Query gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:46:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781212.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3y_A Epididymal secretory gl 42.5 15 0.00064 17.5 2.9 30 74-103 50-81 (215)
2 2r37_A Glutathione peroxidase 35.3 25 0.001 16.3 3.0 30 74-103 32-63 (207)
3 2f8a_A Glutathione peroxidase 24.2 41 0.0017 15.0 2.9 33 72-104 39-74 (208)
4 1sc6_A PGDH, D-3-phosphoglycer 22.5 21 0.00087 16.8 0.7 33 1-33 214-249 (404)
5 3jtm_A Formate dehydrogenase, 16.9 38 0.0016 15.2 1.1 85 1-106 237-324 (351)
6 2pv1_A Chaperone SURA; surviVa 15.9 61 0.0026 14.0 1.9 12 23-34 40-51 (103)
7 12as_A Asparagine synthetase; 15.4 49 0.0021 14.6 1.4 19 16-34 250-268 (330)
8 3ba1_A HPPR, hydroxyphenylpyru 14.4 68 0.0029 13.7 1.8 83 1-106 232-318 (333)
9 3hie_A Protein PSL1, exocyst c 13.8 71 0.003 13.6 2.5 27 21-49 2-28 (171)
10 3gpk_A PPIC-type peptidyl-prol 13.0 75 0.0032 13.5 2.1 10 24-33 42-51 (112)
No 1
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens}
Probab=42.53 E-value=15 Score=17.51 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEEECCCCEEEEEEECCCCCC--HHHHHHHH
Q ss_conf 0101016632568873146865--99999986
Q gi|254781212|r 74 QLALLEGKRSLAVHIASNCGLS--FERIVQMY 103 (109)
Q Consensus 74 qlallegkrslavhiasncgls--ferivqmy 103 (109)
.|.-+.||--|.|..||.||+. ++...++|
T Consensus 50 ~L~~ykGKvvLIVNvAS~CG~t~qy~~L~~L~ 81 (215)
T 2i3y_A 50 SFKQYVGKHILFVNVATYCGLTAQYPELNALQ 81 (215)
T ss_dssp EGGGGTTSEEEEEEECSSSGGGGGHHHHHHHH
T ss_pred CHHHCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 78992998899998046789874699999999
No 2
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium, SGC, oxidoreductase, polymorphism, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=35.27 E-value=25 Score=16.31 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred EEEEECCCCEEEEEEECCCCCC--HHHHHHHH
Q ss_conf 0101016632568873146865--99999986
Q gi|254781212|r 74 QLALLEGKRSLAVHIASNCGLS--FERIVQMY 103 (109)
Q Consensus 74 qlallegkrslavhiasncgls--ferivqmy 103 (109)
.|.-..||--|.|..||.||+. ++.+.++|
T Consensus 32 ~L~~ykGKvvLIVNvAS~Cg~t~qy~~L~~L~ 63 (207)
T 2r37_A 32 PFKQYAGKYVLFVNVASYGGLTGQYIELNALQ 63 (207)
T ss_dssp EGGGGTTSEEEEEEECSSSTTTTHHHHHHHHH
T ss_pred CHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 88991998899997777789873489999999
No 3
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=24.17 E-value=41 Score=15.04 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.0
Q ss_pred HHEEEEECCCCEEEEEEECCCCCC---HHHHHHHHC
Q ss_conf 000101016632568873146865---999999862
Q gi|254781212|r 72 AHQLALLEGKRSLAVHIASNCGLS---FERIVQMYS 104 (109)
Q Consensus 72 ahqlallegkrslavhiasncgls---ferivqmys 104 (109)
...|.-+.||--|.|-.||-||.. ++.+.++|.
T Consensus 39 ~v~Ls~ykGKVvLIvN~AS~Cg~~~~~y~~L~~L~~ 74 (208)
T 2f8a_A 39 PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQR 74 (208)
T ss_dssp CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHH
T ss_pred EECHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 876899499889999840677887778999999999
No 4
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=22.47 E-value=21 Score=16.75 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHH
Q ss_conf 9639999999987664---22541044899977568
Q gi|254781212|r 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEE 33 (109)
Q Consensus 1 mvnfrkladmikskvl---srgytvdsdalarqlee 33 (109)
|+|-..++-|-+..+| +||-.||.+||...|++
T Consensus 214 lin~~~l~~mK~gailIN~aRG~iVde~aL~~aL~~ 249 (404)
T 1sc6_A 214 MMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHC
T ss_conf 158999974699869994377765658999999751
No 5
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=16.86 E-value=38 Score=15.22 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCCCCHHEEEE
Q ss_conf 963999999998766---42254104489997756888998887776407886051011234053000125752000101
Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLAL 77 (109)
Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqleederrirhykhvystpegrfvltdlmveggllssvsndsahqlal 77 (109)
|+|-..++.|-+..+ .+||-.||.+||.+-|++. +|..+ ..|..-+--+ ...|.|--
T Consensus 237 li~~~~~~~mk~~a~lIN~sRG~iVde~aL~~aL~~g--~i~gA------------~LDV~~~EP~------~~~~pl~~ 296 (351)
T 3jtm_A 237 MFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG--HIGGY------------SGDVWDPQPA------PKDHPWRY 296 (351)
