RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781212|ref|YP_003065625.1| hypothetical protein
CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
Length = 608
Score = 29.4 bits (65), Expect = 0.19
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 20 YTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLE 79
D +A+ +R H + PE L L ++ ++D L
Sbjct: 244 LVSGEDLMAKLRAGLTIELRG-SHDHLLPEFVAALNTLGHLPQTVTLCTDDVFPDDLLQG 302
Query: 80 GKRSLAVHIASNCGLSFERIVQMYSDNP 107
G V GL E ++ + N
Sbjct: 303 GGLDDVVRRLVRYGLKPEWALRAATLNA 330
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 28.0 bits (62), Expect = 0.56
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEEDERRIRHY 41
M N + + K ++ +RG ++ A+ + + I Y
Sbjct: 237 MFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV--ESGHIGGY 278
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.7 bits (60), Expect = 0.70
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 6/23 (26%)
Query: 63 LLSSV---SNDSAHQLAL---LE 79
L +S+ ++DSA LA+ +E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
Score = 25.0 bits (53), Expect = 4.5
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 11/29 (37%)
Query: 81 KRSLAVHIASNCGLSFERIVQMYSDN--P 107
K++L AS +++Y+D+ P
Sbjct: 19 KQALKKLQAS---------LKLYADDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 27.6 bits (61), Expect = 0.76
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 45/105 (42%)
Query: 7 LADMIKS--KVLSRGYTVDSDALARQLEEDERRIRHYKH---VY-------STPEGRFVL 54
+ D+IK + LS L R + + + +TP+
Sbjct: 184 VGDLIKFSAETLSE--------LIR---TTLDAEKVFTQGLNILEWLENPSNTPD----- 227
Query: 55 TDLMVEGGLLSS-VSNDSAHQLALLEGKRSLAVHIASNC---GLS 95
D LLS +S L+ G LA H G +
Sbjct: 228 KDY-----LLSIPIS------CPLI-GVIQLA-HYVVTAKLLGFT 259
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus HB8}
Length = 426
Score = 26.3 bits (56), Expect = 1.7
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 47 TPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGK 81
G D+++ G + S+ A Q+ G
Sbjct: 11 DARGERGPADVLIGEGRILSLEGGEAKQVVDGTGC 45
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 25.7 bits (55), Expect = 2.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 93 GLSFERIVQMYSDNPR 108
G+S E I + +NP+
Sbjct: 310 GVSKEAIFDILVNNPK 325
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A
{Escherichia coli} SCOP: d.104.1.1 PDB: 11as_A*
Length = 330
Score = 25.4 bits (56), Expect = 3.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 17 SRGYTVDSDALARQLEE--DERRIRHYKH 43
S G VD+D L QL DE R+ H
Sbjct: 251 SMGIRVDADTLKHQLALTGDEDRLELEWH 279
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 25.2 bits (54), Expect = 4.0
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 19 GYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVL 54
G++ D + L +R I Y+ + + ++
Sbjct: 1409 GFSPDVEDLKTLSTGVDRYISKYEMNRDSNKNTLII 1444
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 25.1 bits (53), Expect = 4.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 93 GLSFERIVQMYSDNPR 108
G+ E + + NP
Sbjct: 306 GVPQETLAGITVTNPA 321
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: SSA; 2.60A
{Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A*
2zr3_A
Length = 455
Score = 24.7 bits (53), Expect = 4.5
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 4 FRKLADMIKSKVLSRGYTVDSDALARQLEEDERR 37
R+ +++K+ ++ RG + L+ D
Sbjct: 7 IRENPELVKNDLIKRGELEKVKWVDEILKLDTEW 40
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP
pyrophosphatase, dimeric, ligand complex, magnesium
IONS, pathogen, drug target; HET: DUN; 1.65A
{Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Length = 229
Score = 24.7 bits (53), Expect = 4.9
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 23 DSDALARQLEEDERRIRHYKHVYSTPEGRF--VLTDLMVEGGLLSSVSNDSAHQLALLEG 80
D A+A ++ K EG +L D+ + S + L+
Sbjct: 97 DFKAIATEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFT 156
Query: 81 KRSLAVHIASNCGLSFERIVQMY 103
+A CGL+ E + + Y
Sbjct: 157 -------LAIKCGLNLEILYKTY 172
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium,
SGC, oxidoreductase, polymorphism, secreted, selenium,
selenocysteine; 1.85A {Homo sapiens}
Length = 207
Score = 24.8 bits (53), Expect = 5.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 75 LALLEGKRSLAVHIASNCGLSFER 98
GK L V++AS GL+ +
Sbjct: 33 FKQYAGKYVLFVNVASYGGLTGQY 56
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 24.8 bits (53), Expect = 5.4
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 8/33 (24%)
