RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781211|ref|YP_003065624.1| hypothetical protein
CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
         (234 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 42/265 (15%), Positives = 73/265 (27%), Gaps = 109/265 (41%)

Query: 22  RSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAH 81
           R   + P  S   ++  D            + E  E  P      LS  + +++ +V  +
Sbjct: 309 RCYEAYPNTSLPPSILED------------SLENNEGVP---SPMLSISN-LTQEQVQDY 352

Query: 82  IEAF-KEAGVDARVA--------QKVVD-------KLVDHGRKIGEQFGASLEE------ 119
           +           +V           VV         L    RK      + L++      
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFS 410

Query: 120 ERKL-LQTKL-------GSDY-----ETREKDIARY---FRKE--KIP------------ 149
           ERKL    +         S       +   KD+ +    F  +  +IP            
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470

Query: 150 --DNDVQSLISA-------WGFEKTFNF-------FDR--------YAQQNKESSTGDTF 185
              +  + ++         W  E T  F       F             +NK+  TG   
Sbjct: 471 LSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHRNKD-GTG--- 524

Query: 186 VR--SEGSQEADRDFDKVFNTPDFG 208
           VR    G+ + + D        D+G
Sbjct: 525 VRVIVAGTLDINPD-------DDYG 542



 Score = 31.1 bits (70), Expect = 0.21
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 85/222 (38%)

Query: 25  RSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEA 84
           +  P P++  A   +P        ++  E  G+       +       V           
Sbjct: 39  KILPEPTEGFAADDEP--------TTPAELVGK-------FLGYVSSLVEP--------- 74

Query: 85  FKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTK--------LGSDYET-- 134
             + G   +V    +            +F      E   L+          L  + +T  
Sbjct: 75  -SKVGQFDQVLNLCLT-----------EF------ENCYLEGNDIHALAAKLLQENDTTL 116

Query: 135 -REKDIAR-YFR-----KEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTGDTFVR 187
            + K++ + Y       K         +L  A               +   +     F  
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRA-------------VGEGN-AQLVAIF-- 160

Query: 188 SEGSQEADRD-FDK---VFNT-PDFGSRVLSGDKEATKTLRQ 224
             G Q    D F++   ++ T       ++     + +TL +
Sbjct: 161 --GGQGNTDDYFEELRDLYQTYHVLVGDLIK---FSAETLSE 197



 Score = 28.0 bits (62), Expect = 1.8
 Identities = 48/247 (19%), Positives = 66/247 (26%), Gaps = 107/247 (43%)

Query: 57  EPKPPIEDYTL----SCP--------DYVSEAEVTAHI---------EAFKEA-----GV 90
              P   DY L    SCP         YV    VTA +            K A     G+
Sbjct: 223 SNTPDK-DYLLSIPISCPLIGVIQLAHYV----VTAKLLGFTPGELRSYLKGATGHSQGL 277

Query: 91  DARVAQKVVD---KLVDHGRK-------IG----EQFG----------ASLEE-E----- 120
              VA    D         RK       IG    E +            SLE  E     
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337

Query: 121 ----RKLLQTKLGSDYETREKDIA---RYFRKEK---I-----PDNDV-----QSLISAW 160
                 L Q ++       +  +     +    K   I       N V     QSL    
Sbjct: 338 MLSISNLTQEQV-------QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-- 388

Query: 161 GFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVF---NTPDFGSRVLSGDKE 217
                    +   ++ K  S  D   R   S+   + F   F    +P F S +L     
Sbjct: 389 --------LNLTLRKAKAPSGLDQ-SRIPFSERKLK-FSNRFLPVASP-FHSHLLVP--- 434

Query: 218 ATKTLRQ 224
           A+  + +
Sbjct: 435 ASDLINK 441



 Score = 25.7 bits (56), Expect = 8.7
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 20/105 (19%)

Query: 62  IEDYTLSCPD----YVSE--AEVTAHI-EAFKEAGVDARVAQKVVDKLVDHGRKIGEQFG 114
           +E + L  P       S+   +    + E  +    D         +LV  G+ +G  + 
Sbjct: 16  LE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELV--GKFLG--YV 68

