RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62] (234 letters) >2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:1-184) Length = 184 Score = 29.8 bits (66), Expect = 0.28 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 159 AWGFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEA 218 + NF QN E+S + + +Q ++ + + + + A Sbjct: 117 ESLVVSSGNFTGPGMSQNIEAS---LLLDNNTTQSMGFSWNDMISEMLNQNWHIHNMTNA 173 Query: 219 TKTLRQWAEK 228 T W Sbjct: 174 TDASPGWNLL 183 >3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} (A:178-394) Length = 217 Score = 29.8 bits (66), Expect = 0.33 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%) Query: 73 VSEAEVTAHIEAFKEAGVDARVAQKVVD-----KLVDHGRKIGE 111 A I K+ ++A++ +V +L G + E Sbjct: 170 TDAAHAEGXIAIAKKFNIEAKIIGRVEAPVAGKRLTITGPQGTE 213 >3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Length = 291 Score = 29.4 bits (65), Expect = 0.42 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%) Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126 A I F GVD ++++ + GE + E ++ ++ Sbjct: 7 GVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62 >1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:449-527) Length = 79 Score = 28.9 bits (65), Expect = 0.63 Identities = 6/27 (22%), Positives = 9/27 (33%) Query: 65 YTLSCPDYVSEAEVTAHIEAFKEAGVD 91 L+ + + V FKE D Sbjct: 14 LYLTSTTGLPKDFVQNVENYFKENDYD 40 >3bhn_A THIJ/PFPI domain protein; YP_001094981.1, DJ-1 like protein, DJ-1/PFPI family, structural genomics, joint center for structural genomics; HET: MSE; 1.76A {Shewanella loihica pv-4} (A:) Length = 236 Score = 28.6 bits (63), Expect = 0.82 Identities = 2/25 (8%), Positives = 6/25 (24%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 D ++ + + V Sbjct: 29 DDFTDVDFFLXNDLLGRTSDSWTVR 53 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} (A:25-170) Length = 146 Score = 28.0 bits (62), Expect = 1.1 Identities = 13/120 (10%), Positives = 40/120 (33%), Gaps = 4/120 (3%) Query: 118 EEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGF--EKTFNFFDRYAQQ 175 + + +Y+ E+ ++ + + + F + Sbjct: 25 LFFVAETXEEETESLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERV 84 Query: 176 NKESSTGDTFVRS-EGSQEADRDFDKVFNTPDFGSRVLSG-DKEATKTLRQWAEKQATLN 233 N S + + +++D ++ +F D S+ L ++ +T+ ++ A L+ Sbjct: 85 NDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVXKELAVLD 144 >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243) Length = 243 Score = 27.8 bits (61), Expect = 1.1 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHG-------RKIGEQFGASLEEERKLLQT 126 + A I F VD + +VD + HG GE + EE ++++ Sbjct: 6 LIAMITPFINGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVAL 61 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} (A:) Length = 232 Score = 28.1 bits (61), Expect = 1.2 Identities = 10/74 (13%), Positives = 18/74 (24%) Query: 70 PDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLG 129 D E + A +G A ++ GE + + + G Sbjct: 19 YDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVLIEAARITRG 78 Query: 130 SDYETREKDIARYF 143 + D A Sbjct: 79 EIRPLAQADAAELD 92 >1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} (A:1-35,A:145-352) Length = 243 Score = 28.0 bits (62), Expect = 1.3 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%) Query: 157 ISAWGFEKTFNFFDRYAQQNKESSTG---DTFVRSEGSQEADRDFDKVFNTPDFGSRVLS 213 + + D + ++ + D + RDFD F G R S Sbjct: 126 LGPRLIDSQSAALDCWVREYRGLLGIALTDCI----TTDAFLRDFDLYFAKLFDGLRHDS 181 Query: 214 GD-KEATKTLRQWAEK 228 GD + K Sbjct: 182 GDPLLWAEKTIAHYLK 197 >3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} (A:) Length = 90 Score = 27.2 bits (60), Expect = 1.9 Identities = 8/49 (16%), Positives = 17/49 (34%) Query: 43 RNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 + SS E P S +++ ++ + + F AG + Sbjct: 2 HHHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYN 50 >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* (A:1-121) Length = 121 Score = 27.1 bits (59), Expect = 2.3 Identities = 6/39 (15%), Positives = 13/39 (33%) Query: 29 PPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTL 67 P + E + ++P S + + P D+ Sbjct: 4 QPQEPELMNANPAPPPAPSQQINLGPSSNPHAKPSDFHF 42 >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} (A:1-244) Length = 244 Score = 26.7 bits (57), Expect = 2.5 Identities = 4/55 (7%), Positives = 15/55 (27%), Gaps = 4/55 (7%) Query: 44 NPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKV 98 ++ ++S + + +E F G+ + + + Sbjct: 2 TTATMATSGSARKRLLKEEDMTKVE----FETSEEVDVTPTFDTMGLREDLLRGI 52 >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans} (A:) Length = 190 Score = 26.8 bits (58), Expect = 2.8 Identities = 10/44 (22%), Positives = 16/44 (36%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFG 114 D V E E+T+ A + AG + ++ I Q Sbjct: 18 DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEK 61 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:1-206) Length = 206 Score = 26.7 bits (58), Expect = 3.0 Identities = 6/25 (24%), Positives = 9/25 (36%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 V + E K+AG + V Sbjct: 19 QAVEDTEFIIPCNGLKQAGFEVVVL 43 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} (A:532-715) Length = 184 Score = 26.4 bits (57), Expect = 3.3 Identities = 4/25 (16%), Positives = 4/25 (16%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 D A A V Sbjct: 12 DGYDNVAYDAAYAAISANQAIPLVI 36 >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229) Length = 229 Score = 26.5 bits (58), Expect = 3.4 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126 A F V+ + V+ L+++ + E + +E+ +L+T Sbjct: 8 GVALTTPFTNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKT 63 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} (A:) Length = 175 Score = 26.3 bits (57), Expect = 3.9 Identities = 7/25 (28%), Positives = 14/25 (56%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 + V+ + ++EAF E G+ +V Sbjct: 11 NPVNGCGLFQYLEAFFENGISYKVF 35 >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* (A:1-38,A:137-233,A:315-399) Length = 220 Score = 26.1 bits (57), Expect = 3.9 Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 61 PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 I D ++ P + +E + +A + AG++ Sbjct: 39 NITDVCIAVPPWYTEEQRYNIADAARIAGLN 69 >2cvx_A Ribonucleoside-diphosphate reductase large chain 1; eukaryotic, ribonucleotide reductase, DNTP regulation, oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* (A:167-616,A:689-888) Length = 650 Score = 26.0 bits (56), Expect = 4.3 Identities = 8/50 (16%), Positives = 15/50 (30%) Query: 9 TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEP 58 P V +++ P +E + D + + EA E Sbjct: 598 ESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647 Score = 26.0 bits (56), Expect = 5.0 Identities = 8/61 (13%), Positives = 15/61 (24%) Query: 9 TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLS 68 T + V E + P P+K E + + + + Sbjct: 588 TKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647 Query: 69 C 69 C Sbjct: 648 C 648 >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:23-76,A:264-384) Length = 175 Score = 26.0 bits (57), Expect = 4.4 Identities = 3/23 (13%), Positives = 7/23 (30%) Query: 67 LSCPDYVSEAEVTAHIEAFKEAG 89 L+ ++ +E G Sbjct: 153 LTLTAAHEMQDIDRLLEVLHGNG 175 >1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} (A:) Length = 166 Score = 25.9 bits (56), Expect = 4.7 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 + + E+ KE G + +A Sbjct: 9 NEFEDVELIYPYHRLKEEGHEVYIA 33 >3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:27-112) Length = 86 Score = 25.5 bits (56), Expect = 6.6 Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQ 96 D+ S A V A E FK+ G++ A+ Sbjct: 1 DFGSLAPVYAFXELFKQEGIEVTQAE 26 >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:617-685,A:744-752) Length = 78 Score = 25.5 bits (56), Expect = 7.2 Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 2/29 (6%) Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229 N+ + +SG + + K+ Sbjct: 28 CHNSK--DTVTISGPQAPVFEFVEQLRKE 54 >2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase; HET: NAG HDD; 1.71A {Penicillium janthinellum} (A:512-688) Length = 177 Score = 25.1 bits (54), Expect = 7.9 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%) Query: 44 NPSSSSSSTEEAGEPKPPIEDYT----LSCPDYVSEAEVTAHIEAFKEAGVDARVA 95 N ++ + GE ++ S S A+ A GVD V Sbjct: 1 NTTAHIGAF---GEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV 53 >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} (A:) Length = 291 Score = 24.9 bits (53), Expect = 8.8 Identities = 5/27 (18%), Positives = 7/27 (25%) Query: 69 CPDYVSEAEVTAHIEAFKEAGVDARVA 95 E + AG + VA Sbjct: 69 FSTGNHPIETLLPLYHLHAAGFEFEVA 95 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* (A:616-683,A:742-750) Length = 77 Score = 25.1 bits (55), Expect = 9.7 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%) Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229 N+ + +SG + A Q +++ Sbjct: 27 CHNSK--DTVTISGPQAAMSEFLQQLKRE 53 >1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} (A:) Length = 91 Score = 24.8 bits (54), Expect = 9.9 Identities = 7/25 (28%), Positives = 11/25 (44%) Query: 139 IARYFRKEKIPDNDVQSLISAWGFE 163 IA+ K DV+++ AW Sbjct: 4 IAKRTAINKTKKADVKAIADAWQIN 28 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.308 0.126 0.355 Gapped Lambda K H 0.267 0.0579 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,749,669 Number of extensions: 77583 Number of successful extensions: 367 Number of sequences better than 10.0: 1 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 46 Length of query: 234 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 148 Effective length of database: 2,048,819 Effective search space: 303225212 Effective search space used: 303225212 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 53 (24.5 bits)