RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781211|ref|YP_003065624.1| hypothetical protein
CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
         (234 letters)



>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase;
           HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:1-184)
          Length = 184

 Score = 29.8 bits (66), Expect = 0.28
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 159 AWGFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEA 218
                 + NF      QN E+S     + +  +Q     ++ + +     +  +     A
Sbjct: 117 ESLVVSSGNFTGPGMSQNIEAS---LLLDNNTTQSMGFSWNDMISEMLNQNWHIHNMTNA 173

Query: 219 TKTLRQWAEK 228
           T     W   
Sbjct: 174 TDASPGWNLL 183


>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, joint center for structural genomics, JCSG;
           1.50A {Cytophaga hutchinsonii atcc 33406} (A:178-394)
          Length = 217

 Score = 29.8 bits (66), Expect = 0.33
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 73  VSEAEVTAHIEAFKEAGVDARVAQKVVD-----KLVDHGRKIGE 111
              A     I   K+  ++A++  +V       +L   G +  E
Sbjct: 170 TDAAHAEGXIAIAKKFNIEAKIIGRVEAPVAGKRLTITGPQGTE 213


>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid
           biosynthesis, cytoplasm, diaminopimelate biosynthesis,
           lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium
           botulinum} PDB: 3ird_A* (A:)
          Length = 291

 Score = 29.4 bits (65), Expect = 0.42
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%)

Query: 78  VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
             A I  F   GVD     ++++  +             GE    +  E ++ ++ 
Sbjct: 7   GVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62


>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
          endocytosis/exocytosis complex; 3.00A {Saccharomyces
          cerevisiae} (A:449-527)
          Length = 79

 Score = 28.9 bits (65), Expect = 0.63
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 65 YTLSCPDYVSEAEVTAHIEAFKEAGVD 91
            L+    + +  V      FKE   D
Sbjct: 14 LYLTSTTGLPKDFVQNVENYFKENDYD 40


>3bhn_A THIJ/PFPI domain protein; YP_001094981.1, DJ-1 like
          protein, DJ-1/PFPI family, structural genomics, joint
          center for structural genomics; HET: MSE; 1.76A
          {Shewanella loihica pv-4} (A:)
          Length = 236

 Score = 28.6 bits (63), Expect = 0.82
 Identities = 2/25 (8%), Positives = 6/25 (24%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
          D  ++ +     +          V 
Sbjct: 29 DDFTDVDFFLXNDLLGRTSDSWTVR 53


>3lkd_A Type I restriction-modification system methyltransferase
           subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural
           genomics, PSI-2; 2.25A {Streptococcus thermophilus}
           (A:25-170)
          Length = 146

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 13/120 (10%), Positives = 40/120 (33%), Gaps = 4/120 (3%)

Query: 118 EEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGF--EKTFNFFDRYAQQ 175
                    +     +       +Y+  E+  ++ +  +     +       F     + 
Sbjct: 25  LFFVAETXEEETESLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERV 84

Query: 176 NKESSTGDTFVRS-EGSQEADRDFDKVFNTPDFGSRVLSG-DKEATKTLRQWAEKQATLN 233
           N  S   +   +     +++D  ++ +F   D  S+ L    ++  +T+    ++ A L+
Sbjct: 85  NDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVXKELAVLD 144


>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid
           biosynthesis, cytoplasm, diaminopimelate biosynthesis,
           lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
           (A:1-243)
          Length = 243

 Score = 27.8 bits (61), Expect = 1.1
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 78  VTAHIEAFKEAGVDARVAQKVVDKLVDHG-------RKIGEQFGASLEEERKLLQT 126
           + A I  F    VD +    +VD  + HG          GE    + EE ++++  
Sbjct: 6   LIAMITPFINGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVAL 61


>1vhq_A Enhancing lycopene biosynthesis protein 2; structural
           genomics, unknown function; 1.65A {Escherichia coli}
           (A:)
          Length = 232

 Score = 28.1 bits (61), Expect = 1.2
 Identities = 10/74 (13%), Positives = 18/74 (24%)

Query: 70  PDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLG 129
            D     E    + A   +G  A        ++       GE    +     +  +   G
Sbjct: 19  YDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVLIEAARITRG 78

Query: 130 SDYETREKDIARYF 143
                 + D A   
Sbjct: 79  EIRPLAQADAAELD 92


>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
           structural genomics, protein structure initiative,
           hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
           aeruginosa} (A:1-35,A:145-352)
          Length = 243

