RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62] (234 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 47.6 bits (113), Expect = 2e-06 Identities = 42/265 (15%), Positives = 73/265 (27%), Gaps = 109/265 (41%) Query: 22 RSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAH 81 R + P S ++ D + E E P LS + +++ +V + Sbjct: 309 RCYEAYPNTSLPPSILED------------SLENNEGVP---SPMLSISN-LTQEQVQDY 352 Query: 82 IEAF-KEAGVDARVA--------QKVVD-------KLVDHGRKIGEQFGASLEE------ 119 + +V VV L RK + L++ Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFS 410 Query: 120 ERKL-LQTKL-------GSDY-----ETREKDIARY---FRKE--KIP------------ 149 ERKL + S + KD+ + F + +IP Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470 Query: 150 --DNDVQSLISA-------WGFEKTFNF-------FDR--------YAQQNKESSTGDTF 185 + + ++ W E T F F +NK+ TG Sbjct: 471 LSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHRNKD-GTG--- 524 Query: 186 VR--SEGSQEADRDFDKVFNTPDFG 208 VR G+ + + D D+G Sbjct: 525 VRVIVAGTLDINPD-------DDYG 542 Score = 31.1 bits (70), Expect = 0.21 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 85/222 (38%) Query: 25 RSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEA 84 + P P++ A +P ++ E G+ + V Sbjct: 39 KILPEPTEGFAADDEP--------TTPAELVGK-------FLGYVSSLVEP--------- 74 Query: 85 FKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTK--------LGSDYET-- 134 + G +V + +F E L+ L + +T Sbjct: 75 -SKVGQFDQVLNLCLT-----------EF------ENCYLEGNDIHALAAKLLQENDTTL 116 Query: 135 -REKDIAR-YFR-----KEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTGDTFVR 187 + K++ + Y K +L A + + F Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRA-------------VGEGN-AQLVAIF-- 160 Query: 188 SEGSQEADRD-FDK---VFNT-PDFGSRVLSGDKEATKTLRQ 224 G Q D F++ ++ T ++ + +TL + Sbjct: 161 --GGQGNTDDYFEELRDLYQTYHVLVGDLIK---FSAETLSE 197 Score = 28.0 bits (62), Expect = 1.8 Identities = 48/247 (19%), Positives = 66/247 (26%), Gaps = 107/247 (43%) Query: 57 EPKPPIEDYTL----SCP--------DYVSEAEVTAHI---------EAFKEA-----GV 90 P DY L SCP YV VTA + K A G+ Sbjct: 223 SNTPDK-DYLLSIPISCPLIGVIQLAHYV----VTAKLLGFTPGELRSYLKGATGHSQGL 277 Query: 91 DARVAQKVVD---KLVDHGRK-------IG----EQFG----------ASLEE-E----- 120 VA D RK IG E + SLE E Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337 Query: 121 ----RKLLQTKLGSDYETREKDIA---RYFRKEK---I-----PDNDV-----QSLISAW 160 L Q ++ + + + K I N V QSL Sbjct: 338 MLSISNLTQEQV-------QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-- 388 Query: 161 GFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVF---NTPDFGSRVLSGDKE 217 + ++ K S D R S+ + F F +P F S +L Sbjct: 389 --------LNLTLRKAKAPSGLDQ-SRIPFSERKLK-FSNRFLPVASP-FHSHLLVP--- 434 Query: 218 ATKTLRQ 224 A+ + + Sbjct: 435 ASDLINK 441 Score = 25.7 bits (56), Expect = 8.7 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 20/105 (19%) Query: 62 IEDYTLSCPD----YVSE--AEVTAHI-EAFKEAGVDARVAQKVVDKLVDHGRKIGEQFG 114 +E + L P S+ + + E + D +LV G+ +G + Sbjct: 16 LE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA--ELV--GKFLG--YV 68 Query: 115 ASLEEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISA 159 +SL E K+ Q ++ F + ND+ +L + Sbjct: 69 SSLVEPSKVGQ------FDQVLNLCLTEFENCYLEGNDIHALAAK 107 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Length = 369 Score = 30.5 bits (67), Expect = 0.33 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 47 SSSSSTEEAGEPK--PPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVD 104 + SS EA P P + TL E+ AF+ A V +V ++ +L Sbjct: 1 AESSGKSEAPPPAQTPEVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRLFK 60 Query: 105 HGRKI 109 G + Sbjct: 61 EGSDV 65 >2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* Length = 302 Score = 30.1 bits (67), Expect = 0.43 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 15 PPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVS 74 PPV E ++ ++ S + N S S T+ + + S S Sbjct: 36 PPVREGPVTRSASRAASLHSLSDASSDSFNHSPESVDTKLNFSNLLMMYQDSGS--PDSS 93 Query: 75 EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQ 125 E + + + A + + K++ + I + E++ LL+ Sbjct: 94 EEDQQSRLSMLPHL---ADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLK 141 >1q44_A RARO47;, steroid sulphotransferase; APO, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A Length = 326 Score = 29.8 bits (66), Expect = 0.60 Identities = 13/65 (20%), Positives = 22/65 (33%) Query: 123 LLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTG 182 + +L E K IA + I + +V+ ++ FE N + Sbjct: 226 VTYEELKKQTEVEMKRIAEFLECGFIEEEEVREIVKLCSFESLSNLEVNKEGKLPNGIET 285 Query: 183 DTFVR 187 TF R Sbjct: 286 KTFFR 290 >3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* Length = 291 Score = 29.7 bits (66), Expect = 0.62 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 7/58 (12%) Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQTKL 128 A I F GVD ++++ + GE + E ++ ++ + Sbjct: 7 GVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVI 64 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Length = 341 Score = 29.4 bits (64), Expect = 0.77 Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 58 PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109 P P + + D T ++A ++ V A+V+ ++ V G K+ Sbjct: 2 PVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKV 53 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Length = 296 Score = 29.0 bits (64), Expect = 0.97 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 70 PDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLG 129 P+ + +AE + +E G+ + KL+ + G + E LQ L Sbjct: 39 PEPLRKAE-----KLLQETGIKESTKTNTLKKLLRFSVEAGG---LTEENVVGKLQEILC 90 Query: 130 SDYETREK 137 + +K Sbjct: 91 DMLPSADK 98 >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Length = 212 Score = 28.9 bits (65), Expect = 1.0 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 44 NPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLV 103 + + T E G P I D++ ++++ I V + AQ+V D LV Sbjct: 119 DSNDLVGKTTEDGIPVYGIST----INDHLIDSDIETAILT-----VPSTEAQEVADILV 169 Query: 104 DHG 106 G Sbjct: 170 KAG 172 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.4 bits (62), Expect = 1.5 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 20/71 (28%) Query: 118 EEERKLLQ-----TKLGSDYETRE---KDIARYFRK--EKIPDNDVQSLISAWGFEKTFN 167 EE+RK LQ +K+ + E RE KD+ + ++ E++ N + + I+ +K F Sbjct: 92 EEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA----DKAF- 145 Query: 168 FFDRYAQQNKE 178 Y Q + + Sbjct: 146 ----YQQPDAD 152 Score = 26.8 bits (58), Expect = 4.3 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 14/63 (22%) Query: 170 DRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGD--KEATKTLRQWAE 227 DR Q+ ES +R +E R K D S+V+ + ++A K L +W + Sbjct: 78 DRLTQE-PES------IRK--WREEQR---KRLQELDAASKVMEQEWREKAKKDLEEWNQ 125 Query: 228 KQA 230 +Q+ Sbjct: 126 RQS 128 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193 Score = 28.0 bits (62), Expect = 2.0 Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 D ++E T+ + F++AG + Sbjct: 32 DEFEDSEFTSPADEFRKAGHEVITI 56 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175 Score = 28.1 bits (62), Expect = 2.0 Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARV 94 + V+ + ++EAF E G+ +V Sbjct: 11 NPVNGCGLFQYLEAFFENGISYKV 34 >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Length = 294 Score = 27.8 bits (61), Expect = 2.0 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126 + A I FKE VD +++ VD+G GE + EE K+++ Sbjct: 6 IVALITPFKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEF 61 >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ... Length = 197 Score = 27.5 bits (60), Expect = 2.5 Identities = 6/25 (24%), Positives = 10/25 (40%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 E E ++ + AG+ VA Sbjct: 12 KGAEEMETVIPVDVMRRAGIKVTVA 36 >3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A* Length = 539 Score = 27.5 bits (60), Expect = 2.7 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 8/60 (13%) Query: 22 RSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAH 81 + P S+ P+ + P E + CPDY+ + H Sbjct: 438 EEDKEAPTGSRYRGRPCLPEWDHILCWPLG--------APGEVVAVPCPDYIYDFNHKGH 489 >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Length = 291 Score = 27.3 bits (60), Expect = 3.4 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 7/49 (14%) Query: 85 FKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126 F GVD ++++ + GE + E ++ ++ Sbjct: 14 FTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62 >3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Length = 352 Score = 27.2 bits (60), Expect = 3.5 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%) Query: 