BLAST/PSIBLAST alignment of GI: 254781213 and GI: 42526662 at iteration 1
>gi|42526662|ref|NP_971760.1| head-to-tail joining protein, putative [Treponema denticola ATCC 35405] Length = 560
>gi|41816855|gb|AAS11641.1| head-to-tail joining protein, putative [Treponema denticola ATCC 35405] Length = 560
 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 214/469 (45%), Gaps = 34/469 (7%)

Query: 51  SEACIKLSSLLSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGF 110
           SE   KL S L      P   W  L  S +  +   Y        V++W +Q    L+  
Sbjct: 64  SEYLKKLVSGLMGYTISPNVTWLKL--SLNNTEMLEYA------GVKDWLEQSEKALY-- 113

Query: 111 RERSRSGFVGCLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQN 170
            E +R+     +  F ++   FG G       +DEK  E  IR++++    +Y++ N   
Sbjct: 114 EEFNRNNLYSQVSLFISNAASFGHGVML----IDEKK-ENSIRFLTIAEPEIYIAENEYG 168

Query: 171 VVDSVYREFTFTVDQIVSKWGDKVLSSKMKSALA--RNENERFTIIHAVYPKSLTDKKK- 227
            +D+V+R F+ TV  I++++G++ +S ++K+     + +N+   I+HAV P+   D+ K 
Sbjct: 169 DIDTVFRYFSMTVKNIIARFGEENVSEQIKNDAKDIKGKNKEIKILHAVLPRDDYDESKL 228

Query: 228 DKGNKGFHSKFVSVDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNE 287
           D  N  F S ++ +D N   EE      PY V  +       YG SPA EA+P +R LN+
Sbjct: 229 DGKNMEFASYYIDMDNNTILEESGYYELPYSVFIWEKETSSAYGGSPAREAIPDMRLLNK 288

Query: 288 TVNELAQFGRLSLHPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYH 347
                 +  +L   PP       +     +  GY            +  P+  G   P  
Sbjct: 289 VEEARLKLAQLVSEPPMNVPDSMRGFESVVPAGY----NYYERPDMIMTPINIGANFPIT 344

Query: 348 -EELNRLKESIRSLFLLDLFQVLDDK-ASRSAAESMEKTREKGAFVGPLIGGLQSEFIGA 405
            E +  ++  +R  F +D   +L  + A ++A E +E   EK A +  LI   Q++ +  
Sbjct: 345 LETIQDIESRLRDKFHVDFMLMLQAQTAQKTATEVIELQGEKSALLSSLIVN-QNKALSE 403

Query: 406 MISRELDILDSQGNLPECEGADNPPVSLLKVEYTSPLF----KYQQAESVASALQGVNTV 461
           ++ R L+I+  QG  PE     N   ++L V++  PL     +Y Q   V ++L     +
Sbjct: 404 IVIRTLNIMYRQGRFPEPPNILNGSDAVLNVDFVGPLAQAQKRYHQTGGVQTSLAISQPI 463

Query: 462 VELGVKTGDPSCMDHMDTDRVSRFSLWATNTPAVLIRDTAEVEDIRQQR 510
           +++     +P  +D++DTD++ +  L     P   IR+  EVE IRQQR
Sbjct: 464 IQM-----NPEVLDYIDTDKLLKNVLDTNGFPQSAIREDDEVEKIRQQR 507