Query gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 110 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:42:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781214.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2f2ha4 c.1.8.13 (A:248-585) P 9.9 32 0.0023 14.7 0.2 26 31-56 265-291 (338) 2 d1wmha_ d.15.2.2 (A:) Protein 7.3 59 0.0043 13.2 0.7 12 80-91 63-74 (83) 3 d2p3ha1 d.145.1.4 (A:5-102) Un 7.0 45 0.0033 13.9 -0.0 12 43-54 33-44 (98) 4 d2c7na1 g.39.1.15 (A:18-73) Ra 6.9 54 0.004 13.4 0.3 11 49-59 6-16 (56) 5 d1xdya_ d.176.1.1 (A:) Bacteri 6.2 57 0.0042 13.3 0.1 27 70-96 145-171 (269) 6 d2r85a1 c.30.1.8 (A:1-99) 5-fo 5.9 60 0.0044 13.2 0.1 20 80-101 56-75 (99) 7 d2o3ga1 d.145.1.4 (A:180-255) 5.9 58 0.0042 13.2 0.0 11 43-53 27-37 (76) 8 d2rk5a1 d.145.1.4 (A:5-88) Put 5.0 73 0.0053 12.7 0.1 11 43-53 30-40 (84) 9 d2r2za1 d.145.1.4 (A:5-88) Put 4.6 84 0.0061 12.4 0.2 12 43-54 33-44 (84) 10 d2r7ka1 c.30.1.8 (A:1-123) 5-f 4.6 87 0.0064 12.3 0.2 22 78-101 77-98 (123) No 1 >d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]} Probab=9.94 E-value=32 Score=14.65 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=12.2 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHCCCH Q ss_conf 8776312-3221223444444421521 Q gi|254781214|r 31 IGGLMGG-AAGLYSEWDTIGGFFGSSQ 56 (110) Q Consensus 31 igglmgg-aaglysewdtiggffgssq 56 (110) |||..+. .+-||..|--.|-|+.-.+ T Consensus 265 igGf~~~~~~EL~~RW~q~~~f~P~~r 291 (338) T d2f2ha4 265 IGGFENTAPAHVYKRWCAFGLLSSHSR 291 (338) T ss_dssp TTCSSSCCCHHHHHHHHHHHHTSSEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHCCHHEE T ss_conf 578889988799999999985344206 No 2 >d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Probab=7.30 E-value=59 Score=13.22 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=9.6 Q ss_pred HHHHHHHHCCCC Q ss_conf 642334330257 Q gi|254781214|r 80 QESLRAYEMNRI 91 (110) Q Consensus 80 qeslrayemnri 91 (110) .|.+|-||+||- T Consensus 63 ~EA~RLye~n~d 74 (83) T d1wmha_ 63 EEAFRLYELNKD 74 (83) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHCCCC T ss_conf 999999970577 No 3 >d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]} Probab=7.05 E-value=45 Score=13.85 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.2 Q ss_pred HHHHHHHHHHCC Q ss_conf 234444444215 Q gi|254781214|r 43 SEWDTIGGFFGS 54 (110) Q Consensus 43 sewdtiggffgs 54 (110) .++||+|||+-. T Consensus 33 ~~~~Tl~G~~~~ 44 (98) T d2p3ha1 33 GDYETISGLLFD 44 (98) T ss_dssp SSCCBHHHHHHH T ss_pred CCCCCHHHHHHH T ss_conf 784179999999 No 4 >d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]} Probab=6.86 E-value=54 Score=13.41 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.5 Q ss_pred HHHHCCCHHHC Q ss_conf 44421521212 Q gi|254781214|r 49 GGFFGSSQKEG 59 (110) Q Consensus 49 ggffgssqkeg 59 (110) -||||+.+.