Query gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 343 No_of_seqs 163 out of 290 Neff 7.0 Searched_HMMs 13730 Date Wed Jun 1 11:53:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781210.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2ft1a1 d.183.1.1 (A:104-383) 98.9 2.1E-07 1.5E-11 58.2 17.6 245 28-326 29-278 (280) 2 d1cjxa2 d.32.1.3 (A:154-356) 4 22.6 8.7 0.00063 15.2 0.0 33 157-195 90-122 (203) 3 d2ga1a1 a.4.1.16 (A:1-102) Hyp 20.2 19 0.0014 13.3 1.4 21 16-36 15-35 (102) 4 d1jjcb4 d.58.13.1 (B:682-785) 14.4 28 0.0021 12.3 2.9 16 215-230 41-56 (104) 5 d1sp8a2 d.32.1.3 (A:208-431) 4 13.0 20 0.0015 13.1 0.0 39 156-196 96-134 (224) 6 d1v0ea1 b.68.1.2 (A:245-760) E 9.9 40 0.0029 11.4 2.0 32 300-331 449-480 (516) 7 d1g6ea_ b.11.1.6 (A:) Antifung 9.3 42 0.0031 11.3 3.9 44 213-304 30-74 (87) 8 d2cvla1 d.79.1.1 (A:1-124) Put 8.5 45 0.0033 11.1 1.1 19 309-327 102-120 (124) 9 d2qamc2 b.40.4.5 (C:61-124) N- 7.8 45 0.0033 11.1 0.3 45 290-342 17-61 (64) 10 d1sqda2 d.32.1.3 (A:181-410) 4 7.6 48 0.0035 11.0 0.4 38 156-194 109-146 (230) No 1 >d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]} Probab=98.89 E-value=2.1e-07 Score=58.17 Aligned_cols=245 Identities=11% Similarity=0.014 Sum_probs=143.2 Q ss_pred HHHHHCCEECCCCCCCEEEEECCCC--EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2430100230312674068713462--35533258987432456876269998234431122126888874100689999 Q gi|254781210|r 28 SKLRPTVTEQATEGEASALVEVFKP--TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYA 105 (343) Q Consensus 28 s~L~~~V~~~t~~~Gks~~f~~~G~--~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~d~rs~y~ 105 (343) +.+|++++..+.. +.+..+|+... ..|....++ +..|..+...+.+.....-+..-..|.+.-. +-..+..+... T Consensus 29 ~~vr~~~~~~~~~-~~~~~~~~~~~~~~~a~~v~Eg-~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell-~ds~~~~~~v~ 105 (280) T d2ft1a1 29 LTIRDLLAQGRTS-SNALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQASRQVM-DDAPMLQSYIN 105 (280) T ss_dssp CCSGGGSEEEECC-SSEEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEEEHHHH-HHSTTHHHHHH T ss_pred HHHHHHHCEEEEC-CCCEEEEEEECCCCCEEEECCC-CCCCCCCCCCCCCCCCCEEEEEEECCCHHHH-HHHHHHHHHHH T ss_conf 4478660537727-9978988885476866896268-8777565443434344589999953699998-41178999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC Q ss_conf 99999987768899999862014556666654456666402302357764222899999999860238897546079976 Q gi|254781210|r 106 SLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLI 185 (343) Q Consensus 106 ~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~ 185 (343) +.++.+++++.|+.++. |....... ....................+.+.++.+...++.++.+.. .|+ + T Consensus 106 ~~l~~~~a~~~d~a~l~---G~g~~~~~----~gl~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~-~ 174 (280) T d2ft1a1 106 NRLMYGLALKEEGQLLN---GDGTGDNL----EGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS---GIV-L 174 (280) T ss_dssp HHHHHHHHHHHHHHHHS---CCSSTTSC----CCHHHHSEECCGGGCCSSCCHHHHHHHHHHHHHTTSCCCC---EEE-E T ss_pred HHHHHHHHHHHHHHHHC---CCCCCCCC----CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC---EEE-E T ss_conf 99999999986566530---55667776----6521014444322344654321458999987765135575---279-7 Q ss_pred CHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999875067101000001343113670122743589970777876666544433333456556677766666666545 Q gi|254781210|r 186 PSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFE 265 (343) Q Consensus 186 ~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343) +|..|..|.....-.. .|.- .....|.-++++|++++.++.