BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781214|ref|YP_003065627.1| hypothetical protein
CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score =  215 bits (548), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
           MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK
Sbjct: 1   MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60

Query: 61  KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110
           KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR
Sbjct: 61  KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110


>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 364

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 69 LEGDELAEVRRQESLRAYEMNRIPIPARRF 98
          LEG E++E  +++ L AY   R+ +  RRF
Sbjct: 39 LEGFEVSEFNKEQELSAY---RLMLLIRRF 65


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.137    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,791
Number of Sequences: 1233
Number of extensions: 2480
Number of successful extensions: 10
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 32 (16.9 bits)