Query gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781211.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v64a_ a.21.1.1 (A:) Nucleola 36.3 12 0.00089 15.5 4.1 90 44-156 3-93 (108)
2 d2v9va1 a.4.5.35 (A:377-437) C 30.7 11 0.00076 16.0 1.7 16 113-128 27-42 (61)
3 d2pfxa1 a.152.1.3 (A:1-190) Un 28.5 16 0.0012 14.7 8.0 89 86-174 63-175 (190)
4 d1v63a_ a.21.1.1 (A:) Nucleola 23.5 20 0.0015 14.1 3.3 73 54-145 5-77 (101)
5 d1ayia_ a.28.2.1 (A:) ImmE7 pr 22.8 21 0.0015 14.0 2.9 45 58-112 3-47 (86)
6 d2hkua2 a.121.1.1 (A:88-208) P 16.6 28 0.0021 13.2 3.9 31 96-126 80-110 (121)
7 d1f6va_ a.49.1.1 (A:) C-termin 16.2 5.5 0.0004 17.8 -2.1 24 142-165 7-30 (91)
8 d2a5yb2 a.77.1.3 (B:1-108) Cel 15.5 30 0.0022 13.0 3.3 55 125-181 14-70 (108)
9 d1jcea1 c.55.1.1 (A:4-140) Pro 13.5 34 0.0025 12.6 2.2 36 56-91 86-121 (137)
10 g1avo.1 a.24.8.1 (A:,B:) Prote 12.8 35 0.0026 12.6 1.2 35 110-144 103-137 (200)
No 1
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.25 E-value=12 Score=15.54 Aligned_cols=90 Identities=21% Similarity=0.411 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHCCCC-CCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 877554430211899-9983212003800201456789899988628157899999999998368877883113699999
Q gi|254781211|r 44 NPSSSSSSTEEAGEP-KPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERK 122 (234)
Q Consensus 44 npssssssteeagep-kppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerk 122 (234)
..++......-.|.| |||.--|.|-|-|... .++... .-+..+.||+.+-.--++|+.
T Consensus 3 ~~~~~~~k~~~~~~p~K~P~~ay~lF~~~~r~---------~~~~~~------------~~e~~k~ig~~W~~Ls~~eK~ 61 (108)
T d1v64a_ 3 SGSSGQLKDKFDGRPTKPPPNSYSLYCAELMA---------NMKDVP------------STERMVLCSQQWKLLSQKEKD 61 (108)
T ss_dssp CCSSCCSSCCTTTSCCCCCSSHHHHHHHHHHH---------HCTTSC------------HHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---------HCCCCC------------HHHHHHHHHHHHCCCCHHHHH
T ss_conf 99886556668999887999689999999998---------832788------------999999999988449999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9986507730234779999975303881479999
Q gi|254781211|r 123 LLQTKLGSDYETREKDIARYFRKEKIPDNDVQSL 156 (234)
Q Consensus 123 llqtklgsdyetrekdiaryfrkekipdndvqsl 156 (234)
-.+..--.+-+.-..+++.|. +.+|..+-+.+
T Consensus 62 ~Y~~~a~~~k~~Y~~~~~~y~--~~~~~~~k~~~ 93 (108)
T d1v64a_ 62 AYHKKCDQKKKDYEVELLRFL--ESLPEEEQQRV 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHH
T ss_conf 999999999999999999998--53889899999
No 2
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=30.66 E-value=11 Score=15.97 Aligned_cols=16 Identities=56% Similarity=0.578 Sum_probs=12.9
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 3113699999998650
Q gi|254781211|r 113 FGASLEEERKLLQTKL 128 (234)
Q Consensus 113 fgasleeerkllqtkl 128 (234)
-..||||.|||||.-.
T Consensus 27 aslsleetrkllqsma 42 (61)
T d2v9va1 27 ASLSLEETRKLLQSMA 42 (61)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHH
T ss_conf 6234899999999998
No 3
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=28.52 E-value=16 Score=14.72 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=62.9
Q ss_pred HHCCHHHHHHHHHHH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HCCCHH
Q ss_conf 862815789999999---------999836887788311369999999865077302347799999753-----038814
Q gi|254781211|r 86 KEAGVDARVAQKVVD---------KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYFRK-----EKIPDN 151 (234)
Q Consensus 86 keagvdarvaqkvvd---------klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryfrk-----ekipdn 151 (234)
.+..++.+.-+.+.- -.++|...++.+.|.+-+.-..+....-.+.+.-+++-+.+|-++ .+|.|.
T Consensus 63 ~~~~L~~~~rEli~l~vS~~n~C~YC~~~H~~~~~~~g~~~~~~~~i~~~~~~~~~~~~e~all~~a~~l~~~~~~v~d~ 142 (190)
T d2pfxa1 63 GESQLSKLEREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIEEA 142 (190)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHHGGGCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 01355699999999999998187378998999999806771654557764034214689999999999997376899999
Q ss_pred HHHHHHHH-HHH---------HHHHHHHHHHHH
Q ss_conf 79999986-322---------567779999875
Q gi|254781211|r 152 DVQSLISA-WGF---------EKTFNFFDRYAQ 174 (234)
Q Consensus 152 dvqslisa-wgf---------ektfnffdryaq 174 (234)
+++.|-.+ |.- --.||++.|.+.
