Query         gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:42:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781212.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f8aa1 c.47.1.10 (A:12-195) G  50.0     7.1 0.00052   18.1   3.3   33   72-104    16-51  (184)
  2 d1j4aa1 c.2.1.4 (A:104-300) D-  23.4      13 0.00095   16.5   1.1   34    1-34    113-149 (197)
  3 d2naca1 c.2.1.4 (A:148-335) Fo  18.1      11 0.00078   17.0  -0.3   33    1-33    117-152 (188)
  4 d1gdha1 c.2.1.4 (A:101-291) D-  16.6      14   0.001   16.3   0.0   34    1-34    120-156 (191)
  5 d12asa_ d.104.1.1 (A:) Asparag  16.1      25  0.0018   14.9   1.2   19   16-34    247-265 (327)
  6 d1mx3a1 c.2.1.4 (A:126-318) Tr  15.7      14 0.00099   16.4  -0.2   33    2-34    122-157 (193)
  7 d1ygya1 c.2.1.4 (A:99-282) Pho  14.8      14   0.001   16.3  -0.3   32    2-33    116-150 (184)
  8 d1dxya1 c.2.1.4 (A:101-299) D-  14.1      24  0.0017   15.0   0.7   33    1-33    114-149 (199)
  9 d1sc6a1 c.2.1.4 (A:108-295) Ph  12.0      31  0.0023   14.4   0.7   33    1-33    113-148 (188)
 10 d1ho8a_ a.118.1.9 (A:) Regulat  10.7      52  0.0038   13.0   3.6   48    4-57    394-443 (477)

No 1  
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.98  E-value=7.1  Score=18.05  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             HHEEEEECCCCEEEEEEECCCCCC---HHHHHHHHC
Q ss_conf             000101016632568873146865---999999862
Q gi|254781212|r   72 AHQLALLEGKRSLAVHIASNCGLS---FERIVQMYS  104 (109)
Q Consensus        72 ahqlallegkrslavhiasncgls---ferivqmys  104 (109)
                      ...|.-..||--|.|..||.||..   ++.+.++|.
T Consensus        16 ~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~   51 (184)
T d2f8aa1          16 PVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQR   51 (184)
T ss_dssp             CEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHH
T ss_pred             EECHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             846899299889999954668765555079997545


No 2  
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}
Probab=23.36  E-value=13  Score=16.53  Aligned_cols=34  Identities=41%  Similarity=0.570  Sum_probs=22.2

Q ss_pred             CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH
Q ss_conf             963999999998766---4225410448999775688
Q gi|254781212|r    1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED   34 (109)
Q Consensus         1 mvnfrkladmikskv---lsrgytvdsdalarqleed   34 (109)
                      |+|-..++.|-+..+   .+||-.||.+||.+.|++.
T Consensus       113 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  149 (197)
T d1j4aa1         113 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  149 (197)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             3458998630774279734743110169999998536


No 3  
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=18.14  E-value=11  Score=17.04  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=18.1

Q ss_pred             CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH
Q ss_conf             963999999998766---422541044899977568
Q gi|254781212|r    1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEE   33 (109)
Q Consensus         1 mvnfrkladmikskv---lsrgytvdsdalarqlee   33 (109)
                      |+|...++-|-+.-+   .+||-.||.+||.+.|++
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~  152 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALES  152 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             327999985799988996271655129999999857


No 4  
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=16.58  E-value=14  Score=16.33  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH
Q ss_conf             963999999998766---4225410448999775688
Q gi|254781212|r    1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED   34 (109)
Q Consensus         1 mvnfrkladmikskv---lsrgytvdsdalarqleed   34 (109)
                      |+|-..++-|-+.-+   .+||-.||.+||..-|++.
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g  156 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG  156 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EECHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             5268886284876079965786301038999999839


No 5  
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]}
Probab=16.10  E-value=25  Score=14.90  Aligned_cols=19  Identities=42%  Similarity=0.469  Sum_probs=15.5

