HHsearch alignment for GI: 254781215 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=97.27  E-value=0.011  Score=35.57  Aligned_cols=82  Identities=21%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEE
Q ss_conf             5777565557845899999999999874056555421012465025765978999999999998089--------96699
Q gi|254781215|r   40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------GISVI  111 (511)
Q Consensus        40 ~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p--------~~kv~  111 (511)
T Consensus        21 l~aL~~~Gf~~PTpIQ~~aIP~iL~G------k------Dvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aL   88 (574)
T PRK04537         21 VAGLESAGFTRCTPIQALTLPVALPG------G------DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL   88 (574)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf             99999779998999999999999579------9------88998489888999999999999983744345778996199


Q ss_pred             EEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             98085899999999999999985
Q gi|254781215|r  112 CLANSETQLKTTLWAEVSKWLSL  134 (511)
Q Consensus       112 vtApt~~Q~~~ilw~Ei~k~~~~  134 (511)
T Consensus        89 ILvPTRELA~QI-~~~~~~l~~~  110 (574)
T PRK04537         89 ILAPTRELAIQI-HKDAVKFGAD  110 (574)
T ss_pred             EECCCHHHHHHH-HHHHHHHHCC
T ss_conf             977989999999-9999998645