Query gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 556
No_of_seqs 167 out of 535
Neff 7.6
Searched_HMMs 33803
Date Wed Jun 1 23:31:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781213.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2imu_A Structural polyprotein 33.8 22 0.00064 14.3 1.7 24 50-73 6-29 (46)
2 >3gux_A Putative Zn-dependent 22.0 39 0.0012 12.6 3.8 53 241-293 94-146 (314)
3 >1yt3_A Ribonuclease D, RNAse 21.3 41 0.0012 12.5 3.9 30 479-508 17-46 (82)
4 >2krt_A Conserved hypothetical 19.1 45 0.0013 12.2 1.9 50 210-259 4-57 (63)
5 >1h2i_A RAD52, DNA repair prot 18.3 28 0.00084 13.5 -0.1 21 375-395 31-51 (67)
6 >2wpn_B Periplasmic [nifese] h 17.9 32 0.00093 13.2 0.1 26 256-281 50-76 (105)
7 >1dvk_A PRP18; PRE-mRNA splici 15.6 54 0.0016 11.7 4.3 37 100-140 82-118 (173)
8 >3gs9_A Protein GP18; NP_46580 14.3 44 0.0013 12.2 0.1 12 434-445 20-31 (60)
9 >3knu_A TRNA (guanine-N(1)-)-m 13.7 51 0.0015 11.8 0.3 49 257-312 62-113 (188)
10 >1quu_A Human skeletal muscle 13.0 64 0.0019 11.2 4.2 49 471-519 43-103 (110)
No 1
>>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic} (A:)
Probab=33.78 E-value=22 Score=14.28 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 799999999998764188788760
Q gi|254781213|r 50 GSEACIKLSSLLSSLITPPGQKWH 73 (556)
Q Consensus 50 ~~~a~~~lAs~L~~~ltPp~~~WF 73 (556)
-+++++..|.-..|.||||+.|-.
T Consensus 6 ~~r~ir~iA~pVvstlfp~aapl~ 29 (46)
T 2imu_A 6 IIRAIRRIAVPVVSTLFPPAAPLA 29 (46)
T ss_dssp HHHHHHHHSHHHHHHHCSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHC
T ss_conf 999999998999987445520020
No 2
>>3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=21.97 E-value=39 Score=12.59 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=38.7
Q ss_pred CCCCEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13764510178665874555114148721020269975889999999999999
Q gi|254781213|r 241 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELA 293 (556)
Q Consensus 241 ~~~~~vl~e~g~~e~P~~~~Rw~~~~ge~YGrgp~~~aL~D~k~Ln~l~~~~l 293 (556)
..++.++--+-++..|.-...|...++-.||||-..+..+..-.|..+....-
T Consensus 94 ~~~~~i~l~aH~D~vp~~~~~~~~~~~~~~g~Ga~D~~~g~a~~l~~~~~l~~ 146 (314)
T 3gux_A 94 ESKKRILLCAHWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQK 146 (314)
T ss_dssp TCSSEEEEEEECCCCC--------------------CHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHC
T ss_conf 89876699986057766887765344676316602677541999999998622
No 3
>>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} (A:294-375)
Probab=21.26 E-value=41 Score=12.50 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
Q ss_conf 899999999970998546199899999999
Q gi|254781213|r 479 TDRVSRFSLWATNTPAVLIRDTAEVEDIRQ 508 (556)
Q Consensus 479 ~d~~~~~~a~~~Gvp~~~~r~~eev~~~rq 508 (556)
...+++..|+..|||++++-|..++.++-.
T Consensus 17 lk~~v~~~ae~~~i~~ellaskk~l~~ll~ 46 (82)
T 1yt3_A 17 IKSLITDVSETHKISAELLASRRQINQLLN 46 (82)
T ss_dssp HHHHHHHHHHHHTCCHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHCCCHHHHHHHHH
T ss_conf 999999999995949898499999999982
No 4
>>2krt_A Conserved hypothetical membrane lipoprotein; NESG, UUR17A, structural genomics, PSI-2, protein structure initiative; NMR {Ureaplasma parvum} (A:59-121)
Probab=19.09 E-value=45 Score=12.20 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=27.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCE----ECCCCCCCCCCEEE
Q ss_conf 156668885357656554445321277654213764----51017866587455
Q gi|254781213|r 210 RFTIIHAVYPKSLTDKKKDKGNKGFHSKFVSVDENR----FFEEKQIATFPYIV 259 (556)
Q Consensus 210 ~~~v~~~v~pr~~~~~~~~~~~~~~~sv~~~~~~~~----vl~e~g~~e~P~~~ 259 (556)
.++|+...||..++....-..+....-...+...++ .+..+||.+.||+-
T Consensus 4 ~I~iI~~~YP~~~FGSAN~~G~LK~SL~~TDKK~~QV~~K~i~~~GFKsNpyle 57 (63)
T 2krt_A 4 DIKIINFLYPDGDFGSANKNGTLKLSLMLTDKKNNQVYYKLLEVSGFKSNPYLE 57 (63)
T ss_dssp ECCEEEEECSSSCHHHHHHHCEEEEEEEEEETTTCCEEEEEEEEECSCCCSSCC
T ss_pred EEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCC
T ss_conf 159999996479832335546068999986256650899999965501486432
No 5
>>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:1-67)
Probab=18.27 E-value=28 Score=13.49 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 777999999999999977888
Q gi|254781213|r 375 RSAAESMEKTREKGAFVGPLI 395 (556)
Q Consensus 375 ~TAtEv~~r~~e~~~~Lg~v~ 395 (556)
-|+.|+...+..+.+.|||-|
T Consensus 31 yT~~E~~~iq~~L~k~LGPEy 51 (67)
T 1h2i_A 31 YTAEEYQAIQKALRQRLGPEY 51 (67)
T ss_dssp CCHHHHHHHHHHHHCCBCTTT
T ss_pred CCHHHHHHHHHHHHCCCCCHH
T ss_conf 208888999999964247113
No 6
>>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris} (B:1-51,B:429-482)
Probab=17.89 E-value=32 Score=13.21 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.7
Q ss_pred CEEEEEEEECCCCCCC-HHHHHHHHHH
Q ss_conf 7455511414872102-0269975889
Q gi|254781213|r 256 PYIVGRYRVRADEIYG-RSPAMEALPT 281 (556)
Q Consensus 256 P~~~~Rw~~~~ge~YG-rgp~~~aL~D 281 (556)
|=.+..|+..|-+..| .||.+.+|=.
