HHsearch alignment for GI: 254781215 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=97.49 E-value=0.0023 Score=39.82 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=83.5
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 99987070666528866776421455777565557845899999999999874056555421012465025765978999
Q gi|254781215|r 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN 94 (511)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~ 94 (511)
T Consensus 61 ~~~~~~e~e~~~~fF~k~~G~~~ws~----------QR~WakR~~rg----------------~SFaiiAPTGvGKTTfg 114 (1187)
T COG1110 61 FRRYLWEYEEFEEFFKKATGFRPWSA----------QRVWAKRLVRG----------------KSFAIIAPTGVGKTTFG 114 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHCC----------------CCEEEECCCCCCHHHHH
T ss_conf 99999999999999998638986078----------89999998737----------------84489827887654799
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEE
Q ss_conf 999999998089966999808589999999999999998550001344432222223334443-2111235786169853
Q gi|254781215|r 95 AWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV-LHCSLGIDSKHYSTMC 173 (511)
Q Consensus 95 a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 173 (511)
T Consensus 115 ~~~sl~~a~k--gkr~yii~PT~~Lv~Q~~-~kl~~~~e~~~-----~~~~~~~yh~~l~~~ekee~le~i~~gd-fdIl 185 (1187)
T COG1110 115 LLMSLYLAKK--GKRVYIIVPTTTLVRQVY-ERLKKFAEDAG-----SLDVLVVYHSALPTKEKEEALERIESGD-FDIL 185 (1187)
T ss_pred HHHHHHHHHC--CCEEEEEECCHHHHHHHH-HHHHHHHHHCC-----CCCEEEEECCCCCHHHHHHHHHHHHCCC-CCEE
T ss_conf 9999998755--874999966789999999-99999886537-----8524665312366577999999986599-6399
Q ss_pred CCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 035755610021202676149997111
Q gi|254781215|r 174 RTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 174 ~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
T Consensus 186 itTs~FL~k~~e~L~~~kFdfifVDDV 212 (1187)
T COG1110 186 ITTSQFLSKRFEELSKLKFDFIFVDDV 212 (1187)
T ss_pred EEEHHHHHHHHHHHCCCCCCEEEECCH
T ss_conf 974787886699840457778998047