32 KEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 E+AV D + + + E I + S+ + A + Sbjct: 192 PEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIAN 251 Query: 92 ARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYFR 144 AR K++D++V G L+QTK + + +D R FR Sbjct: 252 AR---KLIDEMVGKG--------------FFLVQTK---EVSMKAEDAQRVFR 284 >3ej6_A Catalase-3; heme, hydrogen peroxide, iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} Length = 688 Score = 27.2 bits (60), Expect = 3.7 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 34 EAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYT---LSCPDYVSEAEVTAHIEAFKEAGV 90 EA Q DP ++ + E P I LS S + A E ++ G+ Sbjct: 508 EAPQPDPT-YYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGL 566 Query: 91 DARVAQKVVDKLVDH 105 V + + VD Sbjct: 567 KVTVIAEYLASGVDQ 581 >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Length = 277 Score = 27.0 bits (58), Expect = 3.7 Identities = 7/33 (21%), Positives = 15/33 (45%) Query: 77 EVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109 E+ A++ A V +V+ ++ + G I Sbjct: 12 ELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDI 44 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* Length = 344 Score = 27.0 bits (59), Expect = 4.1 Identities = 7/34 (20%), Positives = 13/34 (38%) Query: 57 EPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGV 90 + P +++ E A ++A EAG Sbjct: 90 GMNLFKPRVVIGVPIGITDVERRAILDAGLEAGA 123 >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Length = 428 Score = 26.7 bits (58), Expect = 4.2 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 124 LQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTGD 183 + L D+ TR I F ++IP ++ + F F A + + Sbjct: 43 IDEMLKLDFVTRSAKILSAFIGDEIPQEILEERV-----RAAFAFPAPVANVESDVGCLE 97 Query: 184 TFVRSEGS 191 F + Sbjct: 98 LFHGPTLA 105 >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224 Score = 26.7 bits (58), Expect = 4.3 Identities = 16/63 (25%), Positives = 23/63 (36%) Query: 77 EVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETRE 136 E F+E G D +VA ++ R I E+ + E E L T S + Sbjct: 30 EFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHG 89 Query: 137 KDI 139 D Sbjct: 90 FDA 92 >2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 Score = 26.4 bits (57), Expect = 5.3 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 75 EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYET 134 E+ I E V + + + + + + ++E++R+L + L S Sbjct: 325 ESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDS---- 380 Query: 135 REKDIARYFRKEK 147 R EK Sbjct: 381 RLAIAVGIREGEK 393 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 6.2 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 6/18 (33%) Query: 215 DKEATKTLRQWAEKQATL 232 +K+A K L QA+L Sbjct: 18 EKQALKKL------QASL 29 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365 Score = 26.0 bits (57), Expect = 7.5 Identities = 6/25 (24%), Positives = 9/25 (36%) Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95 V + E K+AG + V Sbjct: 19 QAVEDTEFIIPCNGLKQAGFEVVVL 43 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 26.1 bits (57), Expect = 7.9 Identities = 5/40 (12%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Query: 121 RKLLQTKLGSDYETREKDIARYFRKEKIPD-NDVQSLISA 159 R+++ + +++ ++++A + +K+P +++ L Sbjct: 355 REMVYPQF-YEHKLNDRNVASMVKLDKVPVMDEIYDLTKE 393 >2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii OT3} Length = 219 Score = 25.9 bits (56), Expect = 8.4 Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 109 IGEQFGASLEEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWG 161 +GE+F +++ + + + E ++ + KIP + + LI G Sbjct: 1 MGEEFEKLMKKFENVNKDGEIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKG 53 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.308 0.126 0.355 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,966,921 Number of extensions: 89914 Number of successful extensions: 396 Number of sequences better than 10.0: 1 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 40 Length of query: 234 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 145 Effective length of database: 3,535,514 Effective search space: 512649530 Effective search space used: 512649530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 55 (25.7 bits)