T Consensus 50 pr~PttWN~sPrd~~g~~gp~E~alig 76 (105)
T 2wpn_B 50 PRSASLWNCNPRDDMGQRGAVEEALIG 76 (105)
T ss_dssp CBEEEETTEEEEEEEECHHHHHSCCCC
T ss_pred CCEEEECCEEEEEEEECCCCCCCCCCC
T ss_conf 429995997989999898600255433
No 7
>>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} (A:)
Probab=15.61 E-value=54 Score=11.67 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEC
Q ss_conf 99999999987502314738899999999875410332221
Q gi|254781213|r 100 CDQVTDTLFGFRERSRSGFVGCLQSFYTSVVEFGTGCFYME 140 (556)
Q Consensus 100 L~~v~~~i~~~~~~~~snf~~~~~e~~~dL~~~Gta~l~i~ 140 (556)
|+.+..+++. .....-|...+++|++|. +||++.=|+
T Consensus 82 l~~L~~Iv~~---~~~~r~y~~And~Yl~La-IGna~WPIG 118 (173)
T 1dvk_A 82 LISLATVLYH---LQQPKEINLAVQSYMKLS-IGNVAWPIG 118 (173)
T ss_dssp HHHHHHHHHH---HTSGGGHHHHHHHHHHHH-HTBCCCCSC
T ss_pred HHHHHHHHHH---HHHHCCHHHHHHHHHHHH-HCCCCCCCE
T ss_conf 9999999999---985400899999999987-237887620
No 8
>>3gs9_A Protein GP18; NP_465809.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e} (A:206-265)
Probab=14.28 E-value=44 Score=12.24 Aligned_cols=12 Identities=33% Similarity=0.525 Sum_probs=7.9
Q ss_pred EEEEECCHHHHH
Q ss_conf 688833799998
Q gi|254781213|r 434 LKVEYTSPLFKY 445 (556)
Q Consensus 434 ~~v~y~s~La~a 445 (556)
+.++|+|||+..
T Consensus 20 l~veYtSPla~i 31 (60)
T 3gs9_A 20 SPITYTSPEVEX 31 (60)
T ss_dssp CCEEEECTTHHH
T ss_pred CCEEEECCCCCC
T ss_conf 634751776443
No 9
>>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} (A:1-188)
Probab=13.73 E-value=51 Score=11.84 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=27.9
Q ss_pred EEEEEEEECCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCCC
Q ss_conf 455511414872102026997--5889999999999999999975198-6893278630
Q gi|254781213|r 257 YIVGRYRVRADEIYGRSPAME--ALPTIRRLNETVNELAQFGRLSLHP-PTIAVSEAKQ 312 (556)
Q Consensus 257 ~~~~Rw~~~~ge~YGrgp~~~--aL~D~k~Ln~l~~~~l~~~~~~~~p-~~~v~~~~~~ 312 (556)
|-.-++.++++..||-||||- +=|-.+.|+.+.. ..-+| .....|.|..
T Consensus 62 f~~dkhr~VDD~PyGGG~GMvmk~ePi~~al~~~~~-------~~~~~~vi~lSP~Gk~ 113 (188)
T 3knu_A 62 FANNKHNTVDDTPYGGGPGMLLRADVLGRCIDEVLS-------LHPNTKLMFTSPRGVS 113 (188)
T ss_dssp GC-----CCEECCTTCCSSCEECHHHHHHHHHHHHH-------HCTTCEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHH-------CCCCCEEEEECCCCCC
T ss_conf 378999777556578998725566999999998762-------2788659983589852
No 10
>>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} (A:141-250)
Probab=12.95 E-value=64 Score=11.20 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=34.1
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCC------------HHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78987359899999999970998------------54619989999999999999999999
Q gi|254781213|r 471 PSCMDHMDTDRVSRFSLWATNTP------------AVLIRDTAEVEDIRQQREVQRRVMEE 519 (556)
Q Consensus 471 p~~~d~~d~d~~~~~~a~~~Gvp------------~~~~r~~eev~~~rq~r~~~~q~~qq 519 (556)
-++-..+...+-++.+.+.+|+| ..|-+....|.++-.+|.++-|....
T Consensus 43 ~e~~~i~~l~~ei~~l~~~~~~~~~~~NPYt~~t~e~i~~kW~~v~~lv~~Rd~~Lq~E~~ 103 (110)
T 1quu_A 43 GERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999987653443544220889999999999999999999999999999999
Done!