 Score = 28.0 bits (62), Expect = 1.3
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%)

Query: 157 ISAWGFEKTFNFFDRYAQQNKESSTG---DTFVRSEGSQEADRDFDKVFNTPDFGSRVLS 213
           +     +      D + ++ +        D       +    RDFD  F     G R  S
Sbjct: 126 LGPRLIDSQSAALDCWVREYRGLLGIALTDCI----TTDAFLRDFDLYFAKLFDGLRHDS 181

Query: 214 GD-KEATKTLRQWAEK 228
           GD     +       K
Sbjct: 182 GDPLLWAEKTIAHYLK 197


>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural
          genomics, structural genomics consortium, SGC,
          alternative splicing, ATP-binding; 2.10A {Homo sapiens}
          (A:)
          Length = 90

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 43 RNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91
           +    SS  E       P      S  +++   ++  + + F  AG +
Sbjct: 2  HHHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYN 50


>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
          apoptosis, ATP-binding, cytoplasm, endoplasmic
          reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
          {Homo sapiens} PDB: 3hdm_A* 3hdn_A* (A:1-121)
          Length = 121

 Score = 27.1 bits (59), Expect = 2.3
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 29 PPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTL 67
           P + E + ++P      S   +   +  P     D+  
Sbjct: 4  QPQEPELMNANPAPPPAPSQQINLGPSSNPHAKPSDFHF 42


>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing,
          phosphorylation, rRNA processing, mRNA splicing, mRNA
          transport; HET: ANP; 2.21A {Homo sapiens} (A:1-244)
          Length = 244

 Score = 26.7 bits (57), Expect = 2.5
 Identities = 4/55 (7%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 44 NPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKV 98
            ++ ++S           +   +        +E       F   G+   + + +
Sbjct: 2  TTATMATSGSARKRLLKEEDMTKVE----FETSEEVDVTPTFDTMGLREDLLRGI 52


>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
           superfamily, hydrolase, stress response; 2.15A
           {Deinococcus radiodurans} (A:)
          Length = 190

 Score = 26.8 bits (58), Expect = 2.8
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 71  DYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFG 114
           D V E E+T+   A + AG    +      ++      I  Q  
Sbjct: 18  DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEK 61


>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and
          ferritin-like domains; YP_324989.1, structural
          genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc
          29413} (A:1-206)
          Length = 206

 Score = 26.7 bits (58), Expect = 3.0
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
            V + E        K+AG +  V 
Sbjct: 19 QAVEDTEFIIPCNGLKQAGFEVVVL 43


>1sy7_A Catalase 1; heme oxidation, singlet oxygen,
          oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa}
          (A:532-715)
          Length = 184

 Score = 26.4 bits (57), Expect = 3.3
 Identities = 4/25 (16%), Positives = 4/25 (16%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
          D        A   A         V 
Sbjct: 12 DGYDNVAYDAAYAAISANQAIPLVI 36


>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis,
           amino- acid biosynthesis, cytoplasm, diaminopimelate
           biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB:
           3di1_A 3di0_A (A:1-229)
          Length = 229

 Score = 26.5 bits (58), Expect = 3.4
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 78  VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
             A    F    V+    +  V+ L+++  +         E    + +E+  +L+T
Sbjct: 8   GVALTTPFTNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKT 63


>3cne_A Putative protease I; structural genomics, PSI-2, MCSG,
          protein structure initiative, midwest center for
          structural genomics; HET: FMN; 1.99A {Bacteroides
          thetaiotaomicron vpi-5482} (A:)
          Length = 175

 Score = 26.3 bits (57), Expect = 3.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
          + V+   +  ++EAF E G+  +V 
Sbjct: 11 NPVNGCGLFQYLEAFFENGISYKVF 35


>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange
          factor, protein folding, acetylation, ATP-binding,
          calmodulin-binding, chaperone, cytoplasm; HET: ATP;
          2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A*
          2qxl_A* (A:1-38,A:137-233,A:315-399)
          Length = 220

 Score = 26.1 bits (57), Expect = 3.9
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 61 PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91
           I D  ++ P + +E +     +A + AG++
Sbjct: 39 NITDVCIAVPPWYTEEQRYNIADAARIAGLN 69


>2cvx_A Ribonucleoside-diphosphate reductase large chain 1;
           eukaryotic, ribonucleotide reductase, DNTP regulation,
           oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces
           cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
           1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A*
           (A:167-616,A:689-888)
          Length = 650