+|..... - T Consensus 175 ~~~~~~~l~~lkd~~G-~~l~-~~~~~~~~~~l~G~Pv~~s~~~~~~~~~-----------------------------~ 223 (280) T d2ft1a1 175 NPRDWHNIALLKDNEG-RYIF-GGPQAFTSNIMWGLPVVPTKAQAAGTFT-----------------------------V 223 (280) T ss_dssp CHHHHHHHHTCBCTTS-CBSS-STTTCCCCSEETTEEEEECTTSCTTEEE-----------------------------E T ss_pred CHHHHHHHHHCCCCCC-CEEC-CCCCCCCCCCCCCEEEEEECCCCCCEEE-----------------------------E T ss_conf 2768877761116788-6502-5644577750477479972798752489-----------------------------9 Q ss_pred CCCCCEEEEEEECCCCEEEEECCCEEEEEECCC-C--CCHHEEEHEECCCCEEECCCCEEEEEE Q ss_conf 565513799984541034451353156554165-3--203300010002635654152589995 Q gi|254781210|r 266 DTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPG-K--WHAPQITLTSSFGATRIEPDKILGIEI 326 (343) Q Consensus 266 ~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~-k--~~a~~i~~~~s~Ga~~l~~~~vv~I~~ 326 (343) +++ +.+..+....++.+++.+.+. . +.-..+.+.+-+|....+|+++|.... T Consensus 224 gdf---------~~~~~~~~r~~~~v~~~~~~~~~f~~~~v~~ra~~r~~~~v~~~~Afv~g~~ 278 (280) T d2ft1a1 224 GGF---------DMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTF 278 (280) T ss_dssp ECH---------HHHEEEEESEEEEEEEESSSTTHHHHTEEEEEEEEEECEEESCGGGEEEEEC T ss_pred EEH---------HHEEEEEEECCCEEEEEECCCCHHHCCEEEEEEEEEEEEEEECCCEEEEEEE T ss_conf 603---------7728999913518998414511644790999999998558807881999996 No 2 >d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]} Probab=22.60 E-value=8.7 Score=15.17 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=25.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHC Q ss_conf 228999999998602388975460799769999987506 Q gi|254781210|r 157 TFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFA 195 (343) Q Consensus 157 lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~ 195 (343) +..+-|.++.+.|.+++|. ++-.||..||++|. T Consensus 90 f~vdDI~aav~~L~~~Gv~------fL~~pp~~Yy~~l~ 122 (203) T d1cjxa2 90 FLTDDLVKTWDALKKIGMR------FMTAPPDTYYEMLE 122 (203) T ss_dssp EEESCHHHHHHHHHHTTCC------BCCCCCHHHHHTHH T ss_pred EEECCHHHHHHHHHHCCCC------CCCCCHHHHHHHHH T ss_conf 9818999999999856775------44573066889998 No 3 >d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493 orthologue) {Anabaena variabilis [TaxId: 1172]} Probab=20.17 E-value=19 Score=13.25 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHHHCCEE Q ss_conf 778999998711243010023 Q gi|254781210|r 16 KKHVELALQETKSKLRPTVTE 36 (343) Q Consensus 16 ~~~v~~a~qqk~s~L~~~V~~ 36 (343) ..++..+...+...|++-+.. T Consensus 15 ~~~~~~~~~~~~~~l~~~I~i 35 (102) T d2ga1a1 15 PEELVDQALNYVQMLQNPIQI 35 (102) T ss_dssp CHHHHHHHHHHHHHHHCSEEC T ss_pred HHHHHHHHHHHHHHHHCCEEE T ss_conf 799997688999997688251 No 4 >d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]} Probab=14.40 E-value=28 Score=12.26 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=7.0 Q ss_pred EEEEEEEEEEEECCCC Q ss_conf 1227435899707778 Q gi|254781210|r 215 IEAFAGVWFINMEKVP 230 (343) Q Consensus 215 I~~~~G~~~i~s~~lp 230 (343) +.++-=|++|.-.++| T Consensus 41 l~~v~lfDvy~g~~~~ 56 (104) T d1jjcb4 41 LESLALFDLYQGPPLP 56 (104) T ss_dssp EEEEEEEEEECSTTSC T ss_pred CCCCEEEEEECCCCCC T ss_conf 2553587688179989 No 5 >d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]} Probab=13.04 E-value=20 Score=13.10 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=26.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCC Q ss_conf 22289999999986023889754607997699999875067 Q gi|254781210|r 156 KTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFAL 196 (343) Q Consensus 156 ~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~ 196 (343) ++.++-|.++.+.|.++.+-. | -.++..||..||+++.. T Consensus 96 Af~vdDI~~av~~L~arGv~~-G-~~fl~~p~~~Yy~~~~~ 134 (224) T d1sp8a2 96 ALASDDVLRTLREMQARSAMG-G-FEFMAPPTSDYYDGVRR 134 (224) T ss_dssp EEEETTHHHHHHHHHTSGGGT-S-CCBCCCCCHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHCCCCC-C-CEECCCCHHHHHHHHHH T ss_conf 997188999999998603233-4-11235612455556876 No 6 >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Probab=9.93 E-value=40 Score=11.43 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=18.0 Q ss_pred CCHHEEEHEECCCCEEECCCCEEEEEECHHHH Q ss_conf 20330001000263565415258999541332 Q gi|254781210|r 300 WHAPQITLTSSFGATRIEPDKILGIEISKDSL 331 (343) Q Consensus 300 ~~a~~i~~~~s~Ga~~l~~~~vv~I~~~e~~~ 331 (343) +++..