HHsearch alignment for GI: 254781210 and conserved domain: pfam05065

>pfam05065 Phage_capsid Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.
Probab=99.26  E-value=5.8e-09  Score=69.55  Aligned_cols=259  Identities=18%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCE--EEEECCCC-EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf             88677899999871124301002303126740--68713462-3553325898743245687626999823443112212
Q gi|254781210|r   13 YEFKKHVELALQETKSKLRPTVTEQATEGEAS--ALVEVFKP-TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERID   89 (343)
Q Consensus        13 ~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks--~~f~~~G~-~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~Id   89 (343)
T Consensus         7 ~~~~~~ii~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~v~E~-~~~~~~~~~-~f~~i~l~~~k~~~~~~   83 (278)
T pfam05065         7 EEISTEIIELLRE-KSPLRQLATVVPVTTGESGSLTIPKRTGGATAGWVGEG-AAAPETDTP-TFGEVTLPVKKLAALVP   83 (278)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHCEEEECCCCCCCCEEEEEECCCCCEEEECCC-CCCCCCCCC-CEEEEEEEEEEEEEEEE
T ss_conf             9999999999986-53586624799815898786688877376416885468-867766777-33588871089999961


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--C-EEEECCCCCCCCCCHHHHHH
Q ss_conf             688--887410068999999999987768899999862014556666654456666--4-02302357764222899999
Q gi|254781210|r   90 PFA--TLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKE--N-ILSAVEGDDFFKTFIGQLIT  164 (343)
Q Consensus        90 diD--e~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~--~-~~~~~~~~~~~~lt~akl~~  164 (343)
T Consensus        84 iS~ell~ds~~~~~~~i~~~l~~~~~~~~d~a~l~G-~G~~~-~p~G----il~~~~~~~~~~~~~~~~~~~~~~~~i~~  157 (278)
T pfam05065        84 ISNELLDDSAIDLEAYVADELAEAFARKEDAAFLNG-DGTGT-KPKG----ILTSTGATAVGAAAGVKTAAGNTADDLID  157 (278)
T ss_pred             ECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCCC-CCCC----EECCCCCCEEECCCCCCCCCCCCHHHHHH
T ss_conf             139987414677999999999999999997785007-89777-8665----11346531231144435545425999999


Q ss_pred             HHH-HHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             999-8602388975460799769999987506710100000134311367012274358997077787666654443333
Q gi|254781210|r  165 AKS-IFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPG  243 (343)
Q Consensus       165 a~~-~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~  243 (343)
T Consensus       158 ~~~~~l~~~~~~~----~~~v~n~~~~~~l~~lkd-~~G~~l~~~~~-~~~~~~l~G~pv~~~~~~~~~~----------  221 (278)
T pfam05065       158 LIYASLDAAYRAN----AVWVMNPSTLAALRKLKD-ANGRYLWQPSL-TAGTPTLLGRPVVVTEDMPDGP----------  221 (278)
T ss_pred             HHHHHCCCCCCCC----CEEEECHHHHHHHHHHCC-CCCCEEECCCC-CCCCCCEEEEEEEEECCCCCCC----------
T ss_conf             9860224013537----699988999999985225-69977843566-6788707101578748998671----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCC---CCCHHEEEHEECCCCEEECCCC
Q ss_conf             3456556677766666666545565513799984541034451353156554165---3203300010002635654152
Q gi|254781210|r  244 LIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPG---KWHAPQITLTSSFGATRIEPDK  320 (343)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~---k~~a~~i~~~~s~Ga~~l~~~~  320 (343)
T Consensus       222 -----------------------------~~~Gdfs~~~~~~~~~~~i~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~A  272 (278)
T pfam05065       222 -----------------------------ILFGDFSAYIIVDREGVTVERLRDPYTAFEKNQVGFRATERVDGAVVDPEA  272 (278)
T ss_pred             -----------------------------EEEEEHHHCEEEEECCCEEEEECCCHHHCCCCEEEEEEEEEECCCCCCHHH
T ss_conf             -----------------------------999812888999947848999515512214884999999998883837637


Q ss_pred             EEEEE
Q ss_conf             58999
Q gi|254781210|r  321 ILGIE  325 (343)
Q Consensus       321 vv~I~  325 (343)
T Consensus       273 ~~~l~  277 (278)
T pfam05065       273 FKKLK  277 (278)
T ss_pred             EEEEE
T ss_conf             45864