RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781214|ref|YP_003065627.1| hypothetical protein
CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>1vk5_A Expressed protein; structural genomics, unknown function,
          protein structure initiative, center for eukaryotic
          structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis
          thaliana} (A:)
          Length = 157

 Score = 26.9 bits (59), Expect = 0.97
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 70 EGDELAEVRRQESLRAYEMNRIPIPARR 97
            DE + +RR E  + Y M ++PIP  R
Sbjct: 32 VADEGSLLRRAEMYQDY-MKQVPIPTNR 58


>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A
           {Caenorhabditis elegans} (A:)
          Length = 175

 Score = 26.0 bits (57), Expect = 1.6
 Identities = 3/20 (15%), Positives = 8/20 (40%)

Query: 45  WDTIGGFFGSSQKEGKKEEE 64
           WD         +++ ++ E 
Sbjct: 154 WDDFXTLGKQXKEDYERAEA 173


>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein,
           viral protein; HET: SIA GAL NAG BMA MAN; 2.10A
           {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A*
           2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A
           2wrd_A 2wre_A* (A:1-102,A:275-509)
          Length = 337

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 15/76 (19%)

Query: 19  KLGSIFGPVGGVIGGLMGGAAGLY---SEWDTIGGFFGSSQK-----EGK------KEEE 64
             G+I G + G   G++ G  G +    +         S+QK       K      K   
Sbjct: 170 LFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNT 229

Query: 65  GVRPLEGDELAEVRRQ 80
               +   E + + R+
Sbjct: 230 QFEAVGK-EFSNLERR 244


>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal
          binding; 1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
          (A:)
          Length = 347

 Score = 25.0 bits (53), Expect = 3.8
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 28 GGVIGGLMGGAAGLYSEWDTIGGF 51
          G + G L+G   G + E       
Sbjct: 9  GCLAGALLGDCVGSFYEAHDTVDL 32


>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta
          domain, hydrolase; 2.10A {} (A:)
          Length = 270

 Score = 24.9 bits (53), Expect = 4.3
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)

Query: 49 GGFFGSSQKEGKKEEEGVRPLE-GDELAEVRRQESLRAYEMNRIPIPARRF 98
           G          +       L   ++    RR E + A +         RF
Sbjct: 45 AGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALDQLGAGHRHGRF 95


>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural
          genomics, NPPSFA; 1.60A {Thermus thermophilus HB8} PDB:
          2cwc_A 2yzw_A (A:)
          Length = 303

 Score = 24.5 bits (52), Expect = 5.1
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 28 GGVIGGLMGGAAGLYSEWDTIGGF 51
          G  +G  +G A G   E    G F
Sbjct: 13 GAFLGLAVGDALGAQVEGLPKGTF 36


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 836,673
Number of extensions: 34535
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 110
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 45
Effective length of database: 2,758,724
Effective search space: 124142580
Effective search space used: 124142580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)