HHsearch alignment for GI: 254781213 and conserved domain: pfam05133
>pfam05133 Phage_prot_Gp6 Phage portal protein, SPP1 Gp6-like. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, Gp6 participates in the procapsid assembly reaction. This family also includes family Phage_min_cap, pfam05126.
Probab=97.28 E-value=0.015 Score=35.17 Aligned_cols=265 Identities=13% Similarity=0.005 Sum_probs=132.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEEHHHEEEEECC--CCCEEEEEEEECCCHHHHHHHC
Q ss_conf 23147388999999998754103322216766654446605888655446661089--8887153200036977866631
Q gi|254781213|r 113 RSRSGFVGCLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNH--QNVVDSVYREFTFTVDQIVSKW 190 (556)
Q Consensus 113 ~~~snf~~~~~e~~~dL~~~Gta~l~i~~d~~~~~~~~~~rf~~~pl~~~~i~~d~--~G~vd~i~r~~~~t~~ql~~~f 190 (556)
T Consensus 87 ~~~n~~~~~~~~~~~~a~~~G~ay~~~y~d~d-----g~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~----- 156 (435)
T pfam05133 87 LDANDFDDKLSELHKDALIYGRAYELVYIDED-----GEPRIRVVSPEQAFPIYDDTIDRELAAAVRYYTDKDGD----- 156 (435)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCEEEEEEECCC-----CCEEEEEECCCEEEEEEECCCCCCEEEEEEEEEEECCC-----
T ss_conf 97267877999999999861757999998899-----97899998768489999789887635999999973684-----
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-EECCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 522357256654103555715666888535765655444532127765421376-4510178665874555114148721
Q gi|254781213|r 191 GDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVSVDEN-RFFEEKQIATFPYIVGRYRVRADEI 269 (556)
Q Consensus 191 g~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~~~~~sv~~~~~~~-~vl~e~g~~e~P~~~~Rw~~~~ge~ 269 (556)
T Consensus 157 -------~~~-~--~e~y~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~vPvv~f~Nn--~~~~ 210 (435)
T pfam05133 157 -------KTG-Y--YELYTDDEVYTYVREGG--------------GDLIEVDVIGERIPPHEFGRVPVVEFNNN--DLRS 210 (435)
T ss_pred -------EEE-E--EEEEECCEEEEEEECCC--------------CCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCC
T ss_conf -------589-9--99996898999994798--------------64112453345666688885265986258--5445
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--C-EECCCCCCCCCCCCCCCCCCCCCC-CCCHHH
Q ss_conf 020269975889999999999999999975198689327863043--1-002476433245887655422000-122026
Q gi|254781213|r 270 YGRSPAMEALPTIRRLNETVNELAQFGRLSLHPPTIAVSEAKQRN--F-DLKPGYMNIGALSREGRSLFQPVQ-FGNPLP 345 (556)
Q Consensus 270 YGrgp~~~aL~D~k~Ln~l~~~~l~~~~~~~~p~~~v~~~~~~~~--~-~l~pg~~~~~~~~~~~~~~~~p~~-~g~~~~ 345 (556)
T Consensus 211 ~G~sd~e~v~~liDa~d~~~s~~~n~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 290 (435)
T pfam05133 211 PGLSDLEPVKSLIDAYDKTLSEFANDFYDFPRAILVLKGYGEDDDEFVKDLKDAKLIRLLDGAEDDGDAKFLTKQFPVAS 290 (435)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHCCCEECCCCCCCCCCEEEEECCCCHHH
T ss_conf 68651777699999999998387788987420037741777665156787775143011366678997048805688689
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999997422210132466677779999999999999778887788789999999999999
Q gi|254781213|r 346 YHEELNRLKESIRSLFLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDIL 414 (556)
Q Consensus 346 ~~~~i~~~~~~I~~~f~~d~~~~~~~~~~~TAtEv~~r~~e~~~~Lg~v~~rl~~E~l~Pli~r~~~il 414 (556)
T Consensus 291 ~e~~~~~l~~~i~~~s~~~~~~~~~f~~n~Sg~Alk~~~~~l~~ka-~~~e~~f~~~l~~~~~li~~~~ 358 (435)
T pfam05133 291 LENYLDALKQDIYEFAMVPDLPDEYFGGNASGEALKAKYSLLDLKA-ERKERKFGEALRRLLRLALEIL 358 (435)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999983889999466088740999999998999999-9999999999999999999986