Query         gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs    163 out of 290
Neff          7.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:53:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781210.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2ft1a1 d.183.1.1 (A:104-383)   98.9 2.1E-07 1.5E-11   58.2  17.6  245   28-326    29-278 (280)
  2 d1cjxa2 d.32.1.3 (A:154-356) 4  22.6     8.7 0.00063   15.2   0.0   33  157-195    90-122 (203)
  3 d2ga1a1 a.4.1.16 (A:1-102) Hyp  20.2      19  0.0014   13.3   1.4   21   16-36     15-35  (102)
  4 d1jjcb4 d.58.13.1 (B:682-785)   14.4      28  0.0021   12.3   2.9   16  215-230    41-56  (104)
  5 d1sp8a2 d.32.1.3 (A:208-431) 4  13.0      20  0.0015   13.1   0.0   39  156-196    96-134 (224)
  6 d1v0ea1 b.68.1.2 (A:245-760) E   9.9      40  0.0029   11.4   2.0   32  300-331   449-480 (516)
  7 d1g6ea_ b.11.1.6 (A:) Antifung   9.3      42  0.0031   11.3   3.9   44  213-304    30-74  (87)
  8 d2cvla1 d.79.1.1 (A:1-124) Put   8.5      45  0.0033   11.1   1.1   19  309-327   102-120 (124)
  9 d2qamc2 b.40.4.5 (C:61-124) N-   7.8      45  0.0033   11.1   0.3   45  290-342    17-61  (64)
 10 d1sqda2 d.32.1.3 (A:181-410) 4   7.6      48  0.0035   11.0   0.4   38  156-194   109-146 (230)

No 1  
>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
Probab=98.89  E-value=2.1e-07  Score=58.17  Aligned_cols=245  Identities=11%  Similarity=0.014  Sum_probs=143.2

Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCC--EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2430100230312674068713462--35533258987432456876269998234431122126888874100689999
Q gi|254781210|r   28 SKLRPTVTEQATEGEASALVEVFKP--TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYA  105 (343)
Q Consensus        28 s~L~~~V~~~t~~~Gks~~f~~~G~--~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~d~rs~y~  105 (343)
                      +.+|++++..+.. +.+..+|+...  ..|....++ +..|..+...+.+.....-+..-..|.+.-. +-..+..+...
T Consensus        29 ~~vr~~~~~~~~~-~~~~~~~~~~~~~~~a~~v~Eg-~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell-~ds~~~~~~v~  105 (280)
T d2ft1a1          29 LTIRDLLAQGRTS-SNALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQASRQVM-DDAPMLQSYIN  105 (280)
T ss_dssp             CCSGGGSEEEECC-SSEEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEEEHHHH-HHSTTHHHHHH
T ss_pred             HHHHHHHCEEEEC-CCCEEEEEEECCCCCEEEECCC-CCCCCCCCCCCCCCCCCEEEEEEECCCHHHH-HHHHHHHHHHH
T ss_conf             4478660537727-9978988885476866896268-8777565443434344589999953699998-41178999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             99999987768899999862014556666654456666402302357764222899999999860238897546079976
Q gi|254781210|r  106 SLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLI  185 (343)
Q Consensus       106 ~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~  185 (343)
                      +.++.+++++.|+.++.   |.......    ....................+.+.++.+...++.++.+..   .|+ +
T Consensus       106 ~~l~~~~a~~~d~a~l~---G~g~~~~~----~gl~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~-~  174 (280)
T d2ft1a1         106 NRLMYGLALKEEGQLLN---GDGTGDNL----EGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS---GIV-L  174 (280)
T ss_dssp             HHHHHHHHHHHHHHHHS---CCSSTTSC----CCHHHHSEECCGGGCCSSCCHHHHHHHHHHHHHTTSCCCC---EEE-E
T ss_pred             HHHHHHHHHHHHHHHHC---CCCCCCCC----CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC---EEE-E
T ss_conf             99999999986566530---55667776----6521014444322344654321458999987765135575---279-7


Q ss_pred             CHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999875067101000001343113670122743589970777876666544433333456556677766666666545
Q gi|254781210|r  186 PSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFE  265 (343)
Q Consensus       186 ~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
                      +|..|..|.....-.. .|.- .....|.-++++|++++.++.+|.....                             -
T Consensus       175 ~~~~~~~l~~lkd~~G-~~l~-~~~~~~~~~~l~G~Pv~~s~~~~~~~~~-----------------------------~  223 (280)
T d2ft1a1         175 NPRDWHNIALLKDNEG-RYIF-GGPQAFTSNIMWGLPVVPTKAQAAGTFT-----------------------------V  223 (280)
T ss_dssp             CHHHHHHHHTCBCTTS-CBSS-STTTCCCCSEETTEEEEECTTSCTTEEE-----------------------------E
T ss_pred             CHHHHHHHHHCCCCCC-CEEC-CCCCCCCCCCCCCEEEEEECCCCCCEEE-----------------------------E
T ss_conf             2768877761116788-6502-5644577750477479972798752489-----------------------------9


Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCEEEEEECCC-C--CCHHEEEHEECCCCEEECCCCEEEEEE
Q ss_conf             565513799984541034451353156554165-3--203300010002635654152589995
Q gi|254781210|r  266 DTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPG-K--WHAPQITLTSSFGATRIEPDKILGIEI  326 (343)
Q Consensus       266 ~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~-k--~~a~~i~~~~s~Ga~~l~~~~vv~I~~  326 (343)
                      +++         +.+..+....++.+++.+.+. .  +.-..+.+.+-+|....+|+++|....
T Consensus       224 gdf---------~~~~~~~~r~~~~v~~~~~~~~~f~~~~v~~ra~~r~~~~v~~~~Afv~g~~  278 (280)
T d2ft1a1         224 GGF---------DMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTF  278 (280)
T ss_dssp             ECH---------HHHEEEEESEEEEEEEESSSTTHHHHTEEEEEEEEEECEEESCGGGEEEEEC
T ss_pred             EEH---------HHEEEEEEECCCEEEEEECCCCHHHCCEEEEEEEEEEEEEEECCCEEEEEEE
T ss_conf             603---------7728999913518998414511644790999999998558807881999996


No 2  
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=22.60  E-value=8.7  Score=15.17  Aligned_cols=33  Identities=12%  Similarity=0.326  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHC
Q ss_conf             228999999998602388975460799769999987506
Q gi|254781210|r  157 TFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFA  195 (343)
Q Consensus       157 lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~  195 (343)
                      +..+-|.++.+.|.+++|.      ++-.||..||++|.
T Consensus        90 f~vdDI~aav~~L~~~Gv~------fL~~pp~~Yy~~l~  122 (203)
T d1cjxa2          90 FLTDDLVKTWDALKKIGMR------FMTAPPDTYYEMLE  122 (203)
T ss_dssp             EEESCHHHHHHHHHHTTCC------BCCCCCHHHHHTHH
T ss_pred             EEECCHHHHHHHHHHCCCC------CCCCCHHHHHHHHH
T ss_conf             9818999999999856775------44573066889998


No 3  
>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493 orthologue) {Anabaena variabilis [TaxId: 1172]}
Probab=20.17  E-value=19  Score=13.25  Aligned_cols=21  Identities=5%  Similarity=-0.075  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCEE
Q ss_conf             778999998711243010023
Q gi|254781210|r   16 KKHVELALQETKSKLRPTVTE   36 (343)
Q Consensus        16 ~~~v~~a~qqk~s~L~~~V~~   36 (343)
                      ..++..+...+...|++-+..
T Consensus        15 ~~~~~~~~~~~~~~l~~~I~i   35 (102)
T d2ga1a1          15 PEELVDQALNYVQMLQNPIQI   35 (102)
T ss_dssp             CHHHHHHHHHHHHHHHCSEEC
T ss_pred             HHHHHHHHHHHHHHHHCCEEE
T ss_conf             799997688999997688251


No 4  
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]}
Probab=14.40  E-value=28  Score=12.26  Aligned_cols=16  Identities=19%  Similarity=0.193  Sum_probs=7.0

Q ss_pred             EEEEEEEEEEEECCCC
Q ss_conf             1227435899707778
Q gi|254781210|r  215 IEAFAGVWFINMEKVP  230 (343)
Q Consensus       215 I~~~~G~~~i~s~~lp  230 (343)
                      +.++-=|++|.-.++|
T Consensus        41 l~~v~lfDvy~g~~~~   56 (104)
T d1jjcb4          41 LESLALFDLYQGPPLP   56 (104)
T ss_dssp             EEEEEEEEEECSTTSC
T ss_pred             CCCCEEEEEECCCCCC
T ss_conf             2553587688179989


No 5  
>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}
Probab=13.04  E-value=20  Score=13.10  Aligned_cols=39  Identities=5%  Similarity=-0.045  Sum_probs=26.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCC
Q ss_conf             22289999999986023889754607997699999875067
Q gi|254781210|r  156 KTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFAL  196 (343)
Q Consensus       156 ~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~  196 (343)
                      ++.++-|.++.+.|.++.+-. | -.++..||..||+++..
T Consensus        96 Af~vdDI~~av~~L~arGv~~-G-~~fl~~p~~~Yy~~~~~  134 (224)
T d1sp8a2          96 ALASDDVLRTLREMQARSAMG-G-FEFMAPPTSDYYDGVRR  134 (224)
T ss_dssp             EEEETTHHHHHHHHHTSGGGT-S-CCBCCCCCHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHCCCCC-C-CEECCCCHHHHHHHHHH
T ss_conf             997188999999998603233-4-11235612455556876


No 6  
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}
Probab=9.93  E-value=40  Score=11.43  Aligned_cols=32  Identities=9%  Similarity=0.146  Sum_probs=18.0

