RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781214|ref|YP_003065627.1| hypothetical protein
CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 165

 Score = 28.6 bits (62), Expect = 0.17
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 45  WDTIGGFFGSSQKEGKKEEEGVRPLEGDELAEVRRQESLRAY-EMNRIPIP 94
                  F  +    K + + + P    E +   R+E + AY E + IP+P
Sbjct: 118 KGNDQVRFELTAYALKPDIKVIAPWR--EWSFQGRKE-MIAYAEAHGIPVP 165


>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680
          {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 121

 Score = 25.7 bits (56), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 77 VRRQESLRAYEMNRIPIPARR 97
          +RR E  + Y M ++PIP  R
Sbjct: 4  LRRAEMYQDY-MKQVPIPTNR 23


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 24.2 bits (52), Expect = 3.1
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 46  DTIGGFFGSSQKEGKKEEEGVRPLEGDELAEVRRQESLRAYE 87
           +    FFG  Q+  + + E +R      L+  ++   L A +
Sbjct: 123 EWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALD 164


>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 301

 Score = 23.7 bits (50), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 28 GGVIGGLMGGAAGLYSEWDT 47
          G V G ++G A G+ +E  T
Sbjct: 10 GSVFGAVIGDALGMPTENLT 29


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 23.2 bits (50), Expect = 5.6
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 33  GLMGGAAGLYSEWDTIGGF--FGSSQKEGKKEEEGVRP 68
           G+ G    +YS+ D +G +  F + ++    E      
Sbjct: 526 GVFGTMNSMYSDCDVLGNYAAFSALKRADGSETARTIM 563


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 22.8 bits (49), Expect = 8.1
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 86  YEMNRIPIPARRFTSSSL 103
           Y+ NR     R F S  +
Sbjct: 1   YQTNRPEASKRLFVSQEV 18


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit
          I {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 22.8 bits (49), Expect = 8.9
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 23 IFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQ 56
          +FG   G++G  +  +  + +E    G   G  Q
Sbjct: 21 LFGAWAGMVGTAL--SLLIRAELGQPGTLLGDDQ 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,141
Number of extensions: 16566
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)