 Score = 26.0 bits (56), Expect = 4.3
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 9   TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEP 58
                 P V    +++    P   +E  + D       + +    EA E 
Sbjct: 598 ESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647



 Score = 26.0 bits (56), Expect = 5.0
 Identities = 8/61 (13%), Positives = 15/61 (24%)

Query: 9   TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLS 68
           T   +   V E +      P P+K E   +       +       +         +    
Sbjct: 588 TKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647

Query: 69  C 69
           C
Sbjct: 648 C 648


>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent
           acyl-COA synthase, biotin biosynthesis,
           8-amino-7-ketopelargonate synthase; 1.65A {Escherichia
           coli} (A:23-76,A:264-384)
          Length = 175

 Score = 26.0 bits (57), Expect = 4.4
 Identities = 3/23 (13%), Positives = 7/23 (30%)

Query: 67  LSCPDYVSEAEVTAHIEAFKEAG 89
           L+        ++   +E     G
Sbjct: 153 LTLTAAHEMQDIDRLLEVLHGNG 175


>1g2i_A Protease I; intracellular protease, ATP-independent
          intracellular protease, catalytical triad, PFPI,
          cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus
          horikoshii} (A:)
          Length = 166

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
          +   + E+       KE G +  +A
Sbjct: 9  NEFEDVELIYPYHRLKEEGHEVYIA 33


>3iru_A Phoshonoacetaldehyde hydolase like protein;
          phosphonoacetaldehyde hydrolase like protein,
          structural genomics, PSI-2; 2.30A {Oleispira
          antarctica} (A:27-112)
          Length = 86

 Score = 25.5 bits (56), Expect = 6.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQ 96
          D+ S A V A  E FK+ G++   A+
Sbjct: 1  DFGSLAPVYAFXELFKQEGIEVTQAE 26


>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase,
           fatty acid synthesis, acetylation, cytoplasm, fatty acid
           biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
           2jfk_A* 2jfd_A (A:617-685,A:744-752)
          Length = 78

 Score = 25.5 bits (56), Expect = 7.2
 Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 2/29 (6%)

Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229
             N+    +  +SG +       +   K+
Sbjct: 28  CHNSK--DTVTISGPQAPVFEFVEQLRKE 54


>2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase;
          HET: NAG HDD; 1.71A {Penicillium janthinellum}
          (A:512-688)
          Length = 177

 Score = 25.1 bits (54), Expect = 7.9
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%)

Query: 44 NPSSSSSSTEEAGEPKPPIEDYT----LSCPDYVSEAEVTAHIEAFKEAGVDARVA 95
          N ++   +    GE    ++        S     S A+      A    GVD  V 
Sbjct: 1  NTTAHIGAF---GEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV 53


>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
          {Escherichia coli} (A:)
          Length = 291

 Score = 24.9 bits (53), Expect = 8.8
 Identities = 5/27 (18%), Positives = 7/27 (25%)

Query: 69 CPDYVSEAEVTAHIEAFKEAGVDARVA 95
                  E    +     AG +  VA
Sbjct: 69 FSTGNHPIETLLPLYHLHAAGFEFEVA 95


>2vz8_A Fatty acid synthase; transferase, phosphopantetheine,
           multienzyme, megasynthase, fatty acid synthesis; 3.2A
           {Sus scrofa} PDB: 2vz9_A* (A:616-683,A:742-750)
          Length = 77

 Score = 25.1 bits (55), Expect = 9.7
 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229
             N+    +  +SG + A     Q  +++
Sbjct: 27  CHNSK--DTVTISGPQAAMSEFLQQLKRE 53


>1f6v_A DNA transposition protein; MU phage, recombination, ATPase,
           DNA binding, high salt, solution structure, DNA binding
           protein; HET: DNA; NMR {Enterobacteria phage MU} (A:)
          Length = 91

 Score = 24.8 bits (54), Expect = 9.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 139 IARYFRKEKIPDNDVQSLISAWGFE 163
           IA+     K    DV+++  AW   
Sbjct: 4   IAKRTAINKTKKADVKAIADAWQIN 28


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.308    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,749,669
Number of extensions: 77583
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 46
Length of query: 234
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 148
Effective length of database: 2,048,819
Effective search space: 303225212
Effective search space used: 303225212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.5 bits)