Query         gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:42:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781214.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f2ha4 c.1.8.13 (A:248-585) P   9.9      32  0.0023   14.7   0.2   26   31-56    265-291 (338)
  2 d1wmha_ d.15.2.2 (A:) Protein    7.3      59  0.0043   13.2   0.7   12   80-91     63-74  (83)
  3 d2p3ha1 d.145.1.4 (A:5-102) Un   7.0      45  0.0033   13.9  -0.0   12   43-54     33-44  (98)
  4 d2c7na1 g.39.1.15 (A:18-73) Ra   6.9      54   0.004   13.4   0.3   11   49-59      6-16  (56)
  5 d1xdya_ d.176.1.1 (A:) Bacteri   6.2      57  0.0042   13.3   0.1   27   70-96    145-171 (269)
  6 d2r85a1 c.30.1.8 (A:1-99) 5-fo   5.9      60  0.0044   13.2   0.1   20   80-101    56-75  (99)
  7 d2o3ga1 d.145.1.4 (A:180-255)    5.9      58  0.0042   13.2   0.0   11   43-53     27-37  (76)
  8 d2rk5a1 d.145.1.4 (A:5-88) Put   5.0      73  0.0053   12.7   0.1   11   43-53     30-40  (84)
  9 d2r2za1 d.145.1.4 (A:5-88) Put   4.6      84  0.0061   12.4   0.2   12   43-54     33-44  (84)
 10 d2r7ka1 c.30.1.8 (A:1-123) 5-f   4.6      87  0.0064   12.3   0.2   22   78-101    77-98  (123)

No 1  
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}
Probab=9.94  E-value=32  Score=14.65  Aligned_cols=26  Identities=31%  Similarity=0.588  Sum_probs=12.2

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHCCCH
Q ss_conf             8776312-3221223444444421521
Q gi|254781214|r   31 IGGLMGG-AAGLYSEWDTIGGFFGSSQ   56 (110)
Q Consensus        31 igglmgg-aaglysewdtiggffgssq   56 (110)
                      |||..+. .+-||..|--.|-|+.-.+
T Consensus       265 igGf~~~~~~EL~~RW~q~~~f~P~~r  291 (338)
T d2f2ha4         265 IGGFENTAPAHVYKRWCAFGLLSSHSR  291 (338)
T ss_dssp             TTCSSSCCCHHHHHHHHHHHHTSSEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCHHEE
T ss_conf             578889988799999999985344206


No 2  
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.30  E-value=59  Score=13.22  Aligned_cols=12  Identities=42%  Similarity=0.800  Sum_probs=9.6

Q ss_pred             HHHHHHHHCCCC
Q ss_conf             642334330257
Q gi|254781214|r   80 QESLRAYEMNRI   91 (110)
Q Consensus        80 qeslrayemnri   91 (110)
                      .|.+|-||+||-
T Consensus        63 ~EA~RLye~n~d   74 (83)
T d1wmha_          63 EEAFRLYELNKD   74 (83)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999970577


No 3  
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=7.05  E-value=45  Score=13.85  Aligned_cols=12  Identities=25%  Similarity=0.631  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             234444444215
Q gi|254781214|r   43 SEWDTIGGFFGS   54 (110)
Q Consensus        43 sewdtiggffgs   54 (110)
                      .++||+|||+-.
T Consensus        33 ~~~~Tl~G~~~~   44 (98)
T d2p3ha1          33 GDYETISGLLFD   44 (98)
T ss_dssp             SSCCBHHHHHHH
T ss_pred             CCCCCHHHHHHH
T ss_conf             784179999999


No 4  
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86  E-value=54  Score=13.41  Aligned_cols=11  Identities=27%  Similarity=0.827  Sum_probs=8.5

Q ss_pred             HHHHCCCHHHC
Q ss_conf             44421521212
Q gi|254781214|r   49 GGFFGSSQKEG   59 (110)
Q Consensus        49 ggffgssqkeg   59 (110)
                      -||||+.+.+|
T Consensus         6 CGFyG~~~~~g   16 (56)
T d2c7na1           6 CGYYGNPAWQG   16 (56)
T ss_dssp             SSSCCCGGGTT
T ss_pred             CCCCCCCCCCC
T ss_conf             78977802178


