BLAST/PSIBLAST alignment of GI: 254781213 and GI: 42526662 at iteration 1
>gi|42526662|ref|NP_971760.1| head-to-tail joining protein, putative [Treponema denticola ATCC 35405] Length = 560
>gi|41816855|gb|AAS11641.1| head-to-tail joining protein, putative [Treponema denticola ATCC 35405] Length = 560
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 214/469 (45%), Gaps = 34/469 (7%)
Query: 51 SEACIKLSSLLSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGF 110
SE KL S L P W L S + + Y V++W +Q L+
Sbjct: 64 SEYLKKLVSGLMGYTISPNVTWLKL--SLNNTEMLEYA------GVKDWLEQSEKALY-- 113
Query: 111 RERSRSGFVGCLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQN 170
E +R+ + F ++ FG G +DEK E IR++++ +Y++ N
Sbjct: 114 EEFNRNNLYSQVSLFISNAASFGHGVML----IDEKK-ENSIRFLTIAEPEIYIAENEYG 168
Query: 171 VVDSVYREFTFTVDQIVSKWGDKVLSSKMKSALA--RNENERFTIIHAVYPKSLTDKKK- 227
+D+V+R F+ TV I++++G++ +S ++K+ + +N+ I+HAV P+ D+ K
Sbjct: 169 DIDTVFRYFSMTVKNIIARFGEENVSEQIKNDAKDIKGKNKEIKILHAVLPRDDYDESKL 228
Query: 228 DKGNKGFHSKFVSVDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNE 287
D N F S ++ +D N EE PY V + YG SPA EA+P +R LN+
Sbjct: 229 DGKNMEFASYYIDMDNNTILEESGYYELPYSVFIWEKETSSAYGGSPAREAIPDMRLLNK 288
Query: 288 TVNELAQFGRLSLHPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYH 347
+ +L PP + + GY + P+ G P
Sbjct: 289 VEEARLKLAQLVSEPPMNVPDSMRGFESVVPAGY----NYYERPDMIMTPINIGANFPIT 344
Query: 348 -EELNRLKESIRSLFLLDLFQVLDDK-ASRSAAESMEKTREKGAFVGPLIGGLQSEFIGA 405
E + ++ +R F +D +L + A ++A E +E EK A + LI Q++ +
Sbjct: 345 LETIQDIESRLRDKFHVDFMLMLQAQTAQKTATEVIELQGEKSALLSSLIVN-QNKALSE 403
Query: 406 MISRELDILDSQGNLPECEGADNPPVSLLKVEYTSPLF----KYQQAESVASALQGVNTV 461
++ R L+I+ QG PE N ++L V++ PL +Y Q V ++L +
Sbjct: 404 IVIRTLNIMYRQGRFPEPPNILNGSDAVLNVDFVGPLAQAQKRYHQTGGVQTSLAISQPI 463
Query: 462 VELGVKTGDPSCMDHMDTDRVSRFSLWATNTPAVLIRDTAEVEDIRQQR 510
+++ +P +D++DTD++ + L P IR+ EVE IRQQR
Sbjct: 464 IQM-----NPEVLDYIDTDKLLKNVLDTNGFPQSAIREDDEVEKIRQQR 507