HHsearch alignment for GI: 254781215 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=97.09 E-value=0.012 Score=35.20 Aligned_cols=162 Identities=16% Similarity=-0.037 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--HCCCCE-EEEEECCHHHHHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998--089966-9998085899999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGIS-VICLANSETQLKT 122 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~--~~p~~k-v~vtApt~~Q~~~ 122 (511)
T Consensus 47 ~gf~~pt~IQ~~~iP~~l~g------------~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Q 114 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAG------------RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ 114 (513)
T ss_pred CCCCCCCHHHHHHCHHHHCC------------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
T ss_conf 59899898999658776369------------997998689871789999999999740045577756997799999999
Q ss_pred HHHHHHHHHHHHCH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHH
Q ss_conf 99999999998550-00134443222222333444321112357861698530357556100212026761499971110
Q gi|254781215|r 123 TLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201 (511)
Q Consensus 123 ilw~Ei~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAs 201 (511)
T Consensus 115 i-~~~~~~~~~~~~~~~------~~~i~G-G~~~~~q~~~l~~g--~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 115 I-AEELRKLGKNLGGLR------VAVVYG-GVSIRKQIEALKRG--VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred H-HHHHHHHHHHCCCCE------EEEEEC-CCCHHHHHHHHHCC--CCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 9-999999986245842------999989-98989999987249--9899979608999986488554650189967617
Q ss_pred CCCH-HHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 2997-889888888507998138998238
Q gi|254781215|r 202 GTPD-VINLGILGFLTERNANRFWIMTSN 229 (511)
Q Consensus 202 gI~d-~i~e~i~~~Lt~~g~~~~~i~~~n 229 (511)
T Consensus 185 rmld~gf~~~i~~I~~~~p~~~qtllfSA 213 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSA 213 (513)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 66388768999999973897748999982