RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781214|ref|YP_003065627.1| hypothetical protein
CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.039
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 13/37 (35%)

Query: 62 EEEGVRPLEGDELAEVRRQESLRAYEMNRIP---IPA 95
          E++ ++ L          Q SL+ Y  +  P   I A
Sbjct: 18 EKQALKKL----------QASLKLYADDSAPALAIKA 44


>1vk5_A Expressed protein; structural genomics, unknown function, protein
          structure initiative, center for eukaryotic structural
          genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana}
          SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
          Length = 157

 Score = 27.3 bits (60), Expect = 0.81
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 70 EGDELAEVRRQESLRAYEMNRIPIPARR 97
            DE + +RR E  + Y M ++PIP  R
Sbjct: 32 VADEGSLLRRAEMYQDY-MKQVPIPTNR 58


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 951,339
Number of extensions: 41105
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 6
Length of query: 110
Length of database: 5,693,230
Length adjustment: 74
Effective length of query: 36
Effective length of database: 3,899,174
Effective search space: 140370264
Effective search space used: 140370264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)