T Consensus 143 ~~~~L~~~G~sd~eI~el~~~ia~~~~~nr~~~ 175 (190)
T d2pfxa1 143 DREVLRSHGFNDRDIWDIANVTGFFNMTNRVAS 175 (190)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999879999999999999999999999999
No 4
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.47 E-value=20 Score=14.13 Aligned_cols=73 Identities=12% Similarity=0.264 Sum_probs=51.6
Q ss_pred HCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
Q ss_conf 11899998321200380020145678989998862815789999999999836887788311369999999865077302
Q gi|254781211|r 54 EAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYE 133 (234)
Q Consensus 54 eagepkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerkllqtklgsdye 133 (234)
-.|-||+|.--|-|-|-++.... +..+.+ ..+-.+.||+.+-.--++|+.-......-+.+
T Consensus 5 ~~~p~KrP~~ay~~F~~e~r~~~---------~~~~~~----------~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~ 65 (101)
T d1v63a_ 5 SSGPKKPPMNGYQKFSQELLSNG---------ELNHLP----------LKERMVEIGSRWQRISQSQKEHYKKLAEEQQR 65 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHHHC---------TTTTSC----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---------HHCCCC----------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99978899989999999999997---------706989----------99999999999861999999999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 347799999753
Q gi|254781211|r 134 TREKDIARYFRK 145 (234)
Q Consensus 134 trekdiaryfrk 145 (234)
...++++.|-..
T Consensus 66 ~y~~e~~~y~~~ 77 (101)
T d1v63a_ 66 QYKVHLDLWVKS 77 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999842
No 5
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=22.82 E-value=21 Score=14.05 Aligned_cols=45 Identities=38% Similarity=0.511 Sum_probs=29.3
Q ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998321200380020145678989998862815789999999999836887788
Q gi|254781211|r 58 PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQ 112 (234)
Q Consensus 58 pkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeq 112 (234)
-|--|+||| |+|..+-+..|-.+.... ..+..|.||+|=.+|-|.
T Consensus 3 lK~~isDYT--------E~EFl~fl~~i~~~~~~~--~e~~~d~l~~hF~~iteH 47 (86)
T d1ayia_ 3 LKNSISDYT--------EAEFVQLLKEIEKENVAA--TDDVLDVLLEHFVKITEH 47 (86)
T ss_dssp CCSSGGGCC--------HHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHCC--------HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHCC
T ss_conf 212141427--------999999999999656885--088999999999999708
No 6
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=16.56 E-value=28 Score=13.17 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999983688778831136999999986
Q gi|254781211|r 96 QKVVDKLVDHGRKIGEQFGASLEEERKLLQT 126 (234)
Q Consensus 96 qkvvdklvdhgrkigeqfgasleeerkllqt 126 (234)
--++--+|-.+-..|+.||-||||.-..+-+
T Consensus 80 WSaafG~Vlq~~a~g~sfgysle~avavif~ 110 (121)
T d2hkua2 80 WSAIFGLVIQKTATGESFGYSLEEAVAVIFA 110 (121)
T ss_dssp HHHHHHHHHHHHHTTSCTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999999998442132004439999999997
No 7
>d1f6va_ a.49.1.1 (A:) C-terminal domain of B transposition protein {Bacteriophage mu [TaxId: 10677]}
Probab=16.21 E-value=5.5 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=17.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 975303881479999986322567
Q gi|254781211|r 142 YFRKEKIPDNDVQSLISAWGFEKT 165 (234)
Q Consensus 142 yfrkekipdndvqslisawgfekt 165 (234)
-++-.|--.+||++++.|||.+-.
T Consensus 7 r~~i~k~kk~Di~Aia~AW~v~d~ 30 (91)
T d1f6va_ 7 RTAINKTKKADVKAIADAWQINGE 30 (91)
T ss_dssp TTCCSSCSGGGTTHHHHSSTTSSS
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCH
T ss_conf 264048979899999999589988
No 8
>d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.51 E-value=30 Score=13.00 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=43.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 865077302347799999753038814799999863--225677799998751121123
Q gi|254781211|r 125 QTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAW--GFEKTFNFFDRYAQQNKESST 181 (234)
Q Consensus 125 qtklgsdyetrekdiaryfrkekipdndvqslisaw--gfektfnffdryaqqnkesst 181 (234)
.+.|-.|+|.| |.-.|.-.|+|-..|-|.|||.. ..+...||...|-.|..+-..
T Consensus 14 ~~~LiqDFEPR--DAl~yl~~e~IFTeD~selI~~M~~R~~Ri~nFlR~YRrqAs~L~P 70 (108)
T d2a5yb2 14 HTRLIHDFEPR--DALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGP 70 (108)
T ss_dssp HHHHHHHCCGG--GGHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCSSSHH
T ss_pred HHHHHHCCCCC--CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998716832--2210540351422458999998169999999999999987765517
No 9
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=13.45 E-value=34 Score=12.64 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 899998321200380020145678989998862815
Q gi|254781211|r 56 GEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 (234)
Q Consensus 56 gepkppiedytlscpdyvseaevtahieafkeagvd 91 (234)
..-.-++.+..+++|-|.++.+--+-.+|.+.||.+
T Consensus 86 ~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~ 121 (137)
T d1jcea1 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGAS 121 (137)
T ss_dssp TSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCS
T ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 523763221589863164789999999999986998
No 10
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.83 E-value=35 Score=12.56 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=22.0
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 78831136999999986507730234779999975
Q gi|254781211|r 110 GEQFGASLEEERKLLQTKLGSDYETREKDIARYFR 144 (234)
Q Consensus 110 geqfgasleeerkllqtklgsdyetrekdiaryfr 144 (234)
|..||.+..|+---+.+..-+.....-..|.+||.
T Consensus 103 GNNFGV~VQe~vl~~l~~ve~~a~~~~~~i~kY~~ 137 (200)
T g1avo.1 103 GNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFS 137 (200)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87420999999999999999999999999999999
Done!