Query: 115 ASLEEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISA 159
           +SL E  K+ Q      ++         F    +  ND+ +L + 
Sbjct: 69  SSLVEPSKVGQ------FDQVLNLCLTEFENCYLEGNDIHALAAK 107


>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
           membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
           f.46.1.1 PDB: 2v4d_A 1t5e_A
          Length = 369

 Score = 30.5 bits (67), Expect = 0.33
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 47  SSSSSTEEAGEPK--PPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVD 104
           + SS   EA  P   P +   TL         E+     AF+ A V  +V   ++ +L  
Sbjct: 1   AESSGKSEAPPPAQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRLFK 60

Query: 105 HGRKI 109
            G  +
Sbjct: 61  EGSDV 65


>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
           VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
          Length = 302

 Score = 30.1 bits (67), Expect = 0.43
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 15  PPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVS 74
           PPV E   ++ ++   S      +     N S  S  T+        +   + S     S
Sbjct: 36  PPVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDTKLNFSNLLMMYQDSGS--PDSS 93

Query: 75  EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQ 125
           E +  + +         A +    + K++   + I      + E++  LL+
Sbjct: 94  EEDQQSRLSMLPHL---ADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLK 141


>1q44_A RARO47;, steroid sulphotransferase; APO, structural genomics,
           protein structure initiative, center for eukaryotic
           structural genomics, CESG; 1.90A {Arabidopsis thaliana}
           SCOP: c.37.1.5 PDB: 2q3m_A
          Length = 326

 Score = 29.8 bits (66), Expect = 0.60
 Identities = 13/65 (20%), Positives = 22/65 (33%)

Query: 123 LLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTG 182
           +   +L    E   K IA +     I + +V+ ++    FE   N       +       
Sbjct: 226 VTYEELKKQTEVEMKRIAEFLECGFIEEEEVREIVKLCSFESLSNLEVNKEGKLPNGIET 285

Query: 183 DTFVR 187
            TF R
Sbjct: 286 KTFFR 290


>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis,
           cytoplasm, diaminopimelate biosynthesis, lyase, lysine
           biosynthesis; HET: MLT; 1.96A {Clostridium botulinum}
           PDB: 3ird_A*
          Length = 291

 Score = 29.7 bits (66), Expect = 0.62
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 78  VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQTKL 128
             A I  F   GVD     ++++  +             GE    +  E ++ ++  +
Sbjct: 7   GVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVI 64


>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
           membrane fusion protein, drug efflux pump, periplasmic
           protein; 2.99A {Escherichia coli}
          Length = 341

 Score = 29.4 bits (64), Expect = 0.77
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 58  PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109
           P P  +   +   D       T  ++A ++  V A+V+ ++    V  G K+
Sbjct: 2   PVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKV 53


>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
           transport, biosynthetic protein; HET: GNP; 3.00A
           {Bacillus subtilis} PDB: 2px3_A*
          Length = 296

 Score = 29.0 bits (64), Expect = 0.97
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 70  PDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLG 129
           P+ + +AE     +  +E G+        + KL+    + G     + E     LQ  L 
Sbjct: 39  PEPLRKAE-----KLLQETGIKESTKTNTLKKLLRFSVEAGG---LTEENVVGKLQEILC 90

Query: 130 SDYETREK 137
               + +K
Sbjct: 91  DMLPSADK 98


>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein,
           winged helix, rossmann fold, NAD+; HET: NAD; 1.50A
           {Streptococcus agalactiae serogroup iiiorganism_taxid}
           PDB: 3keq_A* 3ket_A*
          Length = 212

 Score = 28.9 bits (65), Expect = 1.0
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 44  NPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLV 103
           + +     T E G P   I        D++ ++++   I       V +  AQ+V D LV
Sbjct: 119 DSNDLVGKTTEDGIPVYGIST----INDHLIDSDIETAILT-----VPSTEAQEVADILV 169

