HHsearch alignment for GI: 254781215 and conserved domain: COG4373
>COG4373 Mu-like prophage FluMu protein gp28 [General function prediction only].
Probab=99.58 E-value=5.7e-12 Score=94.11 Aligned_cols=364 Identities=18% Similarity=0.191 Sum_probs=212.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCC--
Q ss_conf 24650257659789999999999980---8996699980858999999999999999855000134443222222333--
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMST---RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW-- 153 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~---~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~-- 153 (511)
T Consensus 31 kIAEK-SRRtGlTwaeA~~dV~~Aak~k~eGG~dVfy~gs~~emArEyI-~acamwar~fN------~~A~d~~E~~f~d 102 (509)
T COG4373 31 KIAEK-SRRTGLTWAEAYEDVRDAAKPKREGGMDVFYSGSDLEMAREYI-RACAMWARIFN------VVATDLGEVVFED 102 (509)
T ss_pred EHHHH-CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHCC
T ss_conf 15353-0102642888777898752112258852588447489999999-99999999998------8877777876447
Q ss_pred --CCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCC--HHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf --444321112357861698530357556100212026761499971110299--7889888888507998138998238
Q gi|254781215|r 154 --YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN 229 (511)
Q Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~--d~i~e~i~~~Lt~~g~~~~~i~~~n 229 (511)
T Consensus 103 ~dk~~Iltyvi~FasG-fkI~AL-S--SnPknlRg~qG~----VviDEaAFHE~ldEllkAA~a-ltmWGa~vRvi--St 171 (509)
T COG4373 103 SDKSAILTYVIAFASG-FKITAL-S--SNPKNLRGKQGK----VVIDEAAFHEDLDELLKAAAA-LTMWGAPVRVI--ST 171 (509)
T ss_pred CCHHHHHHHHEEECCC-CEEEEC-C--CCCCCCCCCCCC----EEEEHHHHHHHHHHHHHHHHH-HHHCCCCEEEE--EC
T ss_conf 8756556730320477-467660-4--797455467884----886236656539999998778-76517724899--62
Q ss_pred CCCCCCHHHHHHH---CCCCCCEEEEECCCC--------------CCCCCHHHHHHHH----HHCCCCHHHHHHHHCCCC
Q ss_conf 9987655676530---352474179840433--------------6778977899999----751898013544431756
Q gi|254781215|r 230 PRRLSGKFYEIFN---KPLDDWKRFQIDTRT--------------VEGIDPSFHEGII----ARYGLDSDVTRVEVCGQF 288 (511)
Q Consensus 230 P~~~~g~fy~~~~---~~~~~w~~~~i~~~~--------------~p~~~~~~ie~~~----~~~geds~~~r~evlgeF 288 (511)
T Consensus 172 HNGvDnlFnQ~iQear~grk~ysvH~iTldDAiadGLy~RIc~v~~~~w~pE~Ea~w~a~l~~~a~t~-eda~eEy~C~- 249 (509)
T COG4373 172 HNGVDNLFNQMIQEARQGRKKYSVHSITLDDAIADGLYERICNVDRPAWAPEVEAKWLAELRAIAGTD-EDAQEEYMCN- 249 (509)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHCCC-
T ss_conf 68701789999999870255531788865777777899999826774567567889999888656981-4457762877-
Q ss_pred CCCCCCEEECHHHHHHHHHCCCC------------------------------------CCCCCEEEEEEECCCCCCCCE
Q ss_conf 66678737559999886407653------------------------------------189970899962333478417
Q gi|254781215|r 289 PQQDIDSFIPLNIIEEALNREPC------------------------------------PDPYAPLIMGCDIAEEGGDNT 332 (511)
Q Consensus 289 p~~~~~~~i~~~~ie~a~~r~~~------------------------------------~~~~~~~viGvDVAr~G~D~s 332 (511)
T Consensus 250 Pk~s~gAYIphalie~a~~~~vp~l~fe~~~~f~~~~~~~r~~~~~~~cl~~l~P~Lqalnp~~r~~fGvDfaR~~-DLs 328 (509)
T COG4373 250 PKDSTGAYIPHALIEAAVAAEVPDLIFELGSEFHDIPAWLRESEVLTWCLPDLRPALQALNPGGRLYFGVDFARKR-DLS 328 (509)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC-CCE
T ss_conf 5667766466789998875479851797574554235664245666653443568987329997165212202256-734
Q ss_pred EEEEEC--CC----EEEEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEEEECCCCHHHHHHH-HHCCCE-EEEECCCCC
Q ss_conf 999822--75----5899873277898899999999998618882--9980068763688989-864982-798427777
Q gi|254781215|r 333 VVVLRR--GP----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDA--IIIDANNTGARTCDYL-EMLGYH-VYRVLGQKR 402 (511)
Q Consensus 333 vi~~r~--G~----~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~--i~iD~~GvG~gV~d~L-~~~g~~-v~~v~~~~~ 402 (511)
T Consensus 329 v~~v~e~~~dta~r~v~~le-i~n~pY~qq-~qvmm~ll~~lP~l~gAafDaTGnGgyLAEaAl~~fGs~~v~~V~lneK 406 (509)
T COG4373 329 VLWVWEKVGDTAWRAVVELE-IVNFPYQQQ-EQVMMWLLHLLPMLTGAAFDATGNGGYLAEAALEDFGSEKVTKVTLNEK 406 (509)
T ss_pred EEEEEEECCCHHHHHEEEEE-EECCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 99987445523522245898-624864678-9999999986366631223265760476789998627102256762788
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCCCEEEECCCCEEEEEEC-HHHCCCCCCHHHHHHHHHC
Q ss_conf 66402552279999999999997089--998189999985796799879984999841-2548999898999999975
Q gi|254781215|r 403 AVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESK-RVKGAKSTDYSDGLMYTFA 477 (511)
Q Consensus 403 ~~~~~~y~N~rae~~~~~re~l~~g~--l~~d~~l~~el~~~~~~~~~~~gki~ie~K-kkrg~~SPD~ADAl~l~fa 477 (511)
T Consensus 407 w---------y~ewmpk~Ka~~Ed~~i~~p~~~~v~~D~~hi~v--~ng~P~idk~r~kd~~a~rHgD~avA~cma~R 473 (509)
T COG4373 407 W---------YKEWMPKFKAALEDSSIRLPGTAVVRADFKHIRV--TNGSPSIDKLRKKDRDADRHGDRAVAACMARR 473 (509)
T ss_pred H---------HHHHHHHHHHHHCCCCEECCCCEEEECCCCCEEE--ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8---------8766377786513462334785035101252588--53787644011245444332178999998633