RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781212|ref|YP_003065625.1| hypothetical protein
CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 27.5 bits (61), Expect = 0.31
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 18/70 (25%)
Query: 38 IRHYKHVYSTPEGRFVLTDLMVEGG-------------LLSSVSNDSAHQLALLEGKRSL 84
+R +Y +L L + G + + H LA L G SL
Sbjct: 128 MRTNGDLYQGAIFLLILASLALFAGWLHLQPKFRPSLSWFKNAESRLNHHLAGLFGVSSL 187
Query: 85 A-----VHIA 89
A +H+A
Sbjct: 188 AWAGHLIHVA 197
>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 25.5 bits (54), Expect = 1.2
Identities = 9/92 (9%), Positives = 23/92 (25%)
Query: 16 LSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQL 75
+G T+D + + I + +D N + +
Sbjct: 183 ARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGV 242
Query: 76 ALLEGKRSLAVHIASNCGLSFERIVQMYSDNP 107
A E + + S ++ + +
Sbjct: 243 AGFETLLETVQVLVKDYDFSISDALRPLTSSV 274
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Clostridium pasteurianum, MOP II [TaxId: 1501]}
Length = 67
Score = 25.4 bits (56), Expect = 1.4
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 57 LMVEGG--LLSSVSNDSAHQLALLEGKR------SLAVHIAS 90
L + GG + S +S DS +L + EG S V I +
Sbjct: 26 LEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 67
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
[TaxId: 562]}
Length = 327
Score = 25.4 bits (56), Expect = 1.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 17 SRGYTVDSDALARQLEE--DERRIRHYKH 43
S G VD+D L QL DE R+ H
Sbjct: 248 SMGIRVDADTLKHQLALTGDEDRLELEWH 276
>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 73
Score = 25.1 bits (55), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 53 VLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAV 86
V L L + V+ +SA L L GK +AV
Sbjct: 25 VDILLGGGDKLAAVVTLESARSLQLAAGKEVVAV 58
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 25.1 bits (53), Expect = 1.9
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 93 GLSFERIVQMYSDNPR 108
G+ E + + NP
Sbjct: 306 GVPQETLAGITVTNPA 321
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 68
Score = 24.6 bits (54), Expect = 2.6
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 LMVEGG--LLSSVSNDSAHQLALLEGKRSLAV 86
L ++GG + S V+ ++ +L L G + AV
Sbjct: 26 LALQGGTEITSMVTKEAVAELGLKPGASASAV 57
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 265
Score = 24.5 bits (53), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 33 EDERRIRHYKHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
+ER + HY P G+ L TD+ VEG L+ V+N + Q+
Sbjct: 44 VEERGVPHYNPDIGVPLGQRKLMSYQVSGTDVFVEGDDLTFVNNAAMQQM 93
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Sporomusa ovata [TaxId: 2378]}
Length = 67
Score = 24.2 bits (53), Expect = 3.0
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 47 TPEGRFVLTDLMVEGG-LLSSVSNDSAHQLALLEGKR------SLAVHIA 89
+ +G L+++++ DS L L+ G + + + +
Sbjct: 17 VKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVL 66
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
coli [TaxId: 562]}
Length = 264
Score = 24.2 bits (51), Expect = 3.0
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 76 ALLEGKRSLAVHIASNCGLSFERIVQMYSDN 106
L R+LA A GL + Y D
Sbjct: 221 LLAAKDRTLAAATAKAEGLYLVAVD--YPDR 249
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 24.1 bits (52), Expect = 3.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 33 EDERRIRHYKHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
+R I Y TP G+ VL TD VEG L V+N + Q+
Sbjct: 47 AAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQM 96
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Campylobacter jejuni [TaxId: 197]}
Length = 229
Score = 23.9 bits (51), Expect = 4.2
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 20 YTVDSDALARQLEEDERRIRHYKHVYSTPEGRF--VLTDLMVEGGLLSSVSNDSAHQLAL 77
D A+A ++ K EG +L D+ + S + L+
Sbjct: 94 NNKDFKAIATEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLST 153
Query: 78 LEGKRSLAVHIASNCGLSFERIVQMY 103
+A CGL+ E + + Y
Sbjct: 154 YFT-------LAIKCGLNLEILYKTY 172
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 23.8 bits (51), Expect = 4.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 74 QLALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109
+LA+ + SLAVHIA + + E I ++ +
Sbjct: 150 KLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPC 185
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 23.4 bits (49), Expect = 5.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 32 EEDERRIRHYKHVYSTPEGRF 52
+E R+R VY+ GR
Sbjct: 355 KEQVLRLREEFGVYAVASGRV 375
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 23.4 bits (49), Expect = 5.7
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 83 SLAVHIASNCGLSFERIVQMYSDNPR 108
A+ + +S +++++M++ NP
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPA 302
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 23.0 bits (48), Expect = 6.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 32 EEDERRIRHYKHVYSTPEGRF 52
E +RI+ +Y + R
Sbjct: 352 PEQVKRIKEEFGIYMVGDSRI 372
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 23.0 bits (48), Expect = 6.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 32 EEDERRIRHYKHVYSTPEGRF 52
+ + + KH+Y P GR
Sbjct: 367 PKQVEYLINQKHIYLLPSGRI 387
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 23.0 bits (48), Expect = 6.7
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 75 LALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109
L L GK L ++AS G + QM R
Sbjct: 19 LGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRL 53
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 23.2 bits (49), Expect = 6.8
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 25 DALARQLEEDERRIRHYKHVYSTPEGRF 52
+ + RQ+ +R + +++ + GR
Sbjct: 21 ECIFRQMPATQRVLFLWRNADTVVIGRA 48
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 23.0 bits (49), Expect = 7.2
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 4 FRKLADMIKSKVLSRGYTVDSDALARQLEEDERR 37
R+ ++ + +G +D +AL L D
Sbjct: 7 LRQEPEVFHRAIREKGVALDLEAL---LALDREV 37
>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 334
Score = 23.0 bits (49), Expect = 7.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 73 HQLALLEGKRSLAVHIASNCGLSFERIVQMYSDNP 107
+LAL + SLAV+++ + + E I +M P
Sbjct: 131 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLP 165
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 23.0 bits (48), Expect = 7.7
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 32 EEDERRIRHYKHVYSTPEGRF 52
R+R VY GR
Sbjct: 356 AAQVDRLREEFGVYLIASGRM 376
>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
Methanosarcina barkeri [TaxId: 2208]}
Length = 282
Score = 22.6 bits (48), Expect = 8.3
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 33 EDERRIRHY--KHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
++R I Y P G+ + TD++ E L V+N + Q+
Sbjct: 59 AEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDLHYVNNAAMQQM 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.372
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 381,731
Number of extensions: 15170
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 28
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)