Q ss_pred             CCHHEEEHEECCCCEEECCCCEEEEEECHHHH
Q ss_conf             20330001000263565415258999541332
Q gi|254781210|r  300 WHAPQITLTSSFGATRIEPDKILGIEISKDSL  331 (343)
Q Consensus       300 ~~a~~i~~~~s~Ga~~l~~~~vv~I~~~e~~~  331 (343)
                      +++..|....-.|.+.+.+.-+.-|---||-+
T Consensus       449 yqg~ivns~vgvgsv~vkd~~lyyifgged~f  480 (516)
T d1v0ea1         449 YQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF  480 (516)
T ss_dssp             BCCSSSCCCSEEEEEEEETTEEEEEEEECCSC
T ss_pred             HCCCEEECCCCCEEEEEECCEEEEEECCCCCC
T ss_conf             11750211433015897578799995574347


No 7  
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]}
Probab=9.26  E-value=42  Score=11.28  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             CCE-EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEE
Q ss_conf             701-2274358997077787666654443333345655667776666666654556551379998454103445135315
Q gi|254781210|r  213 GKI-EAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDV  291 (343)
Q Consensus       213 G~I-~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~  291 (343)
                      |.. ..++|++|+.|.|                                         +.+.+-|++.      +.|++.
T Consensus        30 g~mpvaiygvnwiesgn-----------------------------------------nvvt~~fqrn------ls~prl   62 (87)
T d1g6ea_          30 GTMPVAIYGVNWVESGN-----------------------------------------NVVTLQFQRN------LSDPRL   62 (87)
T ss_dssp             CEECCCCCSEEEEEECS-----------------------------------------SCEEEEEESC------TTTTCE
T ss_pred             CCCEEEEEEEEEEEECC-----------------------------------------CEEEEEEECC------CCCCCE
T ss_conf             87407999745886089-----------------------------------------5899996305------788521


Q ss_pred             EEEECCCCCCHHE
Q ss_conf             6554165320330
Q gi|254781210|r  292 QHSKDPGKWHAPQ  304 (343)
Q Consensus       292 ei~~~~~k~~a~~  304 (343)
                      |.--. +||-+|+
T Consensus        63 etitl-~kw~sw~   74 (87)
T d1g6ea_          63 ETITL-QKWGSWN   74 (87)
T ss_dssp             EEEEE-CTTEEEC
T ss_pred             EEEEH-HHHCCCC
T ss_conf             58985-6726899


No 8  
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=8.52  E-value=45  Score=11.10  Aligned_cols=19  Identities=0%  Similarity=0.041  Sum_probs=12.1

Q ss_pred             ECCCCEEECCCCEEEEEEC
Q ss_conf             0026356541525899954
Q gi|254781210|r  309 SSFGATRIEPDKILGIEIS  327 (343)
Q Consensus       309 ~s~Ga~~l~~~~vv~I~~~  327 (343)
                      ...|+..|.|+..|||+|.
T Consensus       102 t~v~v~~L~~~~lVEIe~i  120 (124)
T d2cvla1         102 ATVAVKALPRGVRVEVACV  120 (124)
T ss_dssp             EEEECSCCGGGCSEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEEE
T ss_conf             7999576799999999999


No 9  
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}
Probab=7.85  E-value=45  Score=11.11  Aligned_cols=45  Identities=20%  Similarity=0.084  Sum_probs=29.6

Q ss_pred             EEEEEECCCCCCHHEEEHEECCCCEEECCCCEEEEEECHHHHCCCEECCCCCC
Q ss_conf             15655416532033000100026356541525899954133225300255445
Q gi|254781210|r  290 DVQHSKDPGKWHAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKA  342 (343)
Q Consensus       290 ~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~~~vv~I~~~e~~~~~~~~~~~~~~  342 (343)
                      -.+++|+|.|+ +......+.=|--       --|-|.|+.-.|--+..|.+|
T Consensus        17 V~~IEYDPnRs-A~IALv~y~dG~k-------~Yilap~gl~vGd~I~sg~~a   61 (64)
T d2qamc2          17 VERLEYDPNRS-ANIALVLYKDGER-------RYILAPKGLKAGDQIQSGVDA   61 (64)
T ss_dssp             CCCCCCCSSSS-SCCBCCCBTTSCC-------CCBCCBSSCCTTCEECCSSSC
T ss_pred             EEEEEECCCCC-CEEEEEECCCCCE-------EEEECCCCCCCCCEEEECCCC
T ss_conf             99989679998-1589999479969-------999856999899999879898


No 10 
>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.61  E-value=48  Score=10.96  Aligned_cols=38  Identities=13%  Similarity=0.067  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             222899999999860238897546079976999998750
Q gi|254781210|r  156 KTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLF  194 (343)
Q Consensus       156 ~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll  194 (343)
                      ++..+-|.++.+.|+++.+- .|-+.+..+|+.+|.+|-
T Consensus       109 Af~tdDI~aav~~LrarG~~-~G~~f~~~~p~~YY~~l~  146 (230)
T d1sqda2         109 ALMSEDIFRTLREMRKRSSI-GGFDFMPSPPPTYYQNLK  146 (230)
T ss_dssp             EEEESCHHHHHHHHHHHGGG-TSCCBCCCCCHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHH
T ss_conf             99808899999999972013-674204689557888898


Done!