Query: 104 DHG 106
             G
Sbjct: 170 KAG 172


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.4 bits (62), Expect = 1.5
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 20/71 (28%)

Query: 118 EEERKLLQ-----TKLGSDYETRE---KDIARYFRK--EKIPDNDVQSLISAWGFEKTFN 167
           EE+RK LQ     +K+  + E RE   KD+  + ++  E++  N + + I+    +K F 
Sbjct: 92  EEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA----DKAF- 145

Query: 168 FFDRYAQQNKE 178
               Y Q + +
Sbjct: 146 ----YQQPDAD 152



 Score = 26.8 bits (58), Expect = 4.3
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 14/63 (22%)

Query: 170 DRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGD--KEATKTLRQWAE 227
           DR  Q+  ES      +R    +E  R   K     D  S+V+  +  ++A K L +W +
Sbjct: 78  DRLTQE-PES------IRK--WREEQR---KRLQELDAASKVMEQEWREKAKKDLEEWNQ 125

Query: 228 KQA 230
           +Q+
Sbjct: 126 RQS 128


>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
          PFPI, THIJ, bacterial targets at IGS-CNRS, france,
          BIGS, structural genomics; 2.03A {Escherichia coli}
          SCOP: c.23.16.2
          Length = 193

 Score = 28.0 bits (62), Expect = 2.0
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
          D   ++E T+  + F++AG +    
Sbjct: 32 DEFEDSEFTSPADEFRKAGHEVITI 56


>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
          structure initiative, midwest center for structural
          genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
          vpi-5482}
          Length = 175

 Score = 28.1 bits (62), Expect = 2.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARV 94
          + V+   +  ++EAF E G+  +V
Sbjct: 11 NPVNGCGLFQYLEAFFENGISYKV 34


>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.90A {Aquifex aeolicus}
          Length = 294

 Score = 27.8 bits (61), Expect = 2.0
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 78  VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
           + A I  FKE  VD      +++  VD+G          GE    + EE  K+++ 
Sbjct: 6   IVALITPFKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEF 61


>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
          cytoplasm, disease mutation, nucleus, oncogene,
          oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
          1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A
          3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A
          1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ...
          Length = 197

 Score = 27.5 bits (60), Expect = 2.5
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
              E E    ++  + AG+   VA
Sbjct: 12 KGAEEMETVIPVDVMRRAGIKVTVA 36


>3h3g_A Fusion protein of maltose-binding periplasmic domain and human
           parathyroid hormone...; GPCR, extracellular domain,
           PTHRP, PTH, PThr1, periplasm, sugar transport,
           transport, membrane protein; HET: MAL; 1.94A
           {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A*
           3eht_A*
          Length = 539

 Score = 27.5 bits (60), Expect = 2.7
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 8/60 (13%)

Query: 22  RSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAH 81
              +  P  S+       P+  +                P E   + CPDY+ +     H
Sbjct: 438 EEDKEAPTGSRYRGRPCLPEWDHILCWPLG--------APGEVVAVPCPDYIYDFNHKGH 489


>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid
           biosynthesis, cytoplasm, diaminopimelate biosynthesis,
           lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB:
           3bi8_A* 3ird_A*
          Length = 291

 Score = 27.3 bits (60), Expect = 3.4
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 7/49 (14%)

Query: 85  FKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
           F   GVD     ++++  +             GE    +  E ++ ++ 
Sbjct: 14  FTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62


>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein
           and GTPase, retinitis pigmentosa, GTP-binding,
           lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens}
           PDB: 3bh6_B* 2bx6_A
          Length = 352

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 32  KEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91
            E+AV  D      +    +   + E    I   +       S+      + A      +
Sbjct: 192 PEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIAN 251

Query: 92  ARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYFR 144
           AR   K++D++V  G                L+QTK   +   + +D  R FR
Sbjct: 252 AR---KLIDEMVGKG--------------FFLVQTK---EVSMKAEDAQRVFR 284


>3ej6_A Catalase-3; heme, hydrogen peroxide, iron, metal-binding,
           oxidoreductase, peroxidase; HET: NAG HEM; 2.30A
           {Neurospora crassa}
          Length = 688