+| T Consensus 6 CGFyG~~~~~g 16 (56) T d2c7na1 6 CGYYGNPAWQG 16 (56) T ss_dssp SSSCCCGGGTT T ss_pred CCCCCCCCCCC T ss_conf 78977802178 No 5 >d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]} Probab=6.17 E-value=57 Score=13.29 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 612799988664233433025766133 Q gi|254781214|r 70 EGDELAEVRRQESLRAYEMNRIPIPAR 96 (110) Q Consensus 70 egdelaevrrqeslrayemnripipar 96 (110) ++-.|.+....+.|-||+||--|+|.. T Consensus 145 ~slpl~~a~~~~~lLA~~mNGepLp~~ 171 (269) T d1xdya_ 145 EGLRLDEAMHPLTLMTVGVYGKALPPQ 171 (269) T ss_dssp EEEEHHHHHSTTCEEEEEETTEECCGG T ss_pred CCCCHHHHCCCCEEEEEECCCEECCHH T ss_conf 134678813864066500088588543 No 6 >d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Probab=5.93 E-value=60 Score=13.18 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=15.3 Q ss_pred HHHHHHHHCCCCCCCHHHHCHH Q ss_conf 6423343302576613330404 Q gi|254781214|r 80 QESLRAYEMNRIPIPARRFTSS 101 (110) Q Consensus 80 qeslrayemnripiparrftss 101 (110) ||.|| ++|-|-||.|-|+.- T Consensus 56 ~e~L~--~~N~I~IPhgSfv~Y 75 (99) T d2r85a1 56 EEELL--NLNAVVVPTGSFVAH 75 (99) T ss_dssp HHHHH--HTTEEECCCTTHHHH T ss_pred HHHHH--HCCEEEECCCCEEEE T ss_conf 99888--779899658887888 No 7 >d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]} Probab=5.88 E-value=58 Score=13.25 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=7.9 Q ss_pred HHHHHHHHHHC Q ss_conf 23444444421 Q gi|254781214|r 43 SEWDTIGGFFG 53 (110) Q Consensus 43 sewdtiggffg 53 (110) .+++|||||.= T Consensus 27 ~~~~Ti~G~vl 37 (76) T d2o3ga1 27 ADFHTVAGLIM 37 (76) T ss_dssp CSCSBHHHHHH T ss_pred CCCCCHHHHHH T ss_conf 55314899999 No 8 >d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]} Probab=5.03 E-value=73 Score=12.72 Aligned_cols=11 Identities=45% Similarity=0.752 Sum_probs=8.0 Q ss_pred HHHHHHHHHHC Q ss_conf 23444444421 Q gi|254781214|r 43 SEWDTIGGFFG 53 (110) Q Consensus 43 sewdtiggffg 53 (110) .+.||+|||.- T Consensus 30 ~~~dTlgG~v~ 40 (84) T d2rk5a1 30 DNVDTIAGFYL 40 (84) T ss_dssp TTCCBHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 66142999999 No 9 >d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]} Probab=4.61 E-value=84 Score=12.41 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=8.5 Q ss_pred HHHHHHHHHHCC Q ss_conf 234444444215 Q gi|254781214|r 43 SEWDTIGGFFGS 54 (110) Q Consensus 43 sewdtiggffgs 54 (110) .+.||||||.-+ T Consensus 33 ~~~~TigG~i~~ 44 (84) T d2r2za1 33 SDVDTMAGYLIT 44 (84) T ss_dssp TTCCBHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 661449999999 No 10 >d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Probab=4.55 E-value=87 Score=12.32 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=16.5 Q ss_pred HHHHHHHHHHCCCCCCCHHHHCHH Q ss_conf 866423343302576613330404 Q gi|254781214|r 78 RRQESLRAYEMNRIPIPARRFTSS 101 (110) Q Consensus 78 rrqeslrayemnripiparrftss 101 (110) .-|+-|| ++|-|-||.|-|+.- T Consensus 77 ~~qe~L~--~~N~I~IPhgSfv~Y 98 (123) T d2r7ka1 77 EIQEKLR--ELNSIVVPHGSFIAY 98 (123) T ss_dssp HHHHHHH--HTTEEECCBHHHHHH T ss_pred HHHHHHH--HCCEEEECCCCEEEE T ss_conf 9999998--779899648881566 Done!