Query gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 109 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:42:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781212.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2f8aa1 c.47.1.10 (A:12-195) G 50.0 7.1 0.00052 18.1 3.3 33 72-104 16-51 (184) 2 d1j4aa1 c.2.1.4 (A:104-300) D- 23.4 13 0.00095 16.5 1.1 34 1-34 113-149 (197) 3 d2naca1 c.2.1.4 (A:148-335) Fo 18.1 11 0.00078 17.0 -0.3 33 1-33 117-152 (188) 4 d1gdha1 c.2.1.4 (A:101-291) D- 16.6 14 0.001 16.3 0.0 34 1-34 120-156 (191) 5 d12asa_ d.104.1.1 (A:) Asparag 16.1 25 0.0018 14.9 1.2 19 16-34 247-265 (327) 6 d1mx3a1 c.2.1.4 (A:126-318) Tr 15.7 14 0.00099 16.4 -0.2 33 2-34 122-157 (193) 7 d1ygya1 c.2.1.4 (A:99-282) Pho 14.8 14 0.001 16.3 -0.3 32 2-33 116-150 (184) 8 d1dxya1 c.2.1.4 (A:101-299) D- 14.1 24 0.0017 15.0 0.7 33 1-33 114-149 (199) 9 d1sc6a1 c.2.1.4 (A:108-295) Ph 12.0 31 0.0023 14.4 0.7 33 1-33 113-148 (188) 10 d1ho8a_ a.118.1.9 (A:) Regulat 10.7 52 0.0038 13.0 3.6 48 4-57 394-443 (477) No 1 >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Probab=49.98 E-value=7.1 Score=18.05 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=24.6 Q ss_pred HHEEEEECCCCEEEEEEECCCCCC---HHHHHHHHC Q ss_conf 000101016632568873146865---999999862 Q gi|254781212|r 72 AHQLALLEGKRSLAVHIASNCGLS---FERIVQMYS 104 (109) Q Consensus 72 ahqlallegkrslavhiasncgls---ferivqmys 104 (109) ...|.-..||--|.|..||.||.. ++.+.++|. T Consensus 16 ~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ 51 (184) T d2f8aa1 16 PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQR 51 (184) T ss_dssp CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHH T ss_pred EECHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 846899299889999954668765555079997545 No 2 >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Probab=23.36 E-value=13 Score=16.53 Aligned_cols=34 Identities=41% Similarity=0.570 Sum_probs=22.2 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH Q ss_conf 963999999998766---4225410448999775688 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED 34 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqleed 34 (109) |+|-..++.|-+..+ .+||-.||.+||.+.|++. T Consensus 113 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 149 (197) T d1j4aa1 113 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 149 (197) T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT T ss_pred CCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC T ss_conf 3458998630774279734743110169999998536 No 3 >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Probab=18.14 E-value=11 Score=17.04 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=18.1 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH Q ss_conf 963999999998766---422541044899977568 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEE 33 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqlee 33 (109) |+|...++-|-+.-+ .+||-.||.+||.+.|++ T Consensus 117 li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~ 152 (188) T d2naca1 117 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 152 (188) T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf 327999985799988996271655129999999857 No 4 >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Probab=16.58 E-value=14 Score=16.33 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=20.6 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH Q ss_conf 963999999998766---4225410448999775688 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED 34 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqleed 34 (109) |+|-..++-|-+.-+ .+||-.||.+||..-|++. T Consensus 120 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191) T d1gdha1 120 FFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156 (191) T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT T ss_pred EECHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCC T ss_conf 5268886284876079965786301038999999839 No 5 >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} Probab=16.10 E-value=25 Score=14.90 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=15.5 Q ss_pred HHCCCCCCHHHHHHHHHHH Q ss_conf 4225410448999775688 Q gi|254781212|r 16 LSRGYTVDSDALARQLEED 34 (109) Q Consensus 16 lsrgytvdsdalarqleed 34 (109) -|-|..||.++|.+||+.. T Consensus 247 SSMGIRVd~~~L~~QL~~~ 265 (327) T d12asa_ 247 SSMGIRVDADTLKHQLALT 265 (327) T ss_dssp EEEEEBCCHHHHHHHHHHH T ss_pred ECCEEEECHHHHHHHHHHC T ss_conf 3563688899999999975 No 6 >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Probab=15.71 E-value=14 Score=16.42 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=18.9 Q ss_pred CCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH Q ss_conf 63999999998766---4225410448999775688 Q gi|254781212|r 2 VNFRKLADMIKSKV---LSRGYTVDSDALARQLEED 34 (109) Q Consensus 2 vnfrkladmikskv---lsrgytvdsdalarqleed 34 (109) +|...++-|-+..+ .+||-.||.+||.+-|++. T Consensus 122 i~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 157 (193) T d1mx3a1 122 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 157 (193) T ss_dssp BSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT T ss_pred HHHHHHHCCCCCCEEEECCCCEEECHHHHHHHHHCC T ss_conf 668997323999769943782299499999999729 No 7 >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=14.81 E-value=14 Score=16.32 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=16.3 Q ss_pred CCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH Q ss_conf 63999999998766---422541044899977568 Q gi|254781212|r 2 VNFRKLADMIKSKV---LSRGYTVDSDALARQLEE 33 (109) Q Consensus 2 vnfrkladmikskv---lsrgytvdsdalarqlee 33 (109) +|-..+.-|-+.-+ .+||-.||.+||...|++ T Consensus 116 in~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~ 150 (184) T d1ygya1 116 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITG 150 (184) T ss_dssp BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC T ss_conf 06999751188756998343132404899998753 No 8 >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Probab=14.07 E-value=24 Score=15.01 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=17.8 Q ss_pred CCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHH Q ss_conf 9639999999987664---22541044899977568 Q gi|254781212|r 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEE 33 (109) Q Consensus 1 mvnfrkladmikskvl---srgytvdsdalarqlee 33 (109) |+|...+.-|-+..++ +||-.||.+||.+-|++ T Consensus 114 li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~ 149 (199) T d1dxya1 114 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS 149 (199) T ss_dssp SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT T ss_pred CCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC T ss_conf 125887622477428995164766426888989863 No 9 >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Probab=11.98 E-value=31 Score=14.35 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=18.5 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH Q ss_conf 963999999998766---422541044899977568 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEE 33 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqlee 33 (109) |+|-..|.-|-+..+ .+||-.||.++|.+-|++ T Consensus 113 li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~ 148 (188) T d1sc6a1 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALAS 148 (188) T ss_dssp CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT T ss_pred HCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf 106999960799978997672786410899999976 No 10 >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=10.67 E-value=52 Score=13.05 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH Q ss_conf 9999999987664225410--44899977568889988877764078860510112 Q gi|254781212|r 4 FRKLADMIKSKVLSRGYTV--DSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDL 57 (109) Q Consensus 4 frkladmikskvlsrgytv--dsdalarqleederrirhykhvystpegrfvltdl 57 (109) +++|++++++..-+-.-+. |...+|--.-.=..-+||| |+||.++.+| T Consensus 394 lk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~------P~gr~il~~l 443 (477) T d1ho8a_ 394 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL------PESIDVLDKT 443 (477) T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC------TTHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC------CCHHHHHHHC T ss_conf 9999999862044555545788233313350077999978------5336799882 Done!