 Score = 27.2 bits (60), Expect = 3.7
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 34  EAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYT---LSCPDYVSEAEVTAHIEAFKEAGV 90
           EA Q DP     ++ +       E  P I       LS     S  +  A  E  ++ G+
Sbjct: 508 EAPQPDPT-YYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGL 566

Query: 91  DARVAQKVVDKLVDH 105
              V  + +   VD 
Sbjct: 567 KVTVIAEYLASGVDQ 581


>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
           beta barrel, transport protein; 2.71A {Escherichia coli}
          Length = 277

 Score = 27.0 bits (58), Expect = 3.7
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 77  EVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109
           E+     A++ A V  +V+  ++ +    G  I
Sbjct: 12  ELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDI 44


>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
           structural protein; 2.10A {Thermotoga maritima} SCOP:
           c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A*
          Length = 344

 Score = 27.0 bits (59), Expect = 4.1
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 57  EPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGV 90
                     +  P  +++ E  A ++A  EAG 
Sbjct: 90  GMNLFKPRVVIGVPIGITDVERRAILDAGLEAGA 123


>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
           {Escherichia coli} SCOP: c.79.1.1
          Length = 428

 Score = 26.7 bits (58), Expect = 4.2
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 124 LQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTGD 183
           +   L  D+ TR   I   F  ++IP   ++  +        F F    A    +    +
Sbjct: 43  IDEMLKLDFVTRSAKILSAFIGDEIPQEILEERV-----RAAFAFPAPVANVESDVGCLE 97

Query: 184 TFVRSEGS 191
            F     +
Sbjct: 98  LFHGPTLA 105


>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG,
           parkinson'S disease, chaperone, cysteine protease, PSI;
           1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
          Length = 224

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 16/63 (25%), Positives = 23/63 (36%)

Query: 77  EVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETRE 136
           E       F+E G D +VA     ++    R I E+  +  E E  L  T   S  +   
Sbjct: 30  EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHG 89

Query: 137 KDI 139
            D 
Sbjct: 90  FDA 92


>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
           protein lysine methyltransferase; HET: SAM; 2.45A {Pisum
           sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A*
           2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
          Length = 440

 Score = 26.4 bits (57), Expect = 5.3
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 75  EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYET 134
           E+     I    E  V     + +   + +  +     +  ++E++R+L +  L S    
Sbjct: 325 ESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDS---- 380

Query: 135 REKDIARYFRKEK 147
           R          EK
Sbjct: 381 RLAIAVGIREGEK 393


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 6.2
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 6/18 (33%)

Query: 215 DKEATKTLRQWAEKQATL 232
           +K+A K L      QA+L
Sbjct: 18  EKQALKKL------QASL 29


>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and
          ferritin-like domains; YP_324989.1, structural
          genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc
          29413}
          Length = 365

 Score = 26.0 bits (57), Expect = 7.5
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
            V + E        K+AG +  V 
Sbjct: 19 QAVEDTEFIIPCNGLKQAGFEVVVL 43


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 26.1 bits (57), Expect = 7.9
 Identities = 5/40 (12%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 121 RKLLQTKLGSDYETREKDIARYFRKEKIPD-NDVQSLISA 159
           R+++  +   +++  ++++A   + +K+P  +++  L   
Sbjct: 355 REMVYPQF-YEHKLNDRNVASMVKLDKVPVMDEIYDLTKE 393


>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing
           factor, RNA binding protein; 2.30A {Pyrococcus
           horikoshii OT3}
          Length = 219

 Score = 25.9 bits (56), Expect = 8.4
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 109 IGEQFGASLEEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWG 161
           +GE+F   +++   + +     + E   ++  +     KIP + +  LI   G
Sbjct: 1   MGEEFEKLMKKFENVNKDGEIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKG 53


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.308    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,966,921
Number of extensions: 89914
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 40
Length of query: 234
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 145
Effective length of database: 3,535,514
Effective search space: 512649530
Effective search space used: 512649530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.7 bits)