Query gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs 163 out of 290
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 23:24:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781210.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ohg_A Major capsid protein; 99.1 1.2E-08 3.7E-13 67.3 17.3 252 21-327 23-279 (282)
2 >2e0z_A Virus-like particle; b 97.6 0.0013 4E-08 38.9 11.4 156 105-325 189-345 (345)
3 >3c5b_A Putative uncharacteriz 97.5 0.00017 4.9E-09 44.0 5.2 109 13-122 21-131 (253)
4 >3dkt_A Maritimacin; enzyme en 71.9 5.4 0.00016 18.6 3.9 65 156-231 12-77 (93)
5 >2raw_B Borealin; cell cycle, 14.1 71 0.0021 12.2 1.9 27 9-35 4-30 (68)
6 >1jmt_B Splicing factor U2AF 6 10.1 83 0.0025 11.8 0.4 19 172-193 8-26 (28)
7 >3l41_A BRCT-containing protei 9.3 1E+02 0.0031 11.3 1.0 16 316-331 46-61 (80)
8 >2k4z_A DSRR; ISCA/SUFA/HESB l 9.2 1E+02 0.0031 11.3 3.4 45 16-60 30-74 (77)
9 >1g6e_A Antifungal protein; al 8.7 1.1E+02 0.0032 11.1 3.9 44 213-304 30-74 (87)
10 >3gtd_A Fumarase C, fumarate h 7.8 1.2E+02 0.0036 10.9 1.3 34 302-335 13-46 (58)
No 1
>>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} (A:)
Probab=99.14 E-value=1.2e-08 Score=67.35 Aligned_cols=252 Identities=9% Similarity=-0.007 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHCCEECCCCCCCEEEEECCC--CEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9998711243010023031267406871346--23553325898743245687626999823443112212688887410
Q gi|254781210|r 21 LALQETKSKLRPTVTEQATEGEASALVEVFK--PTEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGI 98 (343)
Q Consensus 21 ~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G--~~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~ 98 (343)
....+ .+.++..++..++.++ +..+++.. ...+....++ ...+..+...+........+.....| ..+-++...
T Consensus 23 ~~~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~a~~v~E~-~~~~~~~~~~~~v~~~~~k~~~~~~i-s~ell~~~~ 98 (282)
T 1ohg_A 23 MPGLR-RLTIRDLLAQGRTSSN-ALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQA-SRQVMDDAP 98 (282)
T ss_dssp CCCCC-CCCSGGGSEEEECCSS-EEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEE-EHHHHHHST
T ss_pred HHHHC-HHHHHHHCCEEEECCC-CEEEEEEECCCCCEEEECCC-CCCCCCCCCCCCEEEEEEEEEEEECC-CHHHHHHHH
T ss_conf 75403-0457865053763799-67988783576744886158-86765645423135111899999647-989975179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06899999999998776889999986201455666665445666640230235776422289999999986023889754
Q gi|254781210|r 99 NPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDS 178 (343)
Q Consensus 99 d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g 178 (343)
|+.+...+.++.+++++.|+.++.... .....+ +..................+.+.+..+...+..++.+..
T Consensus 99 ~~~~~v~~~l~~~~a~~~d~~~~~g~g---~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~- 170 (282)
T 1ohg_A 99 MLQSYINNRLMYGLALKEEGQLLNGDG---TGDNLE----GLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS- 170 (282)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSCCC---STTSCC----CHHHHCEECCGGGCCTTCCHHHHHHHHHHHTGGGTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-
T ss_conf 999999999999999997678860667---677755----421111121011123565414679999986764456675-
Q ss_pred CEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 60799769999987506710100000134311367012274358997077787666654443333345655667776666
Q gi|254781210|r 179 EQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTV 258 (343)
Q Consensus 179 ~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
. ++.+|..|..|.....-..+. -.....+|..++++|++++.++++|.+..
T Consensus 171 --~-~vm~~~~~~~l~~lkd~~g~~--l~~~~~~~~~~~l~G~pV~~~~~~~~~~~------------------------ 221 (282)
T 1ohg_A 171 --G-IVLNPRDWHNIALLKDNEGRY--IFGGPQAFTSNIMWGLPVVPTKAQAAGTF------------------------ 221 (282)
T ss_dssp --E-EEECHHHHHHHHTCBCTTSCB--TTTTTTSCCCSEETTEEEEECTTSCTTEE------------------------
T ss_pred --E-EEEEHHHHHHHHHEECCCCCE--EECCCCCCCCCEECCEEEEECCCCCCCEE------------------------
T ss_conf --5-998053644565212689966--53134557764035703787178876606------------------------
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCC---CCHHEEEHEECCCCEEECCCCEEEEEEC
Q ss_conf 66665455655137999845410344513531565541653---2033000100026356541525899954
Q gi|254781210|r 259 KSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGK---WHAPQITLTSSFGATRIEPDKILGIEIS 327 (343)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k---~~a~~i~~~~s~Ga~~l~~~~vv~I~~~ 327 (343)
.+.=.++++......++.+++.+.+++ .....+..-+-+|...++|++++.++-.
