BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter asiaticus str. psy62] (556 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter asiaticus str. psy62] Length = 556 Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/556 (100%), Positives = 556/556 (100%) Query: 1 MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL 60 MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL Sbjct: 1 MNQRSAKDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNNAQLRMWDTTGSEACIKLSSL 60 Query: 61 LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG 120 LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG Sbjct: 61 LSSLITPPGQKWHGLAESFSAYQAFLYKEDARSKKVREWCDQVTDTLFGFRERSRSGFVG 120 Query: 121 CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT 180 CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT Sbjct: 121 CLQSFYTSVVEFGTGCFYMEADVDEKGLEEGIRYISVPLSNVYMSVNHQNVVDSVYREFT 180 Query: 181 FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS 240 FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS Sbjct: 181 FTVDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKDKGNKGFHSKFVS 240 Query: 241 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL 300 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL Sbjct: 241 VDENRFFEEKQIATFPYIVGRYRVRADEIYGRSPAMEALPTIRRLNETVNELAQFGRLSL 300 Query: 301 HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL 360 HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL Sbjct: 301 HPPTIAVSEAKQRNFDLKPGYMNIGALSREGRSLFQPVQFGNPLPYHEELNRLKESIRSL 360 Query: 361 FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL 420 FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL Sbjct: 361 FLLDLFQVLDDKASRSAAESMEKTREKGAFVGPLIGGLQSEFIGAMISRELDILDSQGNL 420 Query: 421 PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD 480 PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD Sbjct: 421 PECEGADNPPVSLLKVEYTSPLFKYQQAESVASALQGVNTVVELGVKTGDPSCMDHMDTD 480 Query: 481 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR 540 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR Sbjct: 481 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIGAKAAGR 540 Query: 541 AMEKKLTHDMMENSYG 556 AMEKKLTHDMMENSYG Sbjct: 541 AMEKKLTHDMMENSYG 556 >gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter asiaticus str. psy62] Length = 175 Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 7 KDIQDRFNYLKNQRGELNYWMEELTGFLYPYKNN 40 KDI+ R L+N + E N W ++ F+ Y N Sbjct: 73 KDIEQRVILLENHKKEYNLWFQKYDSFIMSYNKN 106 >gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 409 RELDILDSQGNLPECEGADNPPVSLLKVEYTS--PLFKYQQAESVASALQGVNTVVELGV 466 RELDIL SQG + G D SL T LF Q+ +L G T + Sbjct: 25 RELDILCSQGVVTAYIGYDLTASSLHAGHLTQLMLLFWLQKTGHKPISLMGGGTSI---- 80 Query: 467 KTGDPSCMD 475 GDPS D Sbjct: 81 -IGDPSFRD 88 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 23/46 (50%) Query: 183 VDQIVSKWGDKVLSSKMKSALARNENERFTIIHAVYPKSLTDKKKD 228 V IV+KW K L++ + EN RF + AV + + D+ D Sbjct: 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCD 714 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 53 ACIKLSSLLSSLITPPGQKWHGLAESFSAYQAF-LYKEDARSKKVREWCDQVTDTL 107 AC+ + SLL+ PG + SF +Y+ R R D VTD L Sbjct: 360 ACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVL 415 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 336,453 Number of Sequences: 1233 Number of extensions: 13601 Number of successful extensions: 39 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 6 length of query: 556 length of database: 328,796 effective HSP length: 79 effective length of query: 477 effective length of database: 231,389 effective search space: 110372553 effective search space used: 110372553 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)