HHsearch alignment for GI: 254781215 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=97.11 E-value=0.021 Score=33.78 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
T Consensus 117 ~F~-LD~fQ~~a~~~Ler~------------esVlV~ApTssGKTvV-aeyAi~~al~-~~qrviYTsPIKALsNQK-yr 180 (1041)
T COG4581 117 PFE-LDPFQQEAIAILERG------------ESVLVCAPTSSGKTVV-AEYAIALALR-DGQRVIYTSPIKALSNQK-YR 180 (1041)
T ss_pred CCC-CCHHHHHHHHHHHCC------------CCEEEECCCCCCCCHH-HHHHHHHHHH-CCCCEEECCCHHHHHHHH-HH
T ss_conf 989-678999999998479------------9579973378985559-9999999987-189448616306642067-99
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC------CCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999985500013444322222233344432111235786169853035------755610021202676149997111
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY------SEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
T Consensus 181 dl~~~fgdv---------~~~vGL~TGDv-----~IN~~A---~clvMTTEILRnMlyrg~~~~~~-----i~~ViFDEv 238 (1041)
T COG4581 181 DLLAKFGDV---------ADMVGLMTGDV-----SINPDA---PCLVMTTEILRNMLYRGSESLRD-----IEWVVFDEV 238 (1041)
T ss_pred HHHHHHHHH---------HHHCCCEECCE-----EECCCC---CEEEEEHHHHHHHHCCCCCCCCC-----CCEEEEEEE
T ss_conf 999986005---------65404010543-----427999---66886099999986258610135-----306888766
Q ss_pred HCCCH----HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 02997----8898888885079981389982389987655676530
Q gi|254781215|r 201 SGTPD----VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 201 sgI~d----~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
T Consensus 239 Hyi~D~eRG~VWEE~Ii~lP~-~v~--~v~LSATv~N~~EF~~Wi~ 281 (1041)
T COG4581 239 HYIGDRERGVVWEEVIILLPD-HVR--FVFLSATVPNAEEFAEWIQ 281 (1041)
T ss_pred EECCCCCCCHHHHHHHHHCCC-CCC--EEEEECCCCCHHHHHHHHH
T ss_conf 650463221257899986677-776--8999678898799999997