HHsearch alignment for GI: 254781215 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=91.28  E-value=0.99  Score=23.20  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             58999999999998740565554210124650257659789999999999980899669998085899999999999999
Q gi|254781215|r   52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW  131 (511)
Q Consensus        52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~  131 (511)
T Consensus       264 T~aQ~~vi~EI~~Dl~~~~-----~M~R-LlQGDVGSGKTvVA~laml~ai~--~G~Q~ALMAPTEILA~Q-H~~~~~~~  334 (677)
T COG1200         264 TNAQKRVIKEILADLASPV-----PMNR-LLQGDVGSGKTVVALLAMLAAIE--AGYQAALMAPTEILAEQ-HYESLRKW  334 (677)
T ss_pred             CHHHHHHHHHHHHHHCCCH-----HHHH-HHCCCCCCCHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHH-HHHHHHHH
T ss_conf             7899999999986644866-----6678-75267677789999999999987--28816886637999999-99999987


Q ss_pred             HHHC
Q ss_conf             9855
Q gi|254781215|r  132 LSLL  135 (511)
Q Consensus       132 ~~~~  135 (511)
T Consensus       335 l~~~  338 (677)
T COG1200         335 LEPL  338 (677)
T ss_pred             HHHC
T ss_conf             6651