             9999986014653332-55187378999999844301144545236765312328999827068846888865413--56


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEECCC
Q ss_conf             33333456556677766666666545565513799984541034451353156554165320330001000263565415
Q gi|254781210|r  240 KFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIEPD  319 (343)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~~  319 (343)
T Consensus       256 ~L----------------g~~~Nvt~~e~~~~~a~f~~s~aLl~~e~~pvt~diw~dkk-e~~~~iDtf~s~~v~~rrpd  318 (330)
T PHA02004        256 PL----------------GRHFNVSAEESERQIALFLPSKTLITAQVAPVQAKLWEDNE-KFSWVLDTFQMYNIGARRPD  318 (330)
T ss_pred             CC----------------CCCCCCCHHHHCCEEEEEECCCEEEEEEEEECCCCCCCCCC-HHEEEEEHHHHCCCCCCCCC
T ss_conf             33----------------45568655664032789855741578875523410012431-10356432655387778856


Q ss_pred             CEEEEEEC
Q ss_conf             25899954
Q gi|254781210|r  320 KILGIEIS  327 (343)
Q Consensus       320 ~vv~I~~~  327 (343)
T Consensus       319 ~a~~~~~~  326 (330)
T PHA02004        319 TAGAIELK  326 (330)
T ss_pred             CEEEEEEE
T ss_conf             21047861