BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781212|ref|YP_003065625.1| hypothetical protein
CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 109

 Score =  225 bits (573), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MVNFRKLADMIKSKVLSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVE 60
           MVNFRKLADMIKSKVLSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVE
Sbjct: 1   MVNFRKLADMIKSKVLSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVE 60

Query: 61  GGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109
           GGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY
Sbjct: 61  GGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109


>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score = 23.9 bits (50), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 45  YSTPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIASNCGLSFERI 99
           ++ P  R +L      GG     S+   H   +++ KR L      NCG ++E +
Sbjct: 128 FALPNARILLHQ--PSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180


>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score = 23.5 bits (49), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 48  PEGRFVLTDLMVEGGLLSS 66
           P+GR +L D + E GLL++
Sbjct: 149 PKGRIILRDRLWEIGLLAA 167


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 23.1 bits (48), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 86  VHIASNCGLSFER 98
           VH   +CG++FE+
Sbjct: 850 VHAGQDCGMAFEK 862


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 22.7 bits (47), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 38  IRHYKHVYSTPEGRF 52
           IR YKHVYS  E + 
Sbjct: 239 IREYKHVYSLDEKKL 253


>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
          Length = 335

 Score = 22.3 bits (46), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 16  LSRGYTVDSDALARQLEE 33
           LS+  TVDSD LAR+  E
Sbjct: 278 LSQIDTVDSDTLARKKNE 295


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,737
Number of Sequences: 1233
Number of extensions: 2238
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 328,796
effective HSP length: 62
effective length of query: 47
effective length of database: 252,350
effective search space: 11860450
effective search space used: 11860450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 32 (16.9 bits)