Query: 20 YTVDSDALARQLEEDERRIRHYKHVYSTPEGRF 52
+ +A L+ H+Y GR
Sbjct: 357 FVPLLAKIAEHLKT--------HHIYIINNGRI 381
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on
PAIR of basic residues, complement alternate pathway,
complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB:
3kls_A* 3km9_A* 1xwe_A
Length = 1676
Score = 24.5 bits (52), Expect = 5.6
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 19 GYTVDSDALARQLEEDERRIRHYK 42
G + + + L +E ++ Y+
Sbjct: 1431 GISANEEDLKALVEGVDQLFTDYQ 1454
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis,
metal binding protein; 1.50A {Sporomusa ovata} SCOP:
b.40.6.1
Length = 67
Score = 24.7 bits (54), Expect = 5.9
Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 53 VLTDLMVEGG---LLSSVSNDSAHQLALLEGKR------SLAVHIA 89
V+ ++++ L+++++ DS L L+ G + + + +
Sbjct: 21 VMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVL 66
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 24.6 bits (53), Expect = 6.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 25 DALARQLEEDERRIRHY 41
D L QL+ DE R++
Sbjct: 291 DQLVDQLKADEEVTRNW 307
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain,
complement system, convertase, complement alternate
pathway, complement pathway; HET: NAG P6G; 2.20A {Naja
kaouthia} PDB: 3frp_B* 3hs0_C*
Length = 379
Score = 24.5 bits (53), Expect = 6.5
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 19 GYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVL 54
G+ D++ L R + +R I Y+ + + V+
Sbjct: 126 GFLPDAEDLTRLSKGVDRYISRYEVDNNMAQKVAVI 161
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosphate ION, oxidoreductase; HET: NAD TLA;
2.30A {Pseudomonas aeruginosa}
Length = 380
Score = 24.5 bits (52), Expect = 6.8
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEEDERRIRHYKHVYSTP 48
+++ +LA + L SRG VD+ AL R LE P
Sbjct: 188 LLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP 238
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 24.4 bits (53), Expect = 7.0
Identities = 3/46 (6%), Positives = 12/46 (26%)
Query: 61 GGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERIVQMYSDN 106
+ + ++ + G + +I+ +N
Sbjct: 73 NAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNN 118
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A
{Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB:
1ser_A* 1set_A* 1sry_A
Length = 421
Score = 24.1 bits (51), Expect = 7.2
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 4 FRKLADMIKSKVLSRGYTVDSDALARQLEEDERR 37
R+ ++ + +G +D +AL L D
Sbjct: 7 LRQEPEVFHRAIREKGVALDLEAL---LALDREV 37
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 24.2 bits (52), Expect = 7.3
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEEDERRIRHY 41
++N M ++ +R +D+ A+ L+ ++
Sbjct: 214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK--SGKLAGV 255
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A
{Streptococcus pneumoniae} SCOP: c.14.1.1
Length = 218
Score = 24.2 bits (52), Expect = 7.4
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 43 HVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERIVQM 102
+ P +++ M G + ++ + LL+ + +L +A N G S E++
Sbjct: 129 KRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD 188
>1gut_A Mopii, molybdate binding protein II; molbindin; 1.5A {Clostridium
pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A
1gug_A
Length = 68
Score = 24.2 bits (53), Expect = 7.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 63 LLSSVSNDSAHQLALLEGKRSLAV 86
+ S +S DS +L + EG AV
Sbjct: 35 ITSIISLDSVEELGVKEGAELTAV 58
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 24.2 bits (52), Expect = 8.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 17 SRGYTVDSDALARQLEEDERRIRHY 41
RG VD+ AL +L +
Sbjct: 210 CRGPVVDNAALLARLN--AGQPLSV 232
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 23.8 bits (51), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 QLALLEGKRSLAVHIASNCGLSFERIVQMYSD 105
+LA+ + SLAVHIA + + E I ++
Sbjct: 157 KLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRT 188
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.134 0.372
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 887,012
Number of extensions: 35382
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 33
Length of query: 109
Length of database: 5,693,230
Length adjustment: 73
Effective length of query: 36
Effective length of database: 3,923,418
Effective search space: 141243048
Effective search space used: 141243048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)