Q ss_pred             HHCCCCCCHHHHHHHHHHH
Q ss_conf             4225410448999775688
Q gi|254781212|r   16 LSRGYTVDSDALARQLEED   34 (109)
Q Consensus        16 lsrgytvdsdalarqleed   34 (109)
                      -|-|..||.++|.+||+..
T Consensus       247 SSMGIRVd~~~L~~QL~~~  265 (327)
T d12asa_         247 SSMGIRVDADTLKHQLALT  265 (327)
T ss_dssp             EEEEEBCCHHHHHHHHHHH
T ss_pred             ECCEEEECHHHHHHHHHHC
T ss_conf             3563688899999999975


No 6  
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Probab=15.71  E-value=14  Score=16.42  Aligned_cols=33  Identities=33%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH
Q ss_conf             63999999998766---4225410448999775688
Q gi|254781212|r    2 VNFRKLADMIKSKV---LSRGYTVDSDALARQLEED   34 (109)
Q Consensus         2 vnfrkladmikskv---lsrgytvdsdalarqleed   34 (109)
                      +|...++-|-+..+   .+||-.||.+||.+-|++.
T Consensus       122 i~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  157 (193)
T d1mx3a1         122 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  157 (193)
T ss_dssp             BSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCEEEECCCCEEECHHHHHHHHHCC
T ss_conf             668997323999769943782299499999999729


No 7  
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.81  E-value=14  Score=16.32  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=16.3

Q ss_pred             CCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH
Q ss_conf             63999999998766---422541044899977568
Q gi|254781212|r    2 VNFRKLADMIKSKV---LSRGYTVDSDALARQLEE   33 (109)
Q Consensus         2 vnfrkladmikskv---lsrgytvdsdalarqlee   33 (109)
                      +|-..+.-|-+.-+   .+||-.||.+||...|++
T Consensus       116 in~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~  150 (184)
T d1ygya1         116 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITG  150 (184)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             06999751188756998343132404899998753


No 8  
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Probab=14.07  E-value=24  Score=15.01  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=17.8

Q ss_pred             CCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHH
Q ss_conf             9639999999987664---22541044899977568
Q gi|254781212|r    1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEE   33 (109)
Q Consensus         1 mvnfrkladmikskvl---srgytvdsdalarqlee   33 (109)
                      |+|...+.-|-+..++   +||-.||.+||.+-|++
T Consensus       114 li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~  149 (199)
T d1dxya1         114 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS  149 (199)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             CCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             125887622477428995164766426888989863


No 9  
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=11.98  E-value=31  Score=14.35  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=18.5

Q ss_pred             CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHH
Q ss_conf             963999999998766---422541044899977568
Q gi|254781212|r    1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEE   33 (109)
Q Consensus         1 mvnfrkladmikskv---lsrgytvdsdalarqlee   33 (109)
                      |+|-..|.-|-+..+   .+||-.||.++|.+-|++
T Consensus       113 li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~  148 (188)
T d1sc6a1         113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALAS  148 (188)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred             HCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             106999960799978997672786410899999976


No 10 
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.67  E-value=52  Score=13.05  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHH
Q ss_conf             9999999987664225410--44899977568889988877764078860510112
Q gi|254781212|r    4 FRKLADMIKSKVLSRGYTV--DSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDL   57 (109)
Q Consensus         4 frkladmikskvlsrgytv--dsdalarqleederrirhykhvystpegrfvltdl   57 (109)
                      +++|++++++..-+-.-+.  |...+|--.-.=..-+|||      |+||.++.+|
T Consensus       394 lk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~------P~gr~il~~l  443 (477)
T d1ho8a_         394 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL------PESIDVLDKT  443 (477)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC------TTHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC------CCHHHHHHHC
T ss_conf             9999999862044555545788233313350077999978------5336799882


Done!