T Consensus 222 --------------~~gd~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~a~~~~~~~ 279 (282)
T 1ohg_A 222 --------------TVGGFDMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFS 279 (282)
T ss_dssp --------------EEECHHHHEEEEESEEEEEEEESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEECC
T ss_pred --------------EEEECCCEEEEEEECCCEEEEECCCCHHHHCCEEEEEEEEEEEEEEECCCEEEEEEEE
T ss_conf --------------8850444179999124089995054106558909999999984377068829999983
No 2
>>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} (A:)
Probab=97.64 E-value=0.0013 Score=38.91 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99999998776889999986201455666665445666640230235776422289999999986023889754607997
Q gi|254781210|r 105 ASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVL 184 (343)
Q Consensus 105 ~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v 184 (343)
...++..+|+..|+.|+..+..+...+....+ .-...+-....+..|...|..+.+- ++.+|
T Consensus 189 ~~~aa~~~a~~Ed~~i~~g~~~~~~~~~~~~s--------------~~~~~~~~~~~i~~a~~~l~~~~~g----py~lv 250 (345)
T 2e0z_A 189 ATKAGELLVKDEESLVIREILSTEGIKKMKLS--------------SWDNPEEALNDLMNALQEASNASAG----PFGLI 250 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEECCC--------------CCCSHHHHHHHHHHHHHHHHTTCCS----CEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC--------------CCCCCCHHHHHHHHHHHHHHHCCCC----CEEEE
T ss_conf 99999999998898865340001665524578--------------8766014999999999999954889----86999
Q ss_pred CCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69999987506710100000134311367012274358997077787666654443333345655667776666666654
Q gi|254781210|r 185 IPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKF 264 (343)
Q Consensus 185 ~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
++|..|..|.....- .+-+.--.|.++.|=+||.++.++.+
T Consensus 251 l~~~~y~~l~~~~~~-------~g~~~~~~i~~l~~g~i~~~p~i~~~-------------------------------- 291 (345)
T 2e0z_A 251 INPKRYAKLLKIYEK-------SGKMLVEVLKEIFRGGIIVTLNIDEN-------------------------------- 291 (345)
T ss_dssp ECHHHHHHHCSBCST-------TSCBHHHHHHHHCTTEEEECTTSCTT--------------------------------
T ss_pred ECHHHHHHHHCCCCC-------CCCCHHHHHHHHHCCCEEECCCCCCC--------------------------------
T ss_conf 888999998523678-------99718999999867986876740588--------------------------------
Q ss_pred CCCCCCEEEEEEECCC-CEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEECCCCEEEEE
Q ss_conf 5565513799984541-034451353156554165320330001000263565415258999
Q gi|254781210|r 265 EDTKIKYVLPIYCKSA-VVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIEPDKILGIE 325 (343)
Q Consensus 265 ~~~~~~~~~~~~hksA-vg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~~~vv~I~ 325 (343)
..+++-.+.+ +-+++|+|+.+.-.-+.+. .+..+..-++.=-..+|+++|.++
T Consensus 292 ------~a~l~s~~~~~~~l~~g~d~~i~y~~~~~~--~~~~~~~E~~~~~v~~~~a~v~l~ 345 (345)
T 2e0z_A 292 ------KVIIFANTPAVLDVVVGQDVTLQELGPEGD--DVAFLVSEAIGIRIKNPEAIVVLE 345 (345)
T ss_dssp ------CEEEEECSTTTEEEEEEEEEEEEECCCCSS--EEEEEEEEEEEEEESCGGGEEEEC
T ss_pred ------EEEEEECCCCCEEEEEECCEEEEECCCCCC--EEEEEEEEEEEEEECCCCEEEECC
T ss_conf ------189997689865899723325520146787--079999988898973886588609
No 3
>>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold, icosahedral virus; 4.50A {Enterobacteria phage EPSILON15} (A:1-253)
Probab=97.51 E-value=0.00017 Score=44.03 Aligned_cols=109 Identities=4% Similarity=-0.187 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 88677899999871124301002303126740687134623553325898743245687626999823443112212688
Q gi|254781210|r 13 YEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFA 92 (343)
Q Consensus 13 ~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiD 92 (343)
+++..++.-..++ .+.|+..++.++...+....+++.........+......+......+.+......+..-..|.+.-
T Consensus 21 ~~~~~~Ii~~~~~-~s~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~E~~~~~~~~~~f~~v~~~~~k~~~~~~is~el 99 (253)
T 3c5b_A 21 NGRIARIVEQLAK-TNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKAL 99 (253)
T ss_pred CCCHHHHHHHHHH-CCHHHHHCCEEECCCCCCCEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHH
T ss_conf 7523479998763-406775183565127767426898438975115168874876654787656677526730024999
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88--7410068999999999987768899999
Q gi|254781210|r 93 TL--DSGINPLLPYASLATAAMHRKQDEAILK 122 (343)
Q Consensus 93 e~--k~~~d~rs~y~~~~g~ALar~~D~~I~~ 122 (343)
.. ....|..+...+.++.+++++.|+.++.