No 5  
>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]}
Probab=6.17  E-value=57  Score=13.29  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             612799988664233433025766133
Q gi|254781214|r   70 EGDELAEVRRQESLRAYEMNRIPIPAR   96 (110)
Q Consensus        70 egdelaevrrqeslrayemnripipar   96 (110)
                      ++-.|.+....+.|-||+||--|+|..
T Consensus       145 ~slpl~~a~~~~~lLA~~mNGepLp~~  171 (269)
T d1xdya_         145 EGLRLDEAMHPLTLMTVGVYGKALPPQ  171 (269)
T ss_dssp             EEEEHHHHHSTTCEEEEEETTEECCGG
T ss_pred             CCCCHHHHCCCCEEEEEECCCEECCHH
T ss_conf             134678813864066500088588543


No 6  
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=5.93  E-value=60  Score=13.18  Aligned_cols=20  Identities=25%  Similarity=0.559  Sum_probs=15.3

Q ss_pred             HHHHHHHHCCCCCCCHHHHCHH
Q ss_conf             6423343302576613330404
Q gi|254781214|r   80 QESLRAYEMNRIPIPARRFTSS  101 (110)
Q Consensus        80 qeslrayemnripiparrftss  101 (110)
                      ||.||  ++|-|-||.|-|+.-
T Consensus        56 ~e~L~--~~N~I~IPhgSfv~Y   75 (99)
T d2r85a1          56 EEELL--NLNAVVVPTGSFVAH   75 (99)
T ss_dssp             HHHHH--HTTEEECCCTTHHHH
T ss_pred             HHHHH--HCCEEEECCCCEEEE
T ss_conf             99888--779899658887888


No 7  
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}
Probab=5.88  E-value=58  Score=13.25  Aligned_cols=11  Identities=18%  Similarity=0.607  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHC
Q ss_conf             23444444421
Q gi|254781214|r   43 SEWDTIGGFFG   53 (110)
Q Consensus        43 sewdtiggffg   53 (110)
                      .+++|||||.=
T Consensus        27 ~~~~Ti~G~vl   37 (76)
T d2o3ga1          27 ADFHTVAGLIM   37 (76)
T ss_dssp             CSCSBHHHHHH
T ss_pred             CCCCCHHHHHH
T ss_conf             55314899999


No 8  
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=5.03  E-value=73  Score=12.72  Aligned_cols=11  Identities=45%  Similarity=0.752  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHC
Q ss_conf             23444444421
Q gi|254781214|r   43 SEWDTIGGFFG   53 (110)
Q Consensus        43 sewdtiggffg   53 (110)
                      .+.||+|||.-
T Consensus        30 ~~~dTlgG~v~   40 (84)
T d2rk5a1          30 DNVDTIAGFYL   40 (84)
T ss_dssp             TTCCBHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             66142999999


No 9  
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.61  E-value=84  Score=12.41  Aligned_cols=12  Identities=33%  Similarity=0.645  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             234444444215
Q gi|254781214|r   43 SEWDTIGGFFGS   54 (110)
Q Consensus        43 sewdtiggffgs   54 (110)
                      .+.||||||.-+
T Consensus        33 ~~~~TigG~i~~   44 (84)
T d2r2za1          33 SDVDTMAGYLIT   44 (84)
T ss_dssp             TTCCBHHHHHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             661449999999


No 10 
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.55  E-value=87  Score=12.32  Aligned_cols=22  Identities=41%  Similarity=0.600  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHCCCCCCCHHHHCHH
Q ss_conf             866423343302576613330404
Q gi|254781214|r   78 RRQESLRAYEMNRIPIPARRFTSS  101 (110)
Q Consensus        78 rrqeslrayemnripiparrftss  101 (110)
                      .-|+-||  ++|-|-||.|-|+.-
T Consensus        77 ~~qe~L~--~~N~I~IPhgSfv~Y   98 (123)
T d2r7ka1          77 EIQEKLR--ELNSIVVPHGSFIAY   98 (123)
T ss_dssp             HHHHHHH--HTTEEECCBHHHHHH
T ss_pred             HHHHHHH--HCCEEEECCCCEEEE
T ss_conf             9999998--779899648881566


Done!