RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781210|ref|YP_003065623.1| hypothetical protein
CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)



>gnl|CDD|34627 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
          Length = 1463

 Score = 28.8 bits (64), Expect = 2.0
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 14  EFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIYNATDQD 73
           EF   +    +  +SK R        +   ++L+     T+ H I    P+   +    D
Sbjct: 586 EFVSTLFDDEENIESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFD 645

Query: 74  RRWVGH-------------SQFGWAERIDPFATLDSGINPLLPYASLAT----AAMHRKQ 116
            + V               S+ G+  R   F         L P  S           +  
Sbjct: 646 NQMVLSQLRCCGVLETIRISRAGFPSRW-TFDEFVQRYRILSPSKSWTGEYTWKEDTKNA 704

Query: 117 DEAILKGMLGVNKKGKIGAETEFFSKENILSAVE 150
            ++IL+ ++  + K +IG  T+ F K  +L+A+E
Sbjct: 705 VKSILEELVIDSSKYQIG-NTKVFFKAGVLAALE 737


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,993,134
Number of extensions: 206086
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 248
Effective length of database: 4,210,882
Effective search space: 1044298736
Effective search space used: 1044298736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)