T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT--SEEEE------------EESCCSSSSC------CTTCGGGT
T ss_pred CCCHHHHHHCCCCCEEEECCCCCEECHHHHHHHHHHC--CCEEE------------EEECCCCCCC------CCCCHHHH
T ss_conf 6399999737999789985887538799999999729--84299------------9816999989------99895884
Q ss_pred ECCCCEEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 01663256887314686599999986268
Q gi|254781212|r 78 LEGKRSLAVHIASNCGLSFERIVQMYSDN 106 (109)
Q Consensus 78 legkrslavhiasncglsferivqmysdn 106 (109)
+. .--+.-|||+...-+++|+.++.-+|
T Consensus 297 ~~-nvilTPHiag~T~e~~~~~~~~~~en 324 (351)
T 3jtm_A 297 MP-NQAMTPHTSGTTIDAQLRYAAGTKDM 324 (351)
T ss_dssp ST-TBCCCCSCGGGSHHHHHHHHHHHHHH
T ss_pred CC-CEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99-88998842728499999999999999
No 6
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=15.92 E-value=61 Score=14.02 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHH
Q ss_conf 448999775688
Q gi|254781212|r 23 DSDALARQLEED 34 (109)
Q Consensus 23 dsdalarqleed 34 (109)
+-+.+|++.-+|
T Consensus 40 ~F~~la~~~S~d 51 (103)
T 2pv1_A 40 DFGKLAIAHSAD 51 (103)
T ss_dssp CHHHHHHHHCCS
T ss_pred CHHHHHHHHCCC
T ss_conf 999999996769
No 7
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=15.44 E-value=49 Score=14.57 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=15.6
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q ss_conf 4225410448999775688
Q gi|254781212|r 16 LSRGYTVDSDALARQLEED 34 (109)
Q Consensus 16 lsrgytvdsdalarqleed 34 (109)
-|-|..||.++|.+||+..
T Consensus 250 SSMGIRVd~~sL~~QL~~~ 268 (330)
T 12as_A 250 SSMGIRVDADTLKHQLALT 268 (330)
T ss_dssp EEEEEBCCHHHHHHHHHHH
T ss_pred ECCEEEECHHHHHHHHHHC
T ss_conf 3562688899999999975
No 8
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=14.35 E-value=68 Score=13.75 Aligned_cols=83 Identities=24% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEHHHHHCCCCCCCCCCCCHHEEE
Q ss_conf 9639999999987664---22541044899977568889988877-7640788605101123405300012575200010
Q gi|254781212|r 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEEDERRIRHYK-HVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLA 76 (109)
Q Consensus 1 mvnfrkladmikskvl---srgytvdsdalarqleederrirhyk-hvystpegrfvltdlmveggllssvsndsahqla 76 (109)
|+|-..++-|-+.-+| +||-.||.+||..-|++. +|+++- .|+. + |- . ..+.|.
T Consensus 232 li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g--~i~ga~LDVf~-~-----------EP-~-------~~~~L~ 289 (333)
T 3ba1_A 232 IINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG--RLGGAGLDVFE-R-----------EP-E-------VPEKLF 289 (333)
T ss_dssp CBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT--SSCEEEESCCT-T-----------TT-C-------CCGGGG
T ss_pred HCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC--CEEEEEEECCC-C-----------CC-C-------CCHHHH
T ss_conf 3169999862553448983476445789999999829--85389984799-9-----------99-9-------984785
Q ss_pred EECCCCEEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 101663256887314686599999986268
Q gi|254781212|r 77 LLEGKRSLAVHIASNCGLSFERIVQMYSDN 106 (109)
Q Consensus 77 llegkrslavhiasncglsferivqmysdn 106 (109)
-++ .-.+.-||++.+--+++++.++--+|
T Consensus 290 ~~~-nvilTPHia~~t~e~~~~~~~~~~~n 318 (333)
T 3ba1_A 290 GLE-NVVLLPHVGSGTVETRKVMADLVVGN 318 (333)
T ss_dssp GCT-TEEECSSCTTCSHHHHHHHHHHHHHH
T ss_pred CCC-CEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 699-99997842519599999999999999
No 9
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=13.80 E-value=71 Score=13.63 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10448999775688899888777640788
Q gi|254781212|r 21 TVDSDALARQLEEDERRIRHYKHVYSTPE 49 (109)
Q Consensus 21 tvdsdalarqleederrirhykhvystpe 49 (109)
+..|.+||.|.|.+.|||-.. +||-+.
T Consensus 2 s~~~n~la~~~e~~r~~ii~s--cfsk~~ 28 (171)
T 3hie_A 2 SQTSNFLAEQYERDRKAIINC--CFSRPD 28 (171)
T ss_dssp ---CHHHHHHHHHHHHHHHHH--HSSCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHH--HHCCCC
T ss_conf 641067899888889899998--624745
No 10
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=12.98 E-value=75 Score=13.49 Aligned_cols=10 Identities=50% Similarity=0.345 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q ss_conf 4899977568
Q gi|254781212|r 24 SDALARQLEE 33 (109)
Q Consensus 24 sdalarqlee 33 (109)
-+.+|++.-+
T Consensus 42 F~~la~~~S~ 51 (112)
T 3gpk_A 42 FVAYARQYSE 51 (112)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHCC
T ss_conf 9999999680
Done!