BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781213|ref|YP_003065626.1| head-to-tail joining protein,
putative [Candidatus Liberibacter asiaticus str. psy62]
(556 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
asiaticus str. psy62]
Length = 556
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/556 (100%), Positives = 556/556 (100%)
Query: 1 MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL 60
MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL
Sbjct: 1 MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL 60
Query: 61 LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG 120
LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG
Sbjct: 61 LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG 120
Query: 121 CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT 180
CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT
Sbjct: 121 CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT 180
Query: 181 FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS 240
FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS
Sbjct: 181 FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS 240
Query: 241 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL 300
VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL
Sbjct: 241 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL 300
Query: 301 HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL 360
HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL
Sbjct: 301 HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL 360
Query: 361 FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL 420
FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL
Sbjct: 361 FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL 420
Query: 421 PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD 480
PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD
Sbjct: 421 PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD 480
Query: 481 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR 540
RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR
Sbjct: 481 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR 540
Query: 541 AMEKKLTHDMMENSYG 556
AMEKKLTHDMMENSYG
Sbjct: 541 AMEKKLTHDMMENSYG 556
>gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 175
Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 7 KDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNN 40
KDI+ R L+N + E N W ++ F+ Y N
Sbjct: 73 KDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKN 106
>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 409 RELDILDSQGNLPECEGADNPPVSLLKVEYTS--PLFKYQQAESVASALQGVNTVVELGV 466
RELDIL SQG + G D SL T LF Q+ +L G T +
Sbjct: 25 RELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI---- 80
Query: 467 KTGDPSCMD 475
GDPS D
Sbjct: 81 -IGDPSFRD 88
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 183 VDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKD 228
V IV+KW K L++ + EN RF + AV + + D+ D
Sbjct: 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCD 714
>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 53 ACIKLSSLLSSLITPPGQKWHGLAESFSAYQAF-LYKEDARSKKVREWCDQVTDTL 107
AC+ + SLL+ PG + SF +Y+ R R D VTD L
Sbjct: 360 ACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVL 415
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,453
Number of Sequences: 1233
Number of extensions: 13601
Number of successful extensions: 39
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 556
length of database: 328,796
effective HSP length: 79
effective length of query: 477
effective length of database: 231,389
effective search space: 110372553
effective search space used: 110372553
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)