RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781212|ref|YP_003065625.1| hypothetical protein
CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)



>1gut_A Mopii, molybdate binding protein II; molbindin; 1.5A
          {Clostridium pasteurianum} (A:)
          Length = 68

 Score = 27.3 bits (61), Expect = 0.75
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 57 LMVEGG--LLSSVSNDSAHQLALLEGKR------SLAVHIAS 90
          L + GG  + S +S DS  +L + EG        S  V I +
Sbjct: 27 LEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68


>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
          ATP-binding, nucleotide-binding, membrane,
          transmembrane, transport protein; 3.00A {Methanosarcina
          acetivorans} (A:275-342)
          Length = 68

 Score = 27.3 bits (61), Expect = 0.83
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 47 TPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAV 86
             G  V   +     L   ++  SA ++ L  G +  A 
Sbjct: 25 WVLGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYAR 64


>2z00_A Dihydroorotase; zinc binding protein, hydrolase,
           metal-binding, pyrimidine biosynthesis, structural
           genomics, NPPSFA; 2.42A {Thermus thermophilus HB8}
           (A:1-50,A:319-426)
          Length = 158

 Score = 27.1 bits (60), Expect = 0.87
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 20/81 (24%)

Query: 47  TPEGRFVLTDLMVEGGLLSSVSNDSAHQ-------------------LALLEGKRSLAVH 87
              G     D+++  G + S+    A Q                   +  LE    L   
Sbjct: 11  DARGERGPADVLIGEGRILSLEGGEAKQVVDGTGCFLAPGLLRAPFGIPSLEVAFPLLYT 70

Query: 88  IASNCG-LSFERIVQMYSDNP 107
                     +R+V++++D P
Sbjct: 71  ELHLKRGFPLQRLVELFTDGP 91


>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis;
          1.65A {Azotobacter vinelandii} (A:66-137)
          Length = 72

 Score = 26.9 bits (60), Expect = 1.1
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 47 TPEGRFVLTDLMVEGG--LLSSVSNDSAHQLALLEGKRSLAV 86
                    L ++GG  + S V+ ++  +L L  G  + AV
Sbjct: 27 ETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAV 68


>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve
           agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta}
           PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A
           1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A*
           3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A
           ... (A:)
          Length = 330

 Score = 26.1 bits (55), Expect = 1.8
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 83  SLAVHIASNCGLSFERIVQMYSDNPR 108
              +      G+  E +  +   NP 
Sbjct: 296 LRVIPFLREKGVPQETLAGITVTNPA 321


>1fr3_A MOP, molybdate/tungstate binding protein; molybdate
          homeostasis, metal binding protein; 1.50A {Sporomusa
          ovata} (A:)
          Length = 67

 Score = 26.1 bits (58), Expect = 1.8
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 47 TPEGRFVLTDLMVEGG-LLSSVSNDSAHQLALLEGKRSLAV 86
                    +  +G  L+++++ DS   L L+ G +  A+
Sbjct: 17 VKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTAL 57


>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural
           genomics, TM0814, JCSG, PSI, protein structure
           initiative; 2.50A {Thermotoga maritima} (A:57-344)
          Length = 288

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 19  GYTVDSDALARQLEEDERRIRHYKHVYSTPEGR--FVLTDLMVEGGLLSSVSNDSAHQLA 76
               D   L+R+  +   +++    +    +      L D     G L     D   +L 
Sbjct: 181 ELICDGVHLSREXVKLVYKVKKANGIVLVTDSISAAGLKDGTTTLGDLVVKVKDGVPRLE 240

Query: 77  ---LLEGKRSLAV---HIASNCGLSFERIVQMYSDNPR 108
              L       +    +     G S   + ++ S N  
Sbjct: 241 DGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSC 278


>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related
           protein; TIM barrel, binuclear zinc, protein structure
           initiative II (PSI II); 1.80A {Rhodobacter sphaeroides
           2} (A:)
          Length = 364

