RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781210|ref|YP_003065623.1| hypothetical protein
CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)



>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase;
           HET: DNA GMP; 2.21A {Enterobacteria phage RB69}
           (A:339-384,A:427-575)
          Length = 195

 Score = 27.6 bits (61), Expect = 2.5
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 243 GLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKA 288
             I+   E P+   +   +          V+P       VF QRK 
Sbjct: 61  DYINAVAERPSDVYSCSPNGMMYYKDRDGVVPTEITK--VFNQRKE 104


>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
           carbohydrate, pyrophosphorylase; 1.95A {Escherichia
           coli} (A:)
          Length = 302

 Score = 27.1 bits (58), Expect = 3.4
 Identities = 4/35 (11%), Positives = 7/35 (20%)

Query: 90  PFATLDSGINPLLPYASLATAAMHRKQDEAILKGM 124
              + D G       A +     H          +
Sbjct: 260 KGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWL 294


>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8
           barrel, riken structural genomics/proteomics initiative,
           RSGI; 2.20A {Pyrococcus horikoshii} (A:430-505)
          Length = 76

 Score = 26.2 bits (58), Expect = 6.0
 Identities = 5/38 (13%), Positives = 14/38 (36%)

Query: 151 GDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLIPSD 188
           G+   + F    +        R + V+ +++  +   D
Sbjct: 20  GEGASRAFDDAKVELSKTGMPRQVKVNGKRLATVRADD 57


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,521,312
Number of extensions: 109965
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 8
Length of query: 343
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 254
Effective length of database: 1,947,404
Effective search space: 494640616
Effective search space used: 494640616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)