HHsearch alignment for GI: 254781215 and conserved domain: COG4626

>COG4626 Phage terminase-like protein, large subunit [General function prediction only].
Probab=99.83  E-value=1.2e-15  Score=117.27  Aligned_cols=392  Identities=14%  Similarity=0.061  Sum_probs=236.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             58999999999998740565554210124650257659789999999999980--8996699980858999999999999
Q gi|254781215|r   52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVS  129 (511)
Q Consensus        52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei~  129 (511)
T Consensus        63 ~PwQkFiia~l~G~~~k~T~~r--rf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~-~~F~~ar  139 (546)
T COG4626          63 EPWQKFIVAALFGFYDKQTGIR--RFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAA-NSFNPAR  139 (546)
T ss_pred             CCHHHHHHHHHHHEEECCCCEE--EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHH
T ss_conf             5189999998760350578706--888999997457855789999999998765304760899834289998-8768999


Q ss_pred             HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH--HH
Q ss_conf             9998550001344432222223334443211123578616985303575561002120267614999711102997--88
Q gi|254781215|r  130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VI  207 (511)
Q Consensus       130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--~i  207 (511)
T Consensus       140 ~mv~~~~~l--------~~~~-~~~~~s~~i~~~~~~s~--ik~~---aa~~~~~Dg~~~---~~~I~DEih~f~~~~~~  202 (546)
T COG4626         140 DMVKRDDDL--------RDLC-NVQTHSRTITHRKTDST--IKAV---AADPNTVDGLNS---VGAIIDELHLFGKQEDM  202 (546)
T ss_pred             HHHHHCCCH--------HHHC-CCCCCEEEEEECCCCEE--EEEH---HCCCCCCCCCCC---CEEEEEHHHHHCCHHHH
T ss_conf             998737213--------3320-65454048986155111--3301---048875567876---54887637541678999


Q ss_pred             HHHHHHHHCCC-CCCEEEEEECCCCCCCCHHHHHHHCCC---C----CCEEEEEC---------------CCCCCCCC--
Q ss_conf             98888885079-981389982389987655676530352---4----74179840---------------43367789--
Q gi|254781215|r  208 NLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL---D----DWKRFQID---------------TRTVEGID--  262 (511)
Q Consensus       208 ~e~i~~~Lt~~-g~~~~~i~~~nP~~~~g~fy~~~~~~~---~----~w~~~~i~---------------~~~~p~~~--  262 (511)
T Consensus       203 ~~~~~~g~~ar~~~l~~~ITT-~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f~~i~e~Dd~~e~~dpe~w~kaNPnlg~s  281 (546)
T COG4626         203 YSEAKGGLGARPEGLVVYITT-SGDPPAGVFKQKLQYAKDVLDGKIKDPHFFPVIYELDEEGEHDDPENWAKANPNLGVS  281 (546)
T ss_pred             HHHHHHHHCCCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCE
T ss_conf             999974201576763999966-8988741899999999998669878821079999768820003867774308876514


Q ss_pred             --HHHHHH-HHHHC--CCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHC--CCCCCCCCEEEEEEECCCCCCCCEE-E
Q ss_conf             --778999-99751--89801354443175666678737559999886407--6531899708999623334784179-9
Q gi|254781215|r  263 --PSFHEG-IIARY--GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTV-V  334 (511)
Q Consensus       263 --~~~ie~-~~~~~--geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r--~~~~~~~~~~viGvDVAr~G~D~sv-i  334 (511)
T Consensus       282 v~~~~l~s~~~ka~~~~q~~~dF~tK~lNi~~~~-~~~~~~~~~w~~~~~~~lde~~~~gq~c~~G~Dls~~~D~ts~al  360 (546)
T COG4626         282 VDEAFLYSEYRKARNAPQEARDFMTKHLNIWIGA-SDAWFGADFWEQQGRTVLDEILLRGQVCYGGIDLSGLDDLTSMAL  360 (546)
T ss_pred             EEHHHHHHHHHHHHCCCHHCHHHHHCCCCEEECH-HHCCCCHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEE
T ss_conf             2077777699987318111227775123315100-102468689997314456535514866899733234555541068


Q ss_pred             EEEC--CCEE-EEEEE-------------------C-----------CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf             9822--7558-99873-------------------2-----------778988999999999986188829980068763
Q gi|254781215|r  335 VLRR--GPVI-EHLFD-------------------W-----------SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA  381 (511)
Q Consensus       335 ~~r~--G~~v-~~~~~-------------------~-----------~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~  381 (511)
T Consensus       361 ~f~~~~~~~~i~~~h~wv~~~~~~~~k~~~~~~~ew~k~G~lTit~~~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~-~  439 (546)
T COG4626         361 VGRYRETDEWIGWGHAWVHRAAVKRRKSEAPRLQEWVKAGDLTITRRDLIDYAEIVEWFMEIREKFLIKLVGFDPSGA-G  439 (546)
T ss_pred             EEECCCCCEEEEECCCCCHHHHCCCHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCH-H
T ss_conf             875378762788424551243113201024668999975927973787313899999999998737851885564432-8


Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCCEEEECCCCEEEEEECHH
Q ss_conf             6889898649827984277776640255227999999999999708999-818999998579679987998499984125
Q gi|254781215|r  382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKSLKSFIVPNTGELAIESKRV  460 (511)
Q Consensus       382 gV~d~L~~~g~~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l~-~d~~l~~el~~~~~~~~~~~gki~ie~Kkk  460 (511)
T Consensus       440 ~~~~~l~~~g~~lv~i~Q~~~--------~l-~~~~k~~e~~~~~g~i~~~dnp~m~wcv~Nv~~~~~~n~~~~~--kk~  508 (546)
T COG4626         440 EFRDALAEAGIKVVGIPQGFK--------KL-SGAIKTIERKLAEGVLVHGDNPLMEWCVGNVVVEEKGNAIIIT--KKV  508 (546)
T ss_pred             HHHHHHHHCCCCEEECCCHHH--------HH-CCHHHHHHHHHHCCCEEECCCHHHHHHHCCEEEEECCCCCCCC--CCC
T ss_conf             899999847995434450055--------54-7426789999866958978970787753107999628864010--024


Q ss_pred             HCCCCCCHHHHHHHHHC
Q ss_conf             48999898999999975
Q gi|254781215|r  461 KGAKSTDYSDGLMYTFA  477 (511)
Q Consensus       461 rg~~SPD~ADAl~l~fa  477 (511)
T Consensus       509 ~~~~KID~~~A~v~A~~  525 (546)
T COG4626         509 SGNGKIDPFMALVNAVS  525 (546)
T ss_pred             CCCCCCCHHHHHHHHHH
T ss_conf             77677479999999999