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 85  AVHIASNCGLSFERIVQMYSDNPR 108
            +      GL    +  +   NPR
Sbjct: 326 FLPRLRRHGLDDAALETLXVTNPR 349


>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
           acetyleglucosamine-6-phosphate, carbohydrate metabolism,
           hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
           (A:59-358)
          Length = 300

 Score = 25.6 bits (55), Expect = 2.4
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 7/74 (9%)

Query: 38  IRHYKHVYSTPEGRFVLT--DLMVEGGLLSSVSNDSAHQ-LALLEGKRSLAVHIASNCGL 94
           I          +G +      + V G          A   L + EG R    H+      
Sbjct: 221 ITDSMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLAGSILKMNEGAR----HMREFTNC 276

Query: 95  SFERIVQMYSDNPR 108
           S+  I  + S+N  
Sbjct: 277 SWTDIANITSENAA 290


>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
           S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
           one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
           pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
          Length = 163

 Score = 24.8 bits (53), Expect = 3.8
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 2/49 (4%)

Query: 3   NFRKLADMIKSKVLSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGR 51
           + + +        +    +    A  RQ +     I+        P+G+
Sbjct: 104 HMKAMRHNAIVCNIGHFDSEIDVASTRQYQ--WENIKPQVDHIIFPDGK 150


>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET:
           NAD; 2.00A {Phormidium lapideum} (A:124-315)
          Length = 192

 Score = 24.4 bits (52), Expect = 5.6
 Identities = 3/33 (9%), Positives = 6/33 (18%)

Query: 16  LSRGYTVDSDALARQLEEDERRIRHYKHVYSTP 48
           ++       + L                 Y  P
Sbjct: 143 VAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVP 175


>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus,
           viral protein; 2.70A {Equine infectious anemia virus}
           (A:1-137)
          Length = 137

 Score = 24.2 bits (52), Expect = 5.9
 Identities = 1/15 (6%), Positives = 6/15 (40%)

Query: 94  LSFERIVQMYSDNPR 108
            +    +++    P+
Sbjct: 120 EAMSEGIKVMIGKPK 134


>2z4i_A Copper homeostasis protein CUTF; outer memblane
          lipoprotein, beta barrel, OB-fold, 3D domain swapping,
          signaling protein activator; HET: P6G; 2.60A
          {Escherichia coli} PDB: 2z4h_A* (A:114-233)
          Length = 120

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 20 YTVDSDALARQLEEDERRIRH--YKHVYSTPEGRFVLTDLMVEGG 62
          + V ++A   +LE      R    K V  + EG F L      G 
Sbjct: 38 FXVANNA---ELERSYLAARGHSEKPVLLSVEGHFTLEGNPDTGA 79


>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
           metalloprotease; HET: KCX; 1.65A {Escherichia coli}
           (A:64-347)
          Length = 284

 Score = 24.4 bits (51), Expect = 6.1
 Identities = 6/70 (8%), Positives = 16/70 (22%)

Query: 38  IRHYKHVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFE 97
           I              + +D            N +   +A  E        +  +   S  
Sbjct: 204 IARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSIS 263

Query: 98  RIVQMYSDNP 107
             ++  + + 
Sbjct: 264 DALRPLTSSV 273


>1zt2_A DNA primase small subunit; heterodimeric complex,
          replication, transferase; HET: DNA; 3.33A {Sulfolobus
          solfataricus} (A:97-106,A:143-236)
          Length = 104

 Score = 24.0 bits (52), Expect = 7.6
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 18 RGY--TVDSDALARQLEEDERR-IRHYKHVYSTPEGRFVLTD 56
          RG+   VD       L+ DER+ I  Y      P       +
Sbjct: 44 RGFHVQVDCYGNCALLDSDERKEIAEYVMGIGVPGYPGGSEN 85


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 783,158
Number of extensions: 30471
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 25
Length of query: 109
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 44
Effective length of database: 2,758,724
Effective search space: 121383856
Effective search space used: 121383856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)