BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781211|ref|YP_003065624.1| hypothetical protein
CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
         (234 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score =  479 bits (1234), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MSDETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKP 60
           MSDETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKP
Sbjct: 1   MSDETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKP 60

Query: 61  PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEE 120
           PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEE
Sbjct: 61  PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEE 120

Query: 121 RKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESS 180
           RKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESS
Sbjct: 121 RKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESS 180

Query: 181 TGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEATKTLRQWAEKQATLNQ 234
           TGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEATKTLRQWAEKQATLNQ
Sbjct: 181 TGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEATKTLRQWAEKQATLNQ 234


>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 25.8 bits (55), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 75  EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109
           E ++ AH  AF  AG  A     ++  L++H  KI
Sbjct: 24  EKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKI 58


>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
          Length = 779

 Score = 23.1 bits (48), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 49  SSSTEEAGEPKPPIEDY 65
           + + EEAG    PIEDY
Sbjct: 411 AKAAEEAGVASSPIEDY 427


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.308    0.126    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,240
Number of Sequences: 1233
Number of extensions: 5709
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 234
length of database: 328,796
effective HSP length: 71
effective length of query: 163
effective length of database: 241,253
effective search space: 39324239
effective search space used: 39324239
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 37 (18.9 bits)