Query gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 234 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:01:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781211.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1mqs_A SLY1 protein, SLY1P; S 60.2 3.2 9.4E-05 21.9 0.9 32 65-96 14-45 (79) 2 >3iru_A Phoshonoacetaldehyde h 48.9 8 0.00024 19.3 1.4 66 71-143 1-69 (86) 3 >1lva_A Selenocysteine-specifi 31.1 26 0.00078 15.9 1.8 17 113-129 27-43 (60) 4 >2v9v_A Selenocysteine-specifi 30.6 26 0.00077 16.0 1.7 16 113-128 27-42 (60) 5 >1swv_A Phosphonoacetaldehyde 28.8 23 0.00068 16.3 1.2 65 72-143 1-68 (84) 6 >3bi8_A Dihydrodipicolinate sy 28.3 36 0.0011 15.0 2.1 43 84-126 13-62 (291) 7 >3d2f_A Heat shock protein hom 25.9 45 0.0013 14.4 2.3 39 54-92 30-70 (220) 8 >3h8m_A Ephrin type-A receptor 25.2 23 0.00068 16.3 0.6 62 43-104 2-65 (90) 9 >2dl0_A SAM and SH3 domain-con 22.5 44 0.0013 14.5 1.6 40 53-92 9-49 (97) 10 >2e8v_A Geranylgeranyl pyropho 19.1 61 0.0018 13.6 2.0 99 81-179 1-113 (146) No 1 >>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:449-527) Probab=60.24 E-value=3.2 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=27.0 Q ss_pred CEECCCHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 20038002014567898999886281578999 Q gi|254781211|r 65 YTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQ 96 (234) Q Consensus 65 ytlscpdyvseaevtahieafkeagvdarvaq 96 (234) |-|+-++-+|++|+...-+|++++|+|-.--+ T Consensus 14 ~yLst~~~ls~~e~~~~e~aL~~~g~D~sal~ 45 (79) T 1mqs_A 14 LYLTSTTGLPKDFVQNVENYFKENDYDINALK 45 (79) T ss_dssp HHHHCSSCCCHHHHHHHHHHHHTTTCCCTHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99862789866899999999986499868999 No 2 >>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:27-112) Probab=48.87 E-value=8 Score=19.29 Aligned_cols=66 Identities=26% Similarity=0.292 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 020145678989998862815789999999---9998368877883113699999998650773023477999997 Q gi|254781211|r 71 DYVSEAEVTAHIEAFKEAGVDARVAQKVVD---KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYF 143 (234) Q Consensus 71 dyvseaevtahieafkeagvdarvaqkvvd---klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryf 143 (234) ||-|-|-|.+-+|+|++.||+.-.++--.. --.||=|.+.+ ++.-+...+.+.|.... |.||-+.| T Consensus 1 DfG~fAPv~aF~eaF~~~Gi~iT~~EaR~PMGl~K~dHIrall~-----~p~V~~~W~~~~g~~~~--e~DV~~iy 69 (86) T 3iru_A 1 DFGSLAPVYAFXELFKQEGIEVTQAEAREPXGTEKSEHIRRXLG-----NSRIANAWLSIKGQASN--EEDIKRLY 69 (86) T ss_dssp STTCCHHHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHTT-----SHHHHHHHHHHHSSCCC--HHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHC-----CCHHHHHHHHHHHCCCC--HHHHHHHH T ss_conf 28740699999999998699999999998848879999999852-----44036799997620266--99999999 No 3 >>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:1-60) Probab=31.13 E-value=26 Score=15.92 Aligned_cols=17 Identities=53% Similarity=0.581 Sum_probs=13.4 Q ss_pred HCCCHHHHHHHHHHHHC Q ss_conf 31136999999986507 Q gi|254781211|r 113 FGASLEEERKLLQTKLG 129 (234) Q Consensus 113 fgasleeerkllqtklg 129 (234) -..||||.|||||.... T Consensus 27 aslsleetrkllqs~aa 43 (60) T 1lva_A 27 ASLSLEETRKLLQSXAA 43 (60) T ss_dssp HTCCHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHH T ss_conf 49999999999999884 No 4 >>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:1-60) Probab=30.64 E-value=26 Score=15.97 Aligned_cols=16 Identities=56% Similarity=0.578 Sum_probs=12.9 Q ss_pred HCCCHHHHHHHHHHHH Q ss_conf 3113699999998650 Q gi|254781211|r 113 FGASLEEERKLLQTKL 128 (234) Q Consensus 113 fgasleeerkllqtkl 128 (234) -..||||.|||||.-. T Consensus 27 aslsleetrkllqsma 42 (60) T 2v9v_A 27 ASLSLEETRKLLQSMA 42 (60) T ss_dssp HTCCHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHH T ss_conf 4949999999999998 No 5 >>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} (A:20-103) Probab=28.77 E-value=23 Score=16.29 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=39.5 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 20145678989998862815789999999---9998368877883113699999998650773023477999997 Q gi|254781211|r 72 YVSEAEVTAHIEAFKEAGVDARVAQKVVD---KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYF 143 (234) Q Consensus 72 yvseaevtahieafkeagvdarvaqkvvd---klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryf 143 (234) |-|-|-|.+-+|+|++.||+.-+++--.. --.||=|.+.+ ++.-+...+.+.|.... |.||-+.