|....-.|.+.+.+.-+.-|---||-+ T Consensus 449 yqg~ivns~vgvgsv~vkd~~lyyifgged~f 480 (516) T d1v0ea1 449 YQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF 480 (516) T ss_dssp BCCSSSCCCSEEEEEEEETTEEEEEEEECCSC T ss_pred HCCCEEECCCCCEEEEEECCEEEEEECCCCCC T ss_conf 11750211433015897578799995574347 No 7 >d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]} Probab=9.26 E-value=42 Score=11.28 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=29.4 Q ss_pred CCE-EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEE Q ss_conf 701-2274358997077787666654443333345655667776666666654556551379998454103445135315 Q gi|254781210|r 213 GKI-EAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDV 291 (343) Q Consensus 213 G~I-~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ 291 (343) |.. ..++|++|+.|.| +.+.+-|++. +.|++. T Consensus 30 g~mpvaiygvnwiesgn-----------------------------------------nvvt~~fqrn------ls~prl 62 (87) T d1g6ea_ 30 GTMPVAIYGVNWVESGN-----------------------------------------NVVTLQFQRN------LSDPRL 62 (87) T ss_dssp CEECCCCCSEEEEEECS-----------------------------------------SCEEEEEESC------TTTTCE T ss_pred CCCEEEEEEEEEEEECC-----------------------------------------CEEEEEEECC------CCCCCE T ss_conf 87407999745886089-----------------------------------------5899996305------788521 Q ss_pred EEEECCCCCCHHE Q ss_conf 6554165320330 Q gi|254781210|r 292 QHSKDPGKWHAPQ 304 (343) Q Consensus 292 ei~~~~~k~~a~~ 304 (343) |.--. +||-+|+ T Consensus 63 etitl-~kw~sw~ 74 (87) T d1g6ea_ 63 ETITL-QKWGSWN 74 (87) T ss_dssp EEEEE-CTTEEEC T ss_pred EEEEH-HHHCCCC T ss_conf 58985-6726899 No 8 >d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]} Probab=8.52 E-value=45 Score=11.10 Aligned_cols=19 Identities=0% Similarity=0.041 Sum_probs=12.1 Q ss_pred ECCCCEEECCCCEEEEEEC Q ss_conf 0026356541525899954 Q gi|254781210|r 309 SSFGATRIEPDKILGIEIS 327 (343) Q Consensus 309 ~s~Ga~~l~~~~vv~I~~~ 327 (343) ...|+..|.|+..|||+|. T Consensus 102 t~v~v~~L~~~~lVEIe~i 120 (124) T d2cvla1 102 ATVAVKALPRGVRVEVACV 120 (124) T ss_dssp EEEECSCCGGGCSEEEEEE T ss_pred EEEEECCCCCCCEEEEEEE T ss_conf 7999576799999999999 No 9 >d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Probab=7.85 E-value=45 Score=11.11 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=29.6 Q ss_pred EEEEEECCCCCCHHEEEHEECCCCEEECCCCEEEEEECHHHHCCCEECCCCCC Q ss_conf 15655416532033000100026356541525899954133225300255445 Q gi|254781210|r 290 DVQHSKDPGKWHAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKA 342 (343) Q Consensus 290 ~~ei~~~~~k~~a~~i~~~~s~Ga~~l~~~~vv~I~~~e~~~~~~~~~~~~~~ 342 (343) -.+++|+|.|+ +......+.=|-- --|-|.|+.-.|--+..|.+| T Consensus 17 V~~IEYDPnRs-A~IALv~y~dG~k-------~Yilap~gl~vGd~I~sg~~a 61 (64) T d2qamc2 17 VERLEYDPNRS-ANIALVLYKDGER-------RYILAPKGLKAGDQIQSGVDA 61 (64) T ss_dssp CCCCCCCSSSS-SCCBCCCBTTSCC-------CCBCCBSSCCTTCEECCSSSC T ss_pred EEEEEECCCCC-CEEEEEECCCCCE-------EEEECCCCCCCCCEEEECCCC T ss_conf 99989679998-1589999479969-------999856999899999879898 No 10 >d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=7.61 E-value=48 Score=10.96 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=22.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 222899999999860238897546079976999998750 Q gi|254781210|r 156 KTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLF 194 (343) Q Consensus 156 ~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll 194 (343) ++..+-|.++.+.|+++.+- .|-+.+..+|+.+|.+|- T Consensus 109 Af~tdDI~aav~~LrarG~~-~G~~f~~~~p~~YY~~l~ 146 (230) T d1sqda2 109 ALMSEDIFRTLREMRKRSSI-GGFDFMPSPPPTYYQNLK 146 (230) T ss_dssp EEEESCHHHHHHHHHHHGGG-TSCCBCCCCCHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHH T ss_conf 99808899999999972013-674204689557888898 Done!