RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781210|ref|YP_003065623.1| hypothetical protein
CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)



>gnl|CDD|116521 pfam07909, DUF1663, Protein of unknown function (DUF1663).  The
           members of this family are hypothetical proteins
           expressed by Trypanosoma cruzi, a eukaryotic parasite
           that causes Chagas' disease in humans. This region is
           found as multiple copies per protein.
          Length = 514

 Score = 28.2 bits (61), Expect = 2.9
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 1   MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60
           +  +E  A   I E      L   E +S  R    E+A   E  A + +    E  +  G
Sbjct: 160 LELEEAAAFDEIGEMMFQDRLIQAELRS-ARHEKAEEALAAEEDAAMCILAEEEREDTYG 218

Query: 61  DMPDTIYNATDQDRRWVGHSQFG 83
              D I +    DRR +   +  
Sbjct: 219 LHRDAIDSEEHADRRRIEAGEAA 241


>gnl|CDD|163089 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
           binding subunit.  Members of the protein family are the
           molybdopterin-containing large subunit (or, in,
           eukaryotes, the molybdopterin-binding domain) of
           xanthine dehydrogenase, and enzyme that reduces the
           purine pool by catabolizing xanthine to urate. This
           model is based primarily on bacterial sequences; it does
           not manage to include all eukaryotic xanthine
           dehydrogenases and thereby discriminate them from the
           closely related enzyme aldehyde dehydrogenase.
          Length = 758

 Score = 27.3 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 214 KIEAFAGV-WFINMEKVPG-NDLFPAGTKFPGLIDGKVEY 251
            + A  GV   +    +PG ND+ P     P L DGKVE+
Sbjct: 52  AVRAAPGVVDVLTAADIPGENDISPIIHDDPLLADGKVEF 91


>gnl|CDD|151595 pfam11152, DUF2930, Protein of unknown function (DUF2930).  This
           family of proteins has no known function.
          Length = 196

 Score = 27.2 bits (61), Expect = 6.5
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 4/26 (15%)

Query: 64  DTIYNATDQDRRWVGHSQFGWAERID 89
            +    T  D RW+     GWA+++ 
Sbjct: 175 WSPRCFTRSDERWIE----GWADKLR 196


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,500,558
Number of extensions: 349908
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 8
Length of query: 343
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 249
Effective length of database: 3,963,321
Effective search space: 986866929
Effective search space used: 986866929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)