| T Consensus 1 fG~fAPv~aFveaF~~~Gi~iT~~EaR~PMGl~K~dHIrall~-----~p~V~~~W~~~~g~~~t--e~DV~~iy 68 (84) T 1swv_A 1 YGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTE-----MPRIASEWNRVFRQLPT--EADIQEMY 68 (84) T ss_dssp TTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHH-----SHHHHHHHHHHHSSCCC--HHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHHCCCCC--HHHHHHHH T ss_conf 8741699999999998699999999998848778999999862-----02446899998564676--88899999 No 6 >>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Probab=28.31 E-value=36 Score=15.04 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=22.9 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCHHHHHHHHHH Q ss_conf 9886281578999999999983688-------778831136999999986 Q gi|254781211|r 84 AFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126 (234) Q Consensus 84 afkeagvdarvaqkvvdklvdhgrk-------igeqfgasleeerkllqt 126 (234) .|.+.++|-....+.++.++++|-. .||.+.-|.+|-+.++.. T Consensus 13 Pf~~d~iD~~~~~~~i~~l~~~Gv~gi~~~g~tGE~~~Ls~~Er~~l~~~ 62 (291) T 3bi8_A 13 PFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62 (291) T ss_dssp CBCSSSBCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHH T ss_conf 86879809999999999999779999998910547203899999999999 No 7 >>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* (A:1-38,A:137-233,A:315-399) Probab=25.89 E-value=45 Score=14.42 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.4 Q ss_pred HCCCCCC--CCCCCEECCCHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 1189999--83212003800201456789899988628157 Q gi|254781211|r 54 EAGEPKP--PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDA 92 (234) Q Consensus 54 eagepkp--piedytlscpdyvseaevtahieafkeagvda 92 (234) +.|+-.- ||.+-.+++|-|.++++-.|-.+|.+.||... T Consensus 30 ~~~~~~~p~~v~~~vitVP~~~t~~qr~a~~~aa~~AG~~~ 70 (220) T 3d2f_A 30 EVSNRSTPSNITDVCIAVPPWYTEEQRYNIADAARIAGLNP 70 (220) T ss_dssp TTSCSSEECCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE T ss_pred CCCCCEECECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE T ss_conf 99990316798759999879899899999999999779980 No 8 >>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} (A:) Probab=25.18 E-value=23 Score=16.29 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=34.6 Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHH-H-HHHHHHHHHHH Q ss_conf 88775544302118999983212003800201456789899988628157-8-99999999998 Q gi|254781211|r 43 RNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDA-R-VAQKVVDKLVD 104 (234) Q Consensus 43 rnpssssssteeagepkppiedytlscpdyvseaevtahieafkeagvda-r-vaqkvvdklvd 104 (234) |+|.+++......-.++|+-.--.-.+.++......-.+++.|.+.|+|. . ++.--.+.|.+ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~w~~~~V~~WL~~~gl~~Y~~~F~~~~i~g~~~L~~l~~~dL~~ 65 (90) T 3h8m_A 2 HHHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMS 65 (90) T ss_dssp -----------------CCCCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHH T ss_conf 7544578898886547999998626299999888589999999984887299997788999978 No 9 >>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=22.48 E-value=44 Score=14.49 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=27.0 Q ss_pred HHCCCCCCCCCCCEE-CCCHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 211899998321200-3800201456789899988628157 Q gi|254781211|r 53 EEAGEPKPPIEDYTL-SCPDYVSEAEVTAHIEAFKEAGVDA 92 (234) Q Consensus 53 eeagepkppiedytl-scpdyvseaevtahieafkeagvda 92 (234) ........|+..++. .+.+++........++.|++.++|. T Consensus 9 ~~~~~~~~~~~~w~~~~V~~WL~~~~l~~y~~~F~~~~i~g 49 (97) T 2dl0_A 9 GLTEICRKPVSPGCISSVSDWLISIGLPMYAGTLSTAGFST 49 (97) T ss_dssp CCCSCCCCCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCS T ss_pred CCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCH T ss_conf 73133039999563879999999887966999999938641 No 10 >>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... (A:195-340) Probab=19.11 E-value=61 Score=13.55 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=59.0 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHHCCCHH Q ss_conf 8999886281578999999999983---688778831136999999986507730---2347---799999753038814 Q gi|254781211|r 81 HIEAFKEAGVDARVAQKVVDKLVDH---GRKIGEQFGASLEEERKLLQTKLGSDY---ETRE---KDIARYFRKEKIPDN 151 (234) Q Consensus 81 hieafkeagvdarvaqkvvdklvdh---grkigeqfgasleeerkllqtklgsdy---etre---kdiaryfrkekipdn 151 (234) ||+++..-|-..-+|-.+.|-+.|- ....|..+|.-|.+-..-+-.-++-.. +.++ .-+..+..+...... T Consensus 1 ~i~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146) T 2e8v_A 1 HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKD 80 (146) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH T ss_conf 25888888752015787501000001446641356553676285539999999964652166999999999745799989 Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHCCCC Q ss_conf 7999998-----632256777999987511211 Q gi|254781211|r 152 DVQSLIS-----AWGFEKTFNFFDRYAQQNKES 179 (234) Q Consensus 152 dvqslis-----awgfektfnffdryaqqnkes 179 (234) ++..++. .-+++++.+....|.++-.+. T Consensus 81 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~a~~~ 113 (146) T 2e8v_A 81 IKLKLIQILEFDTNSLAYTKNFINQLVNMIKND 113 (146) T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf 999999999986259999999999999870447 Done!