T Consensus 100 l~~~d~~~~~~~~i~~~l~~a~~~~~~~a~i~ 131 (253)
T 3c5b_A 100 ADRSNNAAAFRVSENMGKLQGFNNKVARYSIY 131 (253)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97429888999998899999999999987421
No 4
>>3dkt_A Maritimacin; enzyme encapsulation, nanocompartment, oxidative stress, ferritin-like protein, HK97-fold, antibiotic; 3.10A {Thermotoga SP} (A:135-219,A:258-265)
Probab=71.89 E-value=5.4 Score=18.56 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEE-EEEEEEECCCCC
Q ss_conf 2228999999998602388975460799769999987506710100000134311367012274-358997077787
Q gi|254781210|r 156 KTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFA-GVWFINMEKVPG 231 (343)
Q Consensus 156 ~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~-G~~~i~s~~lp~ 231 (343)
+-..+.+.+|..+|+++.|+ | ++.+++.|+.|..|....+ . +-+.--.|.++. |-++|.++.++.
T Consensus 12 ~~~~~~V~~ai~~L~~aGv~--G-PYaLvlsp~~y~~L~~~~~-------~-gypl~~~I~~lv~dG~Ii~sP~i~g 77 (93)
T 3dkt_A 12 KDLLEAIVRALSIFSKDGIE--G-PYTLVINTDRWINFLKEEA-------G-HYPLEKRVEECLRGGKIITTPRIED 77 (93)
T ss_dssp HHHHHHHHHHHHHHHTTTCC--S-SEEEEEEHHHHHHHHHHSS-------S-SSCHHHHHHHHTTSCEEEEESSCSS
T ss_pred HHHHHHHHHHHHHHHHCCCC--C-CEEEEECHHHHHHHHHCCC-------C-CCEEHHHHHHHCCCCCEEECCCCCC
T ss_conf 67999999999999975899--9-8599989999999861168-------9-8413577887624885797755486
No 5
>>2raw_B Borealin; cell cycle, dasrab, chromosomal passender complex, IAP, BIR, alternative splicing, apoptosis, cell division, centromere; 2.40A {Homo sapiens} PDB: 2rax_B (B:)
Probab=14.10 E-value=71 Score=12.21 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 799988677899999871124301002
Q gi|254781210|r 9 TANIYEFKKHVELALQETKSKLRPTVT 35 (343)
Q Consensus 9 ~aFv~q~~~~v~~a~qqk~s~L~~~V~ 35 (343)
++|+++|..+|+.--.|+.+...++++
T Consensus 4 ~~FL~DFD~eve~ri~em~~~~e~l~~ 30 (68)
T 2raw_B 4 ASFLKDFDREVEIRIKQIESDRQNLLK 30 (68)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 6
>>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} (B:)
Probab=10.14 E-value=83 Score=11.84 Aligned_cols=19 Identities=5% Similarity=0.087 Sum_probs=12.7
Q ss_pred CCCCCCCCEEEEECCHHHHHHH
Q ss_conf 3889754607997699999875
Q gi|254781210|r 172 RYIDVDSEQVYVLIPSDVWASL 193 (343)
Q Consensus 172 ~~Vp~~g~~~~~v~~p~~~~~L 193 (343)
=|||+.| |--+.|.+|..+
T Consensus 8 WDvPP~G---~eh~tP~qYKaM 26 (28)
T 1jmt_B 8 WDVPPPG---FEHITPMQYKAM 26 (28)
T ss_dssp BTCCCTT---CTTSCHHHHHHT
T ss_pred CCCCCCC---CCCCCHHHHHHH
T ss_conf 5689975---231588787761
No 7
>>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* (A:114-193)
Probab=9.31 E-value=1e+02 Score=11.29 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=10.7
Q ss_pred ECCCCEEEEEECHHHH
Q ss_conf 5415258999541332
Q gi|254781210|r 316 IEPDKILGIEISKDSL 331 (343)
Q Consensus 316 l~~~~vv~I~~~e~~~ 331 (343)
|++-.+|-|.|.||+-
T Consensus 46 ledgnvvlitcnedsh 61 (80)
T 3l41_A 46 LEDGNVVLITCNEDSH 61 (80)
T ss_dssp HHHCCEEEEECGGGHH
T ss_pred CCCCCCEEEEECCCHH
T ss_conf 4688618998565212
No 8
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:1-41,A:90-125)
Probab=9.19 E-value=1e+02 Score=11.27 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECC
Q ss_conf 778999998711243010023031267406871346235533258
Q gi|254781210|r 16 KKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60 (343)
Q Consensus 16 ~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~ 60 (343)
...|..++.|-++.|.++|...--.....+.|..+.+-.-+|.-|
T Consensus 30 aeqvlkaakqggsLLeg~vlDfveie~g~~hFIFmNPNDPnY~PP 74 (77)
T 2k4z_A 30 AEQVLKAAKQGGSLLDQTTLDYVELEPGQFHFIFLNPRDPTYRPP 74 (77)
T ss_dssp HHHHHHHHHHSSHHHTTEEEEEEEEETTEEEEEEECSSSCSSCCC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCC
T ss_conf 999999998579405976998862788727879879399988999
No 9
>>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} (A:)
Probab=8.69 E-value=1.1e+02 Score=11.15 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCE-EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEE
Q ss_conf 701-2274358997077787666654443333345655667776666666654556551379998454103445135315
Q gi|254781210|r 213 GKI-EAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDV 291 (343)
Q Consensus 213 G~I-~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ 291 (343)
|.. ..++|++|+.|.| +.+.+-|++. +.|++.
T Consensus 30 g~mpvaiygvnwiesgn-----------------------------------------nvvt~~fqrn------ls~prl 62 (87)
T 1g6e_A 30 GTMPVAIYGVNWVESGN-----------------------------------------NVVTLQFQRN------LSDPRL 62 (87)
T ss_dssp CEECCCCCSEEEEEECS-----------------------------------------SCEEEEEESC------TTTTCE
T ss_pred CCCEEEEEEEEEEEECC-----------------------------------------CEEEEEEECC------CCCCCE
T ss_conf 86127999745786089-----------------------------------------5899996305------798640
Q ss_pred EEEECCCCCCHHE
Q ss_conf 6554165320330
Q gi|254781210|r 292 QHSKDPGKWHAPQ 304 (343)
Q Consensus 292 ei~~~~~k~~a~~ 304 (343)
|.--. +||-+|+
T Consensus 63 etitl-~kw~sw~ 74 (87)
T 1g6e_A 63 ETITL-QKWGSWN 74 (87)
T ss_dssp EEEEE-CTTEEEC
T ss_pred EEEEH-HHCCCCC
T ss_conf 28982-2416889
No 10
>>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, cytoplasm, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} (A:1-58)
Probab=7.83 E-value=1.2e+02 Score=10.93 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHEEEHEECCCCEEECCCCEEEEEECHHHHCCCE
Q ss_conf 3300010002635654152589995413322530
Q gi|254781210|r 302 APQITLTSSFGATRIEPDKILGIEISKDSLKGVP 335 (343)
Q Consensus 302 a~~i~~~~s~Ga~~l~~~~vv~I~~~e~~~~~~~ 335 (343)
.........++..|++-+...++++-++++-|+-
T Consensus 13 ~~~~~~~~~~~~~R~E~D~lG~~~vP~~~yyG~q 46 (58)
T 3gtd_A 13 EAQTQGPGSMKNYRIESDSFGEIQIEEKFYWGAQ 46 (58)
T ss_dssp -----------CEEEEEETTEEEEEETTCCCCHH
T ss_pred HHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHH
T ss_conf 7510476665583210348876217775630398
Done!