HHsearch alignment for GI: 254781210 and conserved domain: pfam05065
>pfam05065 Phage_capsid Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.
Probab=99.26 E-value=5.8e-09 Score=69.55 Aligned_cols=259 Identities=18% Similarity=0.130 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCE--EEEECCCC-EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 88677899999871124301002303126740--68713462-3553325898743245687626999823443112212
Q gi|254781210|r 13 YEFKKHVELALQETKSKLRPTVTEQATEGEAS--ALVEVFKP-TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERID 89 (343)
Q Consensus 13 ~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks--~~f~~~G~-~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~Id 89 (343)
T Consensus 7 ~~~~~~ii~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~v~E~-~~~~~~~~~-~f~~i~l~~~k~~~~~~ 83 (278)
T pfam05065 7 EEISTEIIELLRE-KSPLRQLATVVPVTTGESGSLTIPKRTGGATAGWVGEG-AAAPETDTP-TFGEVTLPVKKLAALVP 83 (278)
T ss_pred HHHHHHHHHHHHH-HHHHHHHCEEEECCCCCCCCEEEEEECCCCCEEEECCC-CCCCCCCCC-CEEEEEEEEEEEEEEEE
T ss_conf 9999999999986-53586624799815898786688877376416885468-867766777-33588871089999961
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--C-EEEECCCCCCCCCCHHHHHH
Q ss_conf 688--887410068999999999987768899999862014556666654456666--4-02302357764222899999
Q gi|254781210|r 90 PFA--TLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKE--N-ILSAVEGDDFFKTFIGQLIT 164 (343)
Q Consensus 90 diD--e~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~--~-~~~~~~~~~~~~lt~akl~~ 164 (343)
T Consensus 84 iS~ell~ds~~~~~~~i~~~l~~~~~~~~d~a~l~G-~G~~~-~p~G----il~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (278)
T pfam05065 84 ISNELLDDSAIDLEAYVADELAEAFARKEDAAFLNG-DGTGT-KPKG----ILTSTGATAVGAAAGVKTAAGNTADDLID 157 (278)
T ss_pred ECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCC-CCCC----EECCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf 139987414677999999999999999997785007-89777-8665----11346531231144435545425999999
Q ss_pred HHH-HHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999-8602388975460799769999987506710100000134311367012274358997077787666654443333
Q gi|254781210|r 165 AKS-IFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPG 243 (343)
Q Consensus 165 a~~-~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~ 243 (343)
T Consensus 158 ~~~~~l~~~~~~~----~~~v~n~~~~~~l~~lkd-~~G~~l~~~~~-~~~~~~l~G~pv~~~~~~~~~~---------- 221 (278)
T pfam05065 158 LIYASLDAAYRAN----AVWVMNPSTLAALRKLKD-ANGRYLWQPSL-TAGTPTLLGRPVVVTEDMPDGP---------- 221 (278)
T ss_pred HHHHHCCCCCCCC----CEEEECHHHHHHHHHHCC-CCCCEEECCCC-CCCCCCEEEEEEEEECCCCCCC----------
T ss_conf 9860224013537----699988999999985225-69977843566-6788707101578748998671----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCC---CCCHHEEEHEECCCCEEECCCC
Q ss_conf 3456556677766666666545565513799984541034451353156554165---3203300010002635654152
Q gi|254781210|r 244 LIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPG---KWHAPQITLTSSFGATRIEPDK 320 (343)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~---k~~a~~i~~~~s~Ga~~l~~~~ 320 (343)
T Consensus 222 -----------------------------~~~Gdfs~~~~~~~~~~~i~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~A 272 (278)
T pfam05065 222 -----------------------------ILFGDFSAYIIVDREGVTVERLRDPYTAFEKNQVGFRATERVDGAVVDPEA 272 (278)
T ss_pred -----------------------------EEEEEHHHCEEEEECCCEEEEECCCHHHCCCCEEEEEEEEEECCCCCCHHH
T ss_conf -----------------------------999812888999947848999515512214884999999998883837637
Q ss_pred EEEEE
Q ss_conf 58999
Q gi|254781210|r 321 ILGIE 325 (343)
Q Consensus 321 vv~I~ 325 (343)
T Consensus 273 ~~~l~ 277 (278)
T pfam05065 273 FKKLK 277 (278)
T ss_